| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_002947 | 1,842,677 | Δ53 bp | coding (2107‑2159/2754 nt) | gacS ← | sensor protein GacS |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_002947 | 1842677 | 1842729 | 53 | 31 [0] | [1] 32 | gacS | sensor protein GacS |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1842676 | 0 (0.000) | 31 (0.820) | 28/276 | 0.5 | 98.4% | coding (2160/2754 nt) | gacS | sensor protein GacS |
| ? | NC_002947 | 1842730 = | 1 (0.030) | coding (2106/2754 nt) | gacS | sensor protein GacS | |||||
GAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACATCCATCAGCACCAGGTCGAACAATTCTTCCTGCACGGCCTGTACCGCCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACCAGCAGCAGGTTGGCGGCATTGTCGTCGACGCAGAGTATTTTCGGTCGTCGCTGGCCGTTGGGGTTGCTCCCCTCGGCCAGCGGACG > NC_002947/1842586‑1842876 | tccatgccgctgtgcaacaacgcgcgtttttcgttggccatggcatgggcagtgagggcgacgatcggcagcgggttgccgctctgggtgttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatcCGCATa > 2:566829‑M2/145‑150 (MQ=255) catgccgctgtgcaacaacgcgcgtttttcgttggccatggcatgggcagtgagggcgacgatcggcagcgggttgccgctctgggtgttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatcCGCATAAc < 1:566829‑M2/8‑1 (MQ=255) ccgctgtgcaacaacgcgcgtttttcgttggccatggcatgggcagtgagggcgacgatcggcagcgggttgccgctctgggtgttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatcCGCATAACCAtt < 1:813193‑M2/12‑1 (MQ=255) ccgctgtgcaacaacgcgcgtttttcgttggccatggcatgggcagtgagggcgacgatcggcagcgggttgccgctctgggtgttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatcCGCATAACCAtt < 1:813042‑M2/12‑1 (MQ=255) cctgtgcaacaacgcgcgtttttcgttggccatggcaatggcagtgagggcgacgatcggcagcgggttgccgctctggctgttctcccacaggctgatctgttcggtacaggcgcggccgtccatgccgggcatcCGCATAACCAttgt < 1:422559‑M2/14‑1 (MQ=255) ctgtgcaacaacgcgcgtttttcgttggccatggcatgggcagtgagggcgacgatcggcagcgggttgccgctctgggtgttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatcCGCATAACCAttgtt < 1:615900‑M2/15‑1 (MQ=255) aacaacgcgcgtttttcgttggccatggcatgggcagtgagggcgacgatcggcagcgggttgccgctctgggtgttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatcCGCATAACCATTGTTGACGGc > 2:603322‑M2/130‑150 (MQ=255) ccatggcatgggcagtgagggcgacgatcggcagcgggttgccgctctgggtgttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatcCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAg < 1:50757‑M2/39‑1 (MQ=255) ccatggcatgggcagtgagggcgacgatcggcagcgggttgccgctctgggtgttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatcCGCATAACCATTGTTGACGGCCAGTACATCGGCACCCAg > 2:50757‑M2/108‑146 (MQ=255) ggcagtgagggcgacgatcggcagcgggttgccgctctgggtgttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatcCGCAt < 2:474358‑M2/5‑1 (MQ=255) ggcagtgagggcgacgatcggcagcgggttgccgctctgggtgttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatcCGCAt > 1:474358‑M2/98‑102 (MQ=255) gcagtgagggcgacgatcggcagcgggttgccgctctgggtgttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatcCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGc < 2:769748‑M2/49‑1 (MQ=255) gcagtgagggcgacgatcggcagcgggttgccgctctgggtgttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatcCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGc > 1:769748‑M2/97‑145 (MQ=255) cagtgagggcgacgatcggcagcgggttgccgctctgggtgttctcccacaggcggatctgttcggtacaggcgcggccgtcgatgccgggcatcCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGtt > 1:54622‑M2/96‑150 (MQ=255) gacgatcggcagcgggttgccgctctgggtgttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatcCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACcagca > 1:9616‑M2/86‑150 (MQ=255) agcgggttgccgctctgggtgttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatcCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACCAGCAGCAGGTTggc < 1:366671‑M2/75‑1 (MQ=255) gctctgggtgttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatcCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACCAGCAGCAGGTTGGCGGCATTgtcgt < 1:603322‑M2/86‑1 (MQ=255) tgggtgttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatcCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACCAGCAGCAGGTTGGCGGCATTGTCGTCGAc < 1:335144‑M2/90‑1 (MQ=255) gttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatcCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTc < 2:804600‑M2/45‑1 (MQ=255) gttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatcCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTc > 1:804600‑M2/56‑100 (MQ=255) gttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatcCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACCAGCAGCAGGTTGGCGGCATTGTCGTCGACGCaga < 1:628297‑M2/95‑1 (MQ=255) gttctcccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatcCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACCAGCAGCAGGTTGGCGGCATTGTCGTCGACGCaga < 2:160669‑M2/95‑1 (MQ=255) ccacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatcCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACCAGCAGCAGGTTGGCGGCATTGTCGTCGACGCAGAGTAttt < 2:9616‑M2/101‑1 (MQ=255) cacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatcCGCATAACCAtt > 2:128921‑M2/49‑60 (MQ=255) cacaggcggatctgttcggtacaggcgcggccgtccatgccgggcatcCGCATAACCAtt < 1:128921‑M2/12‑1 (MQ=255) tccatcAGCACCAGGTCGAACAATTCTTCCTGCACGGCCTGTACCGCCGCATAACCATTGTTTACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACCAGCAGCAGGTTGGCGGCATTGTCGTCGACGCAGAGTATTTTc > 1:36923/1‑150 (MQ=255) ttcggtacaggcgcggccgtccatgccgggcatcCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACCAGCAGCAGGTTGGCGGCATTGTCGTCGACGCAGAGTATTTTCGGTCGTCGCTGGc > 1:563292‑M2/35‑150 (MQ=255) aggcgcggccgtccatgccgggcatcCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCGGCGTTTGTAATGGCTGCAGGTTGGCGGCATTGTAGTCGACGCAGAGGATCTTCGGTCGTCGCTGGCCGTTgggg > 1:841555‑M2/27‑150 (MQ=255) tccatgccgggcatcCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACCAGCAGCAGGTTGGCGGCATTGTCGTCGACGCAGAGTATTTTCGGTCGTCGCTGGCCGTTGGGGTTGCTCCCCTc > 1:285386‑M2/16‑150 (MQ=255) atcCGCATACCCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACCAGCAGCAGGTTGGCGGCATTGTCGTCGACGCAGAGTATTTTCGGTCGTCGCTGGCCGTTGGGGTTGCTCCCCTCGGCCAGCGGACg < 2:285386‑M2/147‑1 (MQ=255) atcCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACCAGCAGCAGGTTGGCGGCATTGTCGTCGACGCAGAGTATTTTCgg > 2:53648‑M2/4‑108 (MQ=255) atcCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACCAGCAGCAGGTTGGCGGCATTGTCGTCGACGCAGAGTATTTTCgg < 1:53648‑M2/105‑1 (MQ=255) | GAGGGCGACGATCGGCAGCGGGTTGCCGCTCTGGGTGTTCTCCCACAGGCGGATCTGTTCGGTACAGGCGCGGCCGTCCATGCCGGGCATCTGCACATCCATCAGCACCAGGTCGAACAATTCTTCCTGCACGGCCTGTACCGCCGCATAACCATTGTTGACGGCCAGTACCTCGGCACCCAGGTCTTCGAGCAGGGTTTTTACCAGCAGCAGGTTGGCGGCATTGTCGTCGACGCAGAGTATTTTCGGTCGTCGCTGGCCGTTGGGGTTGCTCCCCTCGGCCAGCGGACG > NC_002947/1842586‑1842876 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |