New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2078299	33 (0.860)	7 (0.210)	7/244	3.2	17.5%	intergenic (+41/+74)	PP_1853/PP_1854	LysR family transcriptional regulator/hypothetical protein
	?	NC_002947	= 2078346	37 (1.100)					intergenic (+88/+27)	PP_1853/PP_1854	LysR family transcriptional regulator/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGTCATCCACCCGCTTGCCCAGCAGTTGCTGCCCCAGCGGCGATCGTGGGGTAATCACCGTCA  >  NC_002947/2078214‑2078482                                                                                                                                     |                                                                                                                                         gAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCcgcgga                                                                                                                         >  1:877888/1‑148 (MQ=255)       gggCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGcc                                                                                                                   >  1:777282/1‑150 (MQ=255)               ggggcggTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCCCAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGa                                                                                                           <  2:593268/150‑1 (MQ=255)                     gTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACAt                                                                                                     <  1:903575/150‑1 (MQ=255)                      ttCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTCAAGACAGGGGGGTCCTTGTGGGAGCGGGCCGGCCCCCGCAGAGGCCGGTTCAGacaaacac                                                                                                    >  1:394150/1‑146 (MQ=255)                          aTGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGGCAAGAGGCCGGGTCAGACAACACCGACa                                                                                                >  1:688766/1‑150 (MQ=255)                          aTGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCa                                                                                                             >  1:590875/1‑137 (MQ=255)                          aTGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCa                                                                                                             <  2:590875/137‑1 (MQ=255)                              ccTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATTACAGCCCTGAAGACAGTGGGGTCACTGTGGGGGCGGGCGGGCCCGCGCAGAGGCCGGTTCAGACAAGATCGACAATgc                                                                                            >  1:376443/1‑149 (MQ=255)                               cTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCCCAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACCACGACAATGaa                                                                                           >  1:678488/1‑150 (MQ=255)                               cTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGaa                                                                                           <  2:724648/150‑1 (MQ=255)                                              agaATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGAGATCACAGCCCTGAAGACAGTGGGGCGCTTGTGGGAGCGGGCGGGCCCCCGAACAAGCCGGTTCAGAAAACATCGACAATGGCCGATAACTATGCGcc                                                                            >  1:425749/1‑150 (MQ=255)                                               gaATTATTGCCTGTGCCGTCCTTTTCGCTGGCCCGCACGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTTTGGGATCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGccc                                                                           <  1:729577/150‑1 (MQ=255)                                               gaATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGccc                                                                           <  2:777282/150‑1 (MQ=255)                                                       ggcTGTCCCGGCATTTTCGCGGCCCCGCCCGCACCCCGAGGGATATCACAGCCCTGTCCAGAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCAc                                                                   <  1:9587/148‑1 (MQ=255)                                                         cTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATAAGCGGTACCGTTGCGGCCCGGTGCAccc                                                                 >  2:665906/1‑149 (MQ=255)                                                                               ccgcccgcACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGTCATCCACCCGCTTGCCcag                                           >  1:44111/1‑150 (MQ=255)                                                                                 gcccggACCCACGGGGATATCCCAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGTCATCCACCCGCTTGCCcagca                                         <  2:394150/150‑1 (MQ=255)                                                                                      cACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTc                                                                >  2:573368/1‑122 (MQ=255)                                                                                      cACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTc                                                                <  1:573368/122‑1 (MQ=255)                                                                                       aCCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGAAGCGGGCGGGCCCGCGAAGAGGCCTGGTCAGACAACATCGACAATGAACAATACCTGTGCGCCCAGGTGCACCTCGTCATCCACCCGCTTGCCCAGCAGTtcct                                   >  1:208644/1‑150 (MQ=255)                                                                                         ccACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGTCATCCACCCGCTTGCCCAGCAGTtgctgc                                 >  1:835719/1‑150 (MQ=255)                                                                                          cacaGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGa                                                                                                  >  1:355207/1‑84 (MQ=255)                                                                                          cacaGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGa                                                                                                  <  2:355207/84‑1 (MQ=255)                                                                                             aGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGTCATCCACCCGc                                                   >  1:210323/1‑128 (MQ=255)                                                                                             aGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGTCATCCACCCGc                                                   <  2:210323/128‑1 (MQ=255)                                                                                             aGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGTCATCCACCCGCTTGCCca                                            <  2:223985/135‑1 (MQ=255)                                                                                             aGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGTCATCCACCCGCTTGCCca                                            >  1:223985/1‑135 (MQ=255)                                                                                                gattacacaGCCGTGAAGAGTGTTGTGTAATTGTGCGAGCGGGCGGGCGCGCGAAGAGGCCTGTTCAGACAACATCGACAATGAAGGTTACCTGTGCGCCCAGGTGCTCCTCGTCGTTCGCCCGATTGCCCAGCAGTTGCTGCCCCAgcg                          <  2:369611/145‑1 (MQ=255)                                                                                                 atatCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGTCATCCACCCGCTTGCCCAGCAGTTGCTGCCCCAgcgg                         >  1:84834/1‑150 (MQ=255)                                                                                                  tatCACCGCCCTGAAGACAGTGGGTTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGTCATCCACCCGCTTGCCCAGCAGTTGCTGCCCCAgcggc                        <  2:376443/150‑1 (MQ=255)                                                                                                           ccggAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGTCATCCACCCGCTTGCCCAGCAGTTGCTGCCCCAGCGGCGATCGTggg               <  1:235044/147‑1 (MQ=255)                                                                                                            cTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGTCATCCACCCGCTTGCCCAGCAGTTGCTGCCCCAgcggc                        <  2:402456/140‑1 (MQ=255)                                                                                                            cTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGTCATCCACCCGCTTGCCCAGCAGTTGCTGCCCCAgcggc                        >  1:402456/1‑140 (MQ=255)                                                                                                            cTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGTCATCCACCCGCTTGCCCAGCAGTTGCTGCCCCAGCGGCGATCGTgggg              >  1:423783/1‑150 (MQ=255)                                                                                                                aGACAGTGGGGTCCTTGTGGGGGGGGGCGGGCCCGCGAAGATGCCGGTTCAGACAACATCGACGATGAACGATACCTGTGCGCCCAGGTGCACCTCGTCAGCCACCCGCTTGCCCAGCAGTTGCTGCCCCAGCGGCGCGCTTGCGGTAAt          <  2:84834/150‑1 (MQ=255)                                                                                                                       ggggTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGTCATCCACCCGCTTGCCCGGTTGGTGCTGCCCCAGCGGCGATCGTGGGGTAATCACCGTc   >  1:505859/1‑150 (MQ=255)                                                                                                                        atatccctgtgGGTGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGTCATCCACCCGCTTGCCCAGCAGTTGCTGCCCCAGCGGCGATCGTGGGGTAATCACCGTCa  >  1:753844/8‑150 (MQ=255)                                                                                                                                     |                                                                                                                                         GAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCACCCACAGGGATATCACAGCCCTGAAGACAGTGGGGTCCTTGTGGGAGCGGGCGGGCCCGCGAAGAGGCCGGTTCAGACAACATCGACAATGAACGATACCTGTGCGCCCAGGTGCACCTCGTCATCCACCCGCTTGCCCAGCAGTTGCTGCCCCAGCGGCGATCGTGGGGTAATCACCGTCA  >  NC_002947/2078214‑2078482

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.