| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 6006630 | 32 (0.550) | 16 (0.380) | 13/190 | 2.7 | 36.7% | intergenic (+42/+57) | ydcJ/PP_5261 | metalloprotein/LysR family transcriptional regulator |
| ? | NC_002947 | = 6006642 | 32 (0.760) | intergenic (+54/+45) | ydcJ/PP_5261 | metalloprotein/LysR family transcriptional regulator | |||||
AATACGGCAGCAACGCCAACCGCGAAGCGTTCGAAGCGGCGCTGGGGTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/6006449‑6006630‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accggcctcttcgcgggctcgcccgctcccacaggtCGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTACAGATTTACATCGAACCCAGGTTCAACGCCTGTGCACAGGCCTGCAGCGACCGGCGCTCGCTTTGCGCATACAGCGCCAGCTCATCCTGTACCTGCAAC < NC_002947/6006642‑6006495 AATACGGCAGCAACGCCAACCGCGAAGCGTTCGAAGCGGCGCTGGGGTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCG < 2:981122/150‑1 GGCAGCAACGCCAACCGCGAAGCGTTCGAAGCGGCGCTGGGGTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTC > 2:243202/1‑150 GCGAAGCGTTCGAAGCGGCGCTGGGGTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGCACCGGCCTCTTCGCGGGCTCGCCCG > 2:405314/1‑150 GTTCGAAGCGGCGCTGGGGTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCAC > 2:1465594/1‑150 GAAGCGGCGCTGGGGTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTC > 1:1176579/1‑134 GAAGCGGCGCTGGGGTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTC < 2:1176579/134‑1 AAGCGGCGCTGGGGTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTC < 2:969548/150‑1 GTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTCGTATGCCCTGTAC > 1:1131723/1‑150 GTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGCACCGGCCTCTTCGCGG > 1:1403682/1‑116 GTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGCACCGGCCTCTTCGCGG < 2:1403682/116‑1 AGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTCGTATGCCCTGTACCTGTG < 1:873882/150‑1 ACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGG > 1:213193/1‑126 ACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGG < 2:213193/126‑1 CAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTCGTATGCCCTGTACCTGTGGGAGC < 2:890097/150‑1 ATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGACTCGCCCGCTCCCACAGGTCGTATGCCCTGTACCTGTGGGAGCGGGC < 1:243202/150‑1 GAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTCGTATGCCCTGTACCTGTGGGAGCGGGCGA < 2:1131723/150‑1 GTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTC < 2:780341/93‑1 GTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTC > 1:780341/1‑93 GCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTC < 2:980523/95‑1 GCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTC > 1:980523/1‑95 CGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGC > 2:573606/1‑60 CGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGC < 1:573606/60‑1 GTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTCGTATGCCCTGTACCTGTGGGAGCGGGC > 2:856716/1‑116 GTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTCGTATGCCCTGTACCTGTGGGAGCGGGC < 1:856716/116‑1 TGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTCGTATGCCCTGTACCTGTGG > 1:887619/1‑103 TGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTCGTATGCCCTGTACCTGTGG < 2:887619/103‑1 TGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTC < 1:230213/51‑1 TGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTC > 2:230213/1‑51 AGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTCGTATGCCCTGTACCTGTGG < 2:1170797/88‑1 AGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTCGTATGCCCTGTACCTGTGG > 1:1170797/1‑88 GGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTCGTATGCCCTGTACCTGTGGGAGCGG < 2:1478220/81‑1 GGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTCGTATGCCCTGTACCTGTGGGAGCGG > 1:1478220/1‑81 TACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTCGTATGCCCTGTACCTGTGGGAGCGGc < 1:932619/64‑2 TACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTCGTATGCCCTGTACCTGTGGGAGCGGc > 2:932619/1‑63 GCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTCGTATGCCCTGTACCTGTGGGAGC < 1:642172/56‑1 GCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTCGTATGCCCTGTACCTGTGGGAGC > 2:642172/1‑56 TCTTCGCGGGCTCGCCCGCTCCCACAGGTCGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTACAGATTTACATCGAACCCAGGTTCAACGCCTGTGCACAGGCCTGCAGCGACCGGCGCTCGCTTTGCGCATAC > 1:1465594/1‑150 TTCGCGGGCTCGCCCGCTCCCACAGGTCGTATGCCCTTTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTACAGATTTACATCGAACC > 1:1241989/1‑93 TTCGCGGGCTCGCCCGCTCCCACAGGTCGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTACAGATTTACATCGAACC < 2:1241989/93‑1 CTCGCCCGCTCCCACAGGTCGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTACAGATTTACATCGAACCCAGGTTCAACGCCTGTGCACAGGCCTGCAGCGACCGGCGCTCGCTTTGCGCATACAGCGCCAGCT > 1:310995/1‑150 GCCCGCTCCCACAGGTCGTATGCCCCATCCCTGTGGGAGCGGGCGAGCCCGCGGAGAGGCCGGTACAGATTTACATCGAACCCAGGTTCAACGCCTGTGCACAGGCCTGCAGCGACCGGCGCTCGCTTTGCGCATACAGCGCCAGCTCAT > 2:763646/1‑150 CCCGCTCCCACAGGTCGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTACAGATTTACATCGAACCCAG > 1:1041347/1‑84 CCCGCTCCCACAGGTCGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTACAGATTTACATCGAACCCAG < 2:1041347/84‑1 CCGCTCCCACAGGTCGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTA > 1:981012/1‑63 CCGCTCCCACAGGTCGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTA < 2:981012/63‑1 CTCCCACAGGTCGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTACAGATTTACATCGAACCCAGGTTCAACGCCTGTGCACAGGCCTGCAGCGACCGGCGCTCGCTTTGCGCATACAGCGCCAGCTCATCCTGT < 2:310995/150‑1 CCACAGGTCGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTACAGATTTACATCGAACCCAGGTTCAACGCCTGTGCACAGGCgt > 1:1311585/1‑98 CCACAGGTCGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTACAGATTTACATCGAACCCAGGTTCAACGCCTGTGCACAGGCgt < 2:1311585/100‑3 CCACAGGTCGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTACAGATTTACATCGAACCCAGGTTCAACGCCTGTGCACAGGCCTGCAGCGACCGGCGCTCGCTTTGCGCATACAGCGCCAGCTCATCCTGTACC > 2:565490/1‑150 CCACAGGTCGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTACAGATTTACATCGAACCCAGGTTCAACGCCTGTGCACAGGCCTGCAGCGACCGGCGCTCGCTTTGCGCATACAGCGCCAGCTCATCCTGTACC > 2:269223/1‑150 GTCGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTACAGATTTACATCGAACCCAGGTTCAACGCCTGTGCACAGGCCTGCAGCGACCGGCGCTCGCTTTGCGCATACAGCGCCAGCTCCTCCTGTACCTGCAAC > 1:350253/1‑150 GTCGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTACAGATTTACATCGAACCCAGGTTCAACGCCTGTGCACAGGCCTGCAGCGACCGGCGCTCGCTTTGCGCATACAGCGCCAGCTCATCCTGT < 2:510332/141‑1 GTCGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTACAGATTTACATCGAACCCAGGTTCAACGCCTGTGCACAGGCCTGCAGCGACCGGCGCTCGCTTTGCGCATACAGCGCCAGCTCATCCTGT > 1:510332/1‑141 AATACGGCAGCAACGCCAACCGCGAAGCGTTCGAAGCGGCGCTGGGGTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/6006449‑6006630‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accggcctcttcgcgggctcgcccgctcccacaggtCGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTACAGATTTACATCGAACCCAGGTTCAACGCCTGTGCACAGGCCTGCAGCGACCGGCGCTCGCTTTGCGCATACAGCGCCAGCTCATCCTGTACCTGCAAC < NC_002947/6006642‑6006495 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |