New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2063203 =	26 (1.050)	5 (0.250)	5/214	2.0	25.6%	intergenic (+17/‑190)	PP_1838/PP_1839	membrane protein/hypothetical protein
	?	NC_002947	2063297 =	8 (0.400)					intergenic (+111/‑96)	PP_1838/PP_1839	membrane protein/hypothetical protein

ACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCCGTTCAATGAAAGAGTGGGAAGTCATTTTTGCCGACCAGAAGGGCGAACCGTCCGCATTG  >  NC_002947/2063177‑2063446                                                                                                                         |                                                                                                                                                      acCGAAGGAAACCGGGTCCGCTTTGCCGCCAATTCGCGGGCTGGCCCTCTCACACAGGCTTTGCACAGGTTTCGGCACTTGTCCAGGTCCTTTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATc                                                                                                                          <  2:25215/150‑1 (MQ=255)                gcccGCGTTGCGCCCTTTCCGGGGGCTTGCCCGCTCCCACCGGCTTTCCGCAGGTTTCGGACCTTGTGCAGGTCCTGTGCGGCCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCa                                                                                                           <  2:170978/148‑1 (MQ=255)                              CCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATc                                                                                             <  1:350930‑M1/150‑1 (MQ=255)                                          TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTg                                                                                                                                   >  2:505469‑M1/1‑100 (MQ=255)                                          TTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTg                                                                                                                                   <  1:505469‑M1/100‑1 (MQ=255)                                               cgctcgcacaggacctgcacaaggtccgaaccctgtgcaatgcctgtgggagcgggcaagcccgcgaatgggccCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGt                                                                            >  1:387237‑M2/75‑150 (MQ=255)                                                GCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGtt                                                                           >  2:350930‑M1/1‑150 (MQ=255)                                                  tcgcacaggacctgcacaaggtccgaaccctgtgcaatgcctgtgggagcgggcaagcccgcgaatgggccCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGtt                                                                           <  2:57532‑M2/77‑1 (MQ=255)                                                  tcgcacaggacctgcacaaggtccgaaccctgtgcaatgcctgtgggagcgggcaagcccgcgaatgggccCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGtt                                                                           >  1:57532‑M2/72‑148 (MQ=255)                                                          gCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAgg                                                                 <  1:362406/150‑1 (MQ=255)                                                                     ggtccgaaccctgtgcaatgcctgtgcgagcgggcaagcccgcgaatgggccCCGCACaa                                                                                                                                                >  2:230180‑M2/53‑60 (MQ=255)                                                                     ggtccgaaccctgtgcaatgcctgtgcgagcgggcaagcccgcgaatgggccCCGCACaa                                                                                                                                                <  1:230180‑M2/8‑1 (MQ=255)                                                                           gACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTg                                                                                    <  2:109173/114‑1 (MQ=255)                                                                           gACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTg                                                                                    >  1:109173/1‑114 (MQ=255)                                                                                    cAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACa                                                                                                                               <  2:232912/62‑1 (MQ=255)                                                                                    cAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACa                                                                                                                               >  1:232912/1‑62 (MQ=255)                                                                                           tgtgCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCAAATGCCTTGTGTTCGTTGACTGAGAGGGTCCGTTCAATGAAAGAGTGGGAAGTCAttttt                                <  2:370018/150‑1 (MQ=255)                                                                                                             cgcgaatgggccCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCCGTTCAATGAAAGAGTGGGAAGTCATTTTTGCCGACCAGAAGGGCGaa              >  2:359751‑M2/13‑150 (MQ=255)                                                                                                                       ccCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCCGTTCAATGAAAGAGTGGGAAGTCATTTTTGCCGACCAGAAGGGCGAACCGTCCGCAt    <  2:387237‑M2/148‑1 (MQ=255)                                                                                                                         ccGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCCGTTCAATGAAAGAGTGGGAAGTCATTTTTGCCGACCAGAAGGGCGAACCGTCCGCATTg  >  1:451609/1‑150 (MQ=255)                                                                                                                         |                                                                                                                                                      ACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAGGGTCCGTTCAATGAAAGAGTGGGAAGTCATTTTTGCCGACCAGAAGGGCGAACCGTCCGCATTG  >  NC_002947/2063177‑2063446

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.