| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 513624 = | 28 (1.130) | 6 (0.250) | 6/254 | 2.1 | 19.1% | coding (78/423 nt) | yhfA | hypothetical protein |
| ? | NC_002947 | 513648 = | 24 (1.000) | coding (102/423 nt) | yhfA | hypothetical protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CTAAGCTGACACCCTTTTCCGAAAATCAGGAGTCCGGGTAGATGAAGGCACGTATCCAGTGGGCCGGTGAGGCAATGTTCCTCGGCGAATCGGGGAGCGGCCATGTCGTCGTAATGGACGGCCCGCCCGAGGCCGGCGGCCGCAACCTGGGCGTGCGACCGATGGAAATGCTGTTGCTGGGCCTGGGTGGCTGCAGCAGCTTTGACGTGGTGAGCATTCTGAAGAAGTCGCGCCAGGCAGTGGAAAGCTGCGAGGCATTTCTGGAGGCGGAGCGCGCCAGCGAAGACC > NC_002947/513506‑513793 | cTAAGCTGACACCCTTTTCCGAAAATCAGGAGTCCGGGTAGATGAAGGCACGTATCCAGTGGGCCGGTGAGGCAATGTTCCTCGGCGAATCGGGGAGCGGCCATGTCGTCGTAATGGACGGCCCGCCCGAGGCCGGCGGCCGCAACCTgg < 1:378112/150‑1 (MQ=255) ccTTTTCCGAAAATCAGGAGTCCGGGTAGATGAAGGCACGTATCCAGTGGGCCGGTGAGGCAATGTTCCTCGGCGAATCGGGGAGCGGCCATGTCGTCGTAATGGACGGCCCGCCCGAGGCCGGCGGCCGCAACCTGGGCGTGCGACCGa > 2:231643/1‑150 (MQ=255) gAAAATCAGGAGTCTGGGTAGATGAAGGCACGTATACAGTGGGCCGGTGAGGCAATGTTCCTCGGCGAATCGGGGAGCGGCAATGTCGTCGTAATGGACGGCACGCCCGAGGCCGGCGCCCGCAACATAGGCGTGCGACCGATGGAACTg > 2:129861/1‑150 (MQ=255) cAGGAGTCCGGGTAGATGAAGGCACGTATCCAGTGGGCCGGTGAGGCAATGTTCCTCGGCGAATCGGGGAGCGGCCATGTCGTCGTAATGGACGGCCCGCCCGAGGCCGGCGGCCGCAACCTGGGCGTGCGACCGATGGAAATGCTGTTg > 1:75934/1‑150 (MQ=255) gAGTCCGGGTAGATGAAGGCACGTATCCAGTGGGCCGGTGAGGCAATGTTCCTCGGCGAATCGGGGAGCGGCCATGTCGTCGTAATGGACGGCCCGCCCGAGGCCGGCGGCCGCAACCTGGGCGTGCGACCGATGGAAATGCTGTTGCTg > 1:340787/1‑150 (MQ=255) tGAAGGCACGTATCCAGTGGGCCGGTGAGGCAATGTTCCTCGGCGAATCGGGGAGCGGCCATGTCGTCGTAATGGACGGCCCGCCCGAGGCCGGCGGCCGCAACCTGGGCGTGCGACCGATGGAAATGCTGTTGCTGGGCCTGGGTGGCt < 1:53112/150‑1 (MQ=255) aaGGCACGTATCCAGTGGGCCGGTGAGGCAATGTTCAGCTGGGAATCGGGGAGCGGCCATGTCGTCGTAATGGACGGCCCGCCCGAGGCCGGCGGCCGCAACCTGGGCGTGCGACCGATGGAAATGCTGTTGCTGGGCCTGGGTGGCTgc < 1:33081/150‑1 (MQ=255) tcaccacgtcaaagctgctgcagccacccaggcccagcaacagcatttccatcggtcgcacgcccaggttgCGGCCCGCCCGAGGCCGGCGGCCGCAAcc > 1:201068‑M1/72‑100 (MQ=255) tcaccacgtcaaagctgctgcagccacccaggcccagcaacagcatttccatcggtcgcacgcccaggttgCGGCCCGCCCGAGGCCGGCGGCCGCAAcc < 2:201068‑M1/29‑1 (MQ=255) aCGTATCCAGTGGGCCGGTGAGGCAATGTTCCTCGGCGAATCGGGGAGCGGCCATGTCGTCGTAATGGACGGCCCGCCCGAGGCCGGCGGCCGCAACCTGGGCGTGCGACCGATGGAAATGCTGt < 1:58674/125‑1 (MQ=255) aCGTATCCAGTGGGCCGGTGAGGCAATGTTCCTCGGCGAATCGGGGAGCGGCCATGTCGTCGTAATGGACGGCCCGCCCGAGGCCGGCGGCCGCAACCTGGGCGTGCGACCGATGGAAATGCTGt > 2:58674/1‑125 (MQ=255) tATCCAGTGGGCCGGTGAGGCAATGTTCCTCGGCGAATCGGGGAGCGGCCATGTCGTCGTAATGGACGGCCCGCCCGAGGCCGGCGGCCGCAACCTGGGCGTGCGACCGATGGAAATGCTGTTGCTGGGCCTGGGTGGCTGCAGCAGCtt < 1:231643/150‑1 (MQ=255) aGTGGGCCGGTGAGGCAATGTTCCTCGGCGAATCGGGGAGCGGCCATGTCGTCGTAATGTATGGCCCGCCCGAGGCCGGCGGCCGCAACCTGGGCGTGCGACCGATGGAAATGCTGTTGCTGGGCCTGGGTGGCTGCAGCAGCTTTGACg > 2:527176/1‑150 (MQ=255) ccacccaggcccagcaacagcatttccatcggtcgcacgcccaggttgCGGCCCGCCCGAGGCCGGCGGCCGCAACCTgg < 2:251182‑M1/32‑1 (MQ=255) ccacccaggcccagcaacagcatttccatcggtcgcacgcccaggttgCGGCCCGCCCGAGGCCGGCGGCCGCAACCTgg > 1:251182‑M1/49‑80 (MQ=255) gCAATGTTCCTCGGCGAATCGGGGAGCGGCCATGTCGTCGTAATGGACGGCCCGCCCGAGGCCGGCGGCCGCAACCTGGGCGTGCGACCGATGGAAATGCTGTTGCTGGGCCTGGGTGGCTGCAGCAGCttt < 1:22841/132‑1 (MQ=255) gCAATGTTCCTCGGCGAATCGGGGAGCGGCCATGTCGTCGTAATGGACGGCCCGCCCGAGGCCGGCGGCCGCAACCTGGGCGTGCGACCGATGGAAATGCTGTTGCTGGGCCTGGGTGGCTGCAGCAGCttt > 2:22841/1‑132 (MQ=255) cAATGTTCCTCGGCGAATCGGGGAGCGGCCATGTCGTCGTAATGGACGGCCCGCCCGAGGCCGGCGGCCGCAACCTGGGCGTGCGACCGATGGAAATGCTGTTGCTGGGCCTGGGTGGCTGCAGCAGCTTTGACGTGGTGAGCATTCTga < 2:340787/150‑1 (MQ=255) aaTGTTCCTCGGCGAATCGGGGAGCGGCCATGTCGTCGTAATGGACGGCCCGCCCGAGGCCGGCGGCCGCAACCTGGGCGTGCGACCGATGGAAATGCTGTTGCTGGGCCTGGGTGGCTGCAGCAGCTTTGACGTGGTGAGCATTCTgaa < 2:75934/150‑1 (MQ=255) aaTGTTCCTCGGCGAATCGGGGAGCGGCCATGTCGTCGTAATGGACGGCCCGCCCGAGGCCGGCGGCCGCAACCTGGGCGTGCGACCGATGGAAATGCTGTTGCTGGGCCTGGGTGGCTGCAGCAGCTTTGACGTGGTGAGCATTCTgaa < 1:489557/150‑1 (MQ=255) tCGGCGAATCGGGGAGCGGCCATGTCGTCGTAATGGACGGCCCGCCCGAGGCCGGCGGCCGCAACCTGGGCGTGCGACCGATGGAAATGCTGTTGCTGGGCCTGGGTGGCTGCAGCAGCTTTGACGTGGTGAGCATTCTGAAGAAGTcgc > 1:361069/1‑150 (MQ=255) cGGCGAATCGGGGAGCGGCCATGTCGTCGTAATGGACGGCCCGCCCGAGGCCGGCGGCCGCAACCTGGGCGTGCGACCGATGGAAATGCTGTTGCTgg < 1:147765/98‑1 (MQ=255) cGGCGAATCGGGGAGCGGCCATGTCGTCGTAATGGACGGCCCGCCCGAGGCCGGCGGCCGCAACCTGGGCGTGCGACCGATGGAAATGCTGTTGCTgg > 2:147765/1‑98 (MQ=255) gtggAGCGTCCATGTCGTCGTAATGGACGGCCCGCCCGAGGCCGGCTGCCGCAACCTGGGCGTGCGACCGATGGAAATGCTGTTGCTGGGCCTGGGTGGCTGCAGCAGCTTTGACGTGGTGAGCATTCTGAAGAAGTCGCGCCAGGCAGt < 1:557319/148‑1 (MQ=255) gtcgtcGTAAGGGACGGCCCGCCCGAGGCCGGCGGCCGCAACCTGGGCGTACGACCGATGGAAATGCTGTTGCTGCGCTTGGGTGGCTGCAGCAGCTTTGGTGTGCAGAGCATTCGGGATAAGTCGCGGGAGGCAGTGGAAAGCTGCGAg > 2:192682/1‑150 (MQ=255) ccaggttgcggccgccggcctcgggcgggccgCAACCTGGGCGTGCGACCGATGGAAATGCTGTTGCTGGGCCTGGGTgg < 2:251182‑M2/48‑1 (MQ=255) ccaggttgcggccgccggcctcgggcgggccgCAACCTGGGCGTGCGACCGATGGAAATGCTGTTGCTGGGCCTGGGTgg > 1:251182‑M2/33‑80 (MQ=255) ggttgcggccgccggcctcgggcgggccgCAACCTGGGCGTGCGACCGATGGAAATGCTGTTGCTGGGCCTGGGTGGCTGCAGCAGCTTTGACGTGGTGa < 2:201068‑M2/71‑1 (MQ=255) ggttgcggccgccggcctcgggcgggccgCAACCTGGGCGTGCGACCGATGGAAATGCTGTTGCTGGGCCTGGGTGGCTGCAGCAGCTTTGACGTGGTGa > 1:201068‑M2/30‑100 (MQ=255) tGGACGGCCCGCCCGAGGCCGGCGGCCGCAACCTGGGCGTGCGACCGATGGAAATGCTGTTGCTGGGCCTGGGt < 2:344151/74‑1 (MQ=255) tGGACGGCCCGCCCGAGGCCGGCGGCCGCAACCTGGGCGTGCGACCGATGGAAATGCTGTTGCTGGGCCTGGGt > 1:344151/1‑74 (MQ=255) gccgccggcctcgggcgggccgCAACCTGGGCGTGCGACCGATGGAAATGCTGTTGCTGGGCCTGGGTGGCTGCAGCAGCTTTGACGTGGTGAGCATTCTGAAGAAGTCGCGCCAGGCAGTGGAAAGCTGCGAGGCATTTCTgg < 1:50121‑M2/122‑1 (MQ=255) gccgccggcctcgggcgggccgCAACCTGGGCGTGCGACCGATGGAAATGCTGTTGCTGGGCCTGGGTGGCTGCAGCAGCTTTGACGTGGTGAGCATTCTGAAGAAGTCGCGCCAGGCAGTGGAAAGCTGCGAGGCATTTCTgg > 2:50121‑M2/23‑144 (MQ=255) CCGCCCGAGGCCGGCGGCCGCAACCTGGGCGTGCGACCGATGGAAATGCTGTTGCTGGGCCTGGGTGGCTGCAGCAGCTTTGACGTGGTGAGCATTCTGAAGAAGTCGCGCCAGGCAGTGGAAAGCTGCGAGGCATTTCTGGAGGCGGAg < 1:28566‑M1/150‑1 (MQ=255) cgAGGCCGGCGGCCGCAACCTGGGCGTGCGACCGATGGAAATGCTGTTGCTGGGCCTGGGTGGCTGCAGCAGCTTTGACGTGGTGAGCATTCTGAAGAAGTCGCGCCAGGCAGTGGAAAGCTGCGAGGCATTTCTGGAGGCGGAtcgcgc < 1:527176/150‑1 (MQ=255) gccgCAACCTGGGCGTGCGACCGATGGAAATGCTGTTGCTGGGCCTGGGTGGCTGCAGCAGCTTTGACGTGGTGAGCATTCTGAAGAAGTCGCGCCAGGCAGTGGAAAGCTGCGAGGCATTTCTGGAGGCGGAGCGCGCCAGCGAAGAcc > 2:262539‑M2/5‑150 (MQ=255) | CTAAGCTGACACCCTTTTCCGAAAATCAGGAGTCCGGGTAGATGAAGGCACGTATCCAGTGGGCCGGTGAGGCAATGTTCCTCGGCGAATCGGGGAGCGGCCATGTCGTCGTAATGGACGGCCCGCCCGAGGCCGGCGGCCGCAACCTGGGCGTGCGACCGATGGAAATGCTGTTGCTGGGCCTGGGTGGCTGCAGCAGCTTTGACGTGGTGAGCATTCTGAAGAAGTCGCGCCAGGCAGTGGAAAGCTGCGAGGCATTTCTGGAGGCGGAGCGCGCCAGCGAAGACC > NC_002947/513506‑513793 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |