New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 380858	20 (0.800)	5 (0.240)	5/218	2.1	21.1%	intergenic (+45/+64)	gbcB/PP_0317	glycine‑betaine dioxygenase subunit/methyl‑accepting chemotaxis transducer
	?	NC_002947	= 380892	21 (1.020)					intergenic (+79/+30)	gbcB/PP_0317	glycine‑betaine dioxygenase subunit/methyl‑accepting chemotaxis transducer

TCAAACTGGGCGGCGAGGTGGAAATGGAGCACAACGGCGGGATTACCGAAGAGGACGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/380692‑380858 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgcgggcacgcccgctcccacaAGGTTCACCGCAGTCCTGAAGATAGCGATGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAAGCCAGACTGGCCACTGGATCAGTAATCGATCCGCACATCCCCTTTCGGCACGCTGCAGCACGACAGGATGTAGCCCTCGGCTTCGTC  <  NC_002947/380892‑380745                                                                                                                                                                                                                                                                                                                             TCAAACTGGGCGGCGAGGTGGAAATGGAGCACAACGGCGGGATTACCGAAGAGGACGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGG                                                                                                                                                                       <  1:523790/150‑1                                                             CCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAAGGTTCACCGCAGTCCTGAAGATAGCGATGACCCTGTGGGAGC                                                                                                           <  2:200739/150‑1                                                                     TACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAAGGTTCACCGCAGTCCTGAAGATAGCGATGACCCTGTGGGAGCGGGC                                                                                                       >  1:409144/1‑146                                                                     TACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAAGGTTCACCGCAGTCCTGAAGATAGCGATGACCCTGTGGGAGCGGGC                                                                                                       <  2:409144/146‑1                                                                                                              GATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAAGGTTCACCGCAGTCCTGAAGATAGCGATGACCCTGTGG                                                                                                               >  1:277077/1‑97                                                                                                              GATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAAGGTTCACCGCAGTCCTGAAGATAGCGATGACCCTGTGG                                                                                                               <  2:277077/97‑1                                                                                                                                                 TCGCGGGCACGCCCGCTCCCACAAGGTTCACCGCAGTCCTGAAGATAGCGATGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAAGCCAGACTGGCCACTGGATCAGTAATCGATCCGCACATCCCCTTTCGGCACGCTGCAGCACGACAG                       >  2:356996/1‑150                                                                                                                                                             CCGCTCCCACAAGGTTCACCGCAGTCCTGAAGATAGCGATGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAAGCCAGACTGGCCACTGGATCAGTAATCGATCCGCACATCCCCTTTCGGCACGCTGCAGCACGACAGGATGTAGCCCTC           >  1:512273/1‑150                                                                                                                                                             CCGCTCCCACAAGGTTCACCGCAGTCCTGAAGATAGCGATGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAAGCCAGACTGGCCACTGGATCAGTAATCGATCCGCACATCCCCTTTCGGCACGCTGCAGCACGACAGGATGTAGCCCTC           >  2:519944/1‑150                                                                                                                                                                      CAAGGTTCACCGCAGTCCTGAAGATAGCGATGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAAGCCAGACTGGCCACTGGATCAGTAATCGATCCGCACATCCCCTTTCGGCACGCTGCAGCACGACAGGATGTAGCCCTCGGCTTCGTC  <  1:278852/150‑1                                                                                                                                                                       AAGGTTCACCGCAGTCCTGAAGATAGCGATGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAAGCCAGACTGGCCACTGGATCAGTAA                                                                >  1:459120/1‑87                                                                                                                                                                       AAGGTTCACCGCAGTCCTGAAGATAGCGATGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAAGCCAGACTGGCCACTGGATCAGTAA                                                                <  2:459120/87‑1                                                                                                                                                                                                                                                                                                                             TCAAACTGGGCGGCGAGGTGGAAATGGAGCACAACGGCGGGATTACCGAAGAGGACGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/380692‑380858 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgcgggcacgcccgctcccacaAGGTTCACCGCAGTCCTGAAGATAGCGATGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAAGCCAGACTGGCCACTGGATCAGTAATCGATCCGCACATCCCCTTTCGGCACGCTGCAGCACGACAGGATGTAGCCCTCGGCTTCGTC  <  NC_002947/380892‑380745

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.