| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 6006595 = | 30 (1.210) | 11 (0.610) | 11/192 | 0.7 | 47.0% | intergenic (+7/+92) | ydcJ/PP_5261 | metalloprotein/LysR family transcriptional regulator |
| ? | NC_002947 | 6006679 = | 3 (0.170) | intergenic (+91/+8) | ydcJ/PP_5261 | metalloprotein/LysR family transcriptional regulator | |||||
GCCCGCTCCCACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCG‑CCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTGG > NC_002947/6006615‑6006823 | gcccgctcccacaggtcgtatgccctgtacctgtgggagcgggcgagcccgcgaagaggccggtGCAGGTGATCAAAGACGCGGCAGGATTTc > 2:377205‑M2/65‑93 (MQ=255)gcccgctcccacaggtcgtatgccctgtacctgtgggagcgggcgagcccgcgaagaggccggtGCAGGTGATCAAAGACGCGGCAGGATTTc < 1:377205‑M2/29‑1 (MQ=255) CCGCTCCCACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCg > 2:586467‑M1/1‑99 (MQ=255) CCGCTCCCACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCg < 1:586467‑M1/99‑1 (MQ=255) TCCCACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGGGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCg < 2:180920‑M1/150‑1 (MQ=255) ccacaggtcgtatgccctgtacctgtgggagcgggcgagcccgcgaagaggccggtGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCt > 2:538509‑M2/57‑150 (MQ=255) CCACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCCCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCt < 2:443377‑M1/150‑1 (MQ=255) cacaggtcgtatgccctgtacctgtgggagcgggcgagcccgcgaagaggccggtGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAAccgcc > 1:493298‑M2/56‑140 (MQ=255) cacaggtcgtatgccctgtacctgtgggagcgggcgagcccgcgaagaggccggtGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAAccgcc < 2:493298‑M2/85‑1 (MQ=255) cacaGGTACAGGGCATACGACCTGCGGGAGCGTGCGAGCCCGCGAGGAGGCCGGGGCAGGTGATGAAAGACGAGGCAGGATTTTGACATCCGGTAAATCAACTCGCGCCACCTCCCCAACCAGAAACGCACTCAACCGCCGCAACCGCTc > 2:295191/1‑150 (MQ=255) CACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTc < 1:192004‑M1/150‑1 (MQ=255) ggtcgtatgccctgtacctgtgggagcgggcgagcccgcgaagaggccggtGCAGGTGATCAAAGACGCGGCa > 1:516888‑M2/52‑73 (MQ=255) ggtcgtatgccctgtacctgtgggagcgggcgagcccgcgaagaggccggtGCAGGTGATCAAAGACGCGGCa < 2:516888‑M2/22‑1 (MQ=255) gtcgtatgccctgtacctgtgggagcgggcgagcccgcgaagaggccggtGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTcgccg‑c > 2:1926‑M2/51‑150 (MQ=255) gtcgtatgccctgtacctgtgggagcgggcgagcccgcgaagaggccggtGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTcgccg‑c < 1:538509‑M2/100‑1 (MQ=255) ccctgtacctgtgggagcgggcgagcccgcgaagaggccggtGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCAc > 2:252669‑M2/43‑98 (MQ=255) ccctgtacctgtgggagcgggcgagcccgcgaagaggccggtGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCAc < 1:252669‑M2/56‑1 (MQ=255) tACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCG‑CCTCGCCGGGt < 2:192004/150‑1 (MQ=255) aCGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCACAACCGCTCGCCG‑CCTCGCCGGGTg > 1:155159/1‑150 (MQ=255) acctgtgggagcgggcgagcccgcgaagaggccggtGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCG‑CCTCGCCGGGTgcgc > 1:514203‑M2/37‑150 (MQ=255) tgtgggagcgggcgagcccgcgaagaggccggtGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCGCTCAACCGCCGCAACCGCTCGCCG‑CCTCGCCGGGTGCGCGGc < 1:8171‑M2/117‑1 (MQ=255) tgtgggagcgggcgagcccgcgaagaggccggtGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCG‑CCTCGCCGGGTGCGCGGc < 1:295191‑M2/117‑1 (MQ=255) ctcttcgcgggctcgcccgcgaagaggccggtGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGGCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACAGCT‑GCGGCCCGCTCCGGGTGCGCGGcc > 1:451451‑M2/33‑150 (MQ=255) ccggtGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCG‑CCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTgg < 2:256362‑M2/145‑1 (MQ=255) cggtGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGc > 1:361903‑M2/5‑97 (MQ=255) cggtGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGc < 2:361903‑M2/93‑1 (MQ=255) | GCCCGCTCCCACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCG‑CCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTGG > NC_002947/6006615‑6006823 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |