New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1427331 =	NA (NA)	5 (0.210)	5/250	2.4	NA	coding (1222/1422 nt)	PP_1250	group II intron‑encoding maturase
	?	NC_002947	1427349 =	NA (NA)					coding (1240/1422 nt)	PP_1250	group II intron‑encoding maturase

AGCCCGAGCCGGTCCCACAGTTTCTTTGGCAGCGCGTAGTTCATATGTTGCGCTCCCGAATTCCACCATGGACCTCGGCCATTGAAGGCTGACTTGTTGGCACGCTCCTCGCTCAACCCCAGGCGCATCAAGTTTCTCAGCCTCGTGGGAGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1427485‑1427331 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaggctgAGAAACTTGATGCGCCTGGGGTTGAGCGAGGAGCGTGCCAACAAGTCAGCCTTCAATGGCCGAGGTCCATGGTGGAATTCGGGAGCGCAACATATGAACTACGCGCTGCCAAAGAAACTGTGGGACCGGCTCGGGCTGGTCTCGATAC  >  NC_002947/1427349‑1427496                                                                                                                                                                                                                                                                                                                 AGCCCGAGCCGGTCCCACAGTTTCTTTGGCAGCGCGTAGTTCATATGTTGCGCTCCCGAATTCCACCATGGACCTCGGCCATTGAAGGCTGACTTGTTGGCACGCTCCTCGCTCAACCCCAGGCGCATCAAGTTTCTCAGCCTCGTGGGA                                                                                                                                                           <  1:256198/150‑1   CCCGAGCCGGTCCCACAGTTTCTTTGGCAGCGCGTAGTTCATATGTTGCGCTCCCGAATTCCACCATGGACCTCGGCCATTGAAGGCTGACTTGTTGGCACGCTCCTCGCTCAACCCCAGGCGCATCAAGTTTCTCAGCCTCGTGGGAGG                                                                                                                                                         >  1:183375/1‑150     CGAGCCGGTCCCACAGTTTCTTTGGCAGCGCGTAGTTCATATGTTGCGCTCCCGAATTCCACCATGGACCTCGGCCATTGAAGGCTGACTTGTTGGCACGCTCCTCGCTCAACCCCAGGCGCATCAAGTTTCTCAGCCTCGTGGGAGGCT                                                                                                                                                       >  2:294346/1‑150     CGAGCCGGTCCCACAGTTTCTTTGGCAGCGCGTAGTTCATATGTTGCGCTCCCGAATTCCACCATGGACCTCGGCCATTGAAGGCTGACTTGTTGGCACGCTCCTCGCTCAACCCCAGGCGCATCAAGTTTCTCAGCCTCGTGGGAGGCT                                                                                                                                                       <  2:477484/150‑1              CCCACAGTTTCTTTGGCAGCGCGTAGTTCATATGTTGCGCTCCCGAATTCCACCATGGACCTCGGCCATTGAAGGCTGACTTGTTGGCACGCTCCTCGCTCAACCCCAGGCGCATCAAGTTTCTCAGCCTCCCACGAGGCTGAGAAACTT                                                                                                                                              <  1:273944/150‑1                     TTTCTTTGGCAGCGCGTAGTTCATATGTTGCGCTCCCGAATTCCACCATGGACCTCGGCCATTGAAGGCTGACTTGTTGGCACGCTCCTCGCTCAACCCCAGGCGCATCAAGTTTCTCAGCCTCGTGGGAGGCT                                                                                                                                                       >  1:65318/1‑134                     TTTCTTTGGCAGCGCGTAGTTCATATGTTGCGCTCCCGAATTCCACCATGGACCTCGGCCATTGAAGGCTGACTTGTTGGCACGCTCCTCGCTCAACCCCAGGCGCATCAAGTTTCTCAGCCTCGTGGGAGGCT                                                                                                                                                       <  2:65318/134‑1                               AGCGCGTAGTTCATATGTTGCGCTCCCGAATTCCACCATGGACCTCGGCCATTGAAGGCTGACTTGTTGGCACGCTCCTCGCTCAACCCCAGGCGCATCAAGTTTCTCAGCCTCCCACGAGGCTGAGAAACTTGATGCGCCTGGGGTTGA                                                                                                                             <  2:428944/150‑1                                                             TTCCACCATGGACCTCGGCCATTGAAGGCTGACTTGTTGGCACGCTCCTCGCTCAACCCCAGGCGCATCAAGTTTCTCAGCCTCGTGGGAGGCT                                                                                                                                                       >  1:525145/1‑94                                                             TTCCACCATGGACCTCGGCCATTGAAGGCTGACTTGTTGGCACGCTCCTCGCTCAACCCCAGGCGCATCAAGTTTCTCAGCCTCGTGGGAGGCT                                                                                                                                                       <  2:525145/94‑1                                                                             GGCCATTGAAGGCTGACTTGTTGGCACGCTCCTCGCTCAACCCCAGGCGCATCAAGTTTCTCAGCCTCCCACGAGGCTGAGAAACTTG                                                                                                                                             >  1:329484/1‑88                                                                             GGCCATTGAAGGCTGACTTGTTGGCACGCTCCTCGCTCAACCCCAGGCGCATCAAGTTTCTCAGCCTCCCACGAGGCTGAGAAACTTG                                                                                                                                             <  2:329484/88‑1                                                                                                                                                CGTGGGAGGCTGAGAAACTTGATGCGCCTGGGGTTGAGCGAGGAGCGTGCCAACAAGTCAGCCTTCAATGGCCGAGGTCCATGGTGGAATTCGGGAGCGCAACATATGAACTACGCGCTGCCAAATAAACTGTGGGACCGGCTCGGGCTG            <  1:428944/150‑1                                                                                                                                                     aacgtcGAGAAACTTTATGCACCTGGGGTTGAGCGAGTAGCGTGCCAACAAGTCAGCCTTCAATGGCCGAGGTCCATGGTGGAATTCGGGAGCGCAACATATGAACTACGCGCTGCCAAAGAAACTGTGGGACCGGCTCGGGCTGGTCTC       <  2:196124/144‑1                                                                                                                                                          TGAGAAACTTGATGCGCCTGGGGTTGAGCGAGGAGCGTGCCAACAAGTCAGCCTTCAATGGCCGAGGTCCATGGTGGAATTCGGGAGCGCAACATATGAACTACGCGCTGCCAAAGAAACTGTGGGACCGGCTCGGGCTGGTCTCGATAC  >  2:40301/1‑150                                                                                                                                                                                                                                                                                                                 AGCCCGAGCCGGTCCCACAGTTTCTTTGGCAGCGCGTAGTTCATATGTTGCGCTCCCGAATTCCACCATGGACCTCGGCCATTGAAGGCTGACTTGTTGGCACGCTCCTCGCTCAACCCCAGGCGCATCAAGTTTCTCAGCCTCGTGGGAGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1427485‑1427331 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaggctgAGAAACTTGATGCGCCTGGGGTTGAGCGAGGAGCGTGCCAACAAGTCAGCCTTCAATGGCCGAGGTCCATGGTGGAATTCGGGAGCGCAACATATGAACTACGCGCTGCCAAAGAAACTGTGGGACCGGCTCGGGCTGGTCTCGATAC  >  NC_002947/1427349‑1427496

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.