| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2577167 | 67 (1.150) | 15 (0.280) | 13/240 | 3.7 | 19.6% | coding (1271/1776 nt) | PP_2259 | sigma‑54 dependent transcriptional regulator |
| ? | NC_002947 | = 2577215 | 62 (1.170) | coding (1223/1776 nt) | PP_2259 | sigma‑54 dependent transcriptional regulator | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GGTCAGCGCGTTCGCGCAGGGGAGGCAGCACCAGCGTCAGGCCGGCGATGCGGTAGTACAGGTCCTGGCGAAAGCGCCCGGCGCGCACTTCGTCGGCCAGGTTGCGATTGCTCGCCGACACCACGCGGATATCCACCGGCACCGGTTCGCCACTGCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2577009‑2577167‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccactgcccaCCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGGGCAGTGGCGAACCGGTGCCGGTGGATATCCGCGTGGTGTCGGCGAGCAATCGCAACCTGGCCGACGAAGTGCGCGCCGGGCGCTTTCGCCAGGACCT < NC_002947/2577215‑2577068 GGTCAGCGCGTTCGCGCAGGGGAGGCAGCACCAGCGTCAGGCCGGCGATGCGGTAGTACAGGTCCTGGCGAAAGCGCCCGGCGCGCACTTCGTCGGCCAGGTTGCGATTGCTCGCCGACACCACGCGGATATCCACCGGCACCGGTTCGC > 2:1108481/1‑150 TTCGCGCAGGGGAGGCAGCACCAGCGTCAGGCCGGCGATGCGGTAGTACAGGTCCTGGCGAAAGCGCCCGGCGCGCACTTCGTCGGCCAGGTTGCGATTGCTCGCCGACACCACGCGGATATCCACCGGCACCGGTTCGCCACTGCCCAC > 2:952765/1‑150 CACCACGGTCAGGCCGGCGATGCGGTAGTACAGGTCCTGGCGAAAGCGCCCGGCGCGCACTTCGTCGGCCAGGTTGCGATTGCTCGCCGACACCACGCGGATATCCACCGGCACCGGTTCGCCACTGCCCACCCAGGCCCGCCTGCTGCG > 2:370744/1‑150 ACCAGCGTCAGGCCGGCGATGCGGTAGTACAGGTCCTGGCGAAAGCGCCCGGCGCGCACTTCGTCGGCCAGGTTGCGATTGCTCGCCGACACCACGCGGATATCCACCGGCACCGGTTTGCCACTGCCCACCCAGGCCCGCCTGCTGCGC > 1:811889/1‑150 CAGCGTCAGGCCGGCGATGCGGTAGTACAGGTCCTGGCGAAAGCGCCCGGCGCGCACTTCGTCGGCCAGGTTGCGATTGCTCGCCGACACCCCGCGGATATCCACCGGCACCGGTTCGCCACT < 2:921479/123‑1 CAGCGTCAGGCCGGCGATGCGGTAGTACAGGTCCTGGCGAAAGCGCCCGGCGCGCACTTCGTCGGCCAGGTTGCGATTGCTCGCCGACACCACGCGGATATCCACCGGCACCGGTTCGCCACT > 1:921479/1‑123 GTCAGGCCGGCGATGCGGTAGTACAGGTCCTGGCGAAAGCGCCCGGCGCGCACTTCGTCGGCCAGGTTGCGATTGCTCGCCGACACCACGCGGATATCCACCGGCACCGGTTCGCCACTGCCCACCCAGGCCCGCCTGCTGCGCGTACTG > 2:11810/1‑150 TACAGGTCCTGGCGAAAGCGCCCGGCGCGCACTTCGTCGGCCAGGTTGCGATTGCTCGCCGACACCACGCGGATATCCACCGGCACCGGTTCGCCACTG‑‑‑‑CCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGG < 1:619953/150‑1 AGGTCCTGGCGAAAGCGCCCGGCGCGCACTTCGTCGGCCAGGTTGCGATTGCTCGCCGACACCACGCGGATATCCACCGGCACCGGTTCGCCACTGCCCACCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTG < 1:370744/150‑1 AGGTCCTGGCGAAAGCGCCCGGCGCGCACTTCGTCGGCCAGGTTGCGATTGCTCGCCGACACCACGCGGATATCCACCGGCACCGGTTCGCCACTG‑‑‑‑CCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTG > 2:1091729/1‑146 AGGTCCTGGCGAAAGCGCCCGGCGCGCACTTCGTCGGCCAGGTTGCGATTGCTCGCCGACACCACGCGGATATCCACCGGCACCGGTTCGCCACTG‑‑‑‑CCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTG < 1:1091729/146‑1 GGCGAAAGCGCCCGGCGCGCACTTCGTCGGCCAGGTTGCGATTGCTCGCCGACACCACGCGGATATCCACCGGCACCGGTTCGCCACTGCCCACCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGGGCAGTG < 1:11810/150‑1 GCGAAAGCGCCCGGCGCGCACTTCGTCGGCCAGGTTGCGATTGCTCGCCGACACCACGCGGATATCCACCGGCACCGGTTCGCCACTGCCCACCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGGGCAGTGG < 1:952765/150‑1 GAAAGCGCCCGGCGCGCACTTCGTCGGCCAGGTTGCGATTGCTCGCCGACACCACGCGGATATCCACCGGCACCGGTTCGCCACTGCCCACCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGGGCAGTG < 1:886786/147‑1 GAAAGCGCCCGGCGCGCACTTCGTCGGCCAGGTTGCGATTGCTCGCCGACACCACGCGGATATCCACCGGCACCGGTTCGCCACTGCCCACCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGGGCAGTG > 2:886786/1‑147 CGCACTTCGTCGGCCAGGTTGCGATTGCTCGCCGACACCACGCGGATATCCACCGGCACCGGTTTGCCACTGCCCACCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGGGCAGTGGCGAACCGGTGCCGGTG < 2:811889/150‑1 GTTGCGATTGCTCGCCGACACCACGCGGATATCCACCGGCACCGGTTCGCCACTGCCCA > 2:148065/1‑59 GTTGCGATTGCTCGCCGACACCACGCGGATATCCACCGGCACCGGTTCGCCACTGCCCA < 1:148065/59‑1 CACCGGTTTGCCACTGCCCACCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGGGCAGTGGCGAAC < 1:5259/83‑1 CACCGGTTTGCCACTGCCCACCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGGGCAGTGGCGAAC > 2:5259/1‑83 GCCACTGCCCACCCAGGCCCGCCTGCTGCGCGTCCGGCATTCTCGCAGCATCCCGCCGCTGGGCAGTGGCGAACCGGTGCCGGTGGATATCCGCGTGGTGTCGGCGAGCAATCGCAACCTGGCCGACGAAGTGCGCGCCGGGCGCTTTCG < 2:353203/150‑1 CACTGCCCACCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGGGCAGTGGCGAACCGGTGCCGGTGGATATCCGCGTGGTGTCGGCGAGCAATCGCAACCTGGCCGACGAAGTGCGCGCCGGGCGCTTTCGCC > 2:311901/1‑150 ACTGCCCACCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGGGCAGTGGCGAACCGGTGCCGGTGGATATCCGCGTGGTGTCGGCGAGCAATCGCAACCTGGCCGACGAAGTGCGCGCCGGGCGCTTTCGCCA < 1:229712/150‑1 ACTGCCCACCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGGGCAGTGGCGAACCGGTGCCGGTGGATATCCGCGTGGTGTCGGCGA > 2:1322819/1‑104 ACTGCCCACCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGGGCAGTGGCGAACCGGTGCCGGTGGATATCCGCGTGGTGTCGGCGA < 1:1322819/104‑1 CACCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCGTGATCCAGCCGCTGGGCAGTGGCGAACCGGTGCCGGTGGATATCCGCGTGGTGTCGGCGAGCAATCGCAACCTGGCCGACGAAGTGCGCGCCGGGCGCTTTCGCCAGGACCT < 1:78718/150‑1 GGTCAGCGCGTTCGCGCAGGGGAGGCAGCACCAGCGTCAGGCCGGCGATGCGGTAGTACAGGTCCTGGCGAAAGCGCCCGGCGCGCACTTCGTCGGCCAGGTTGCGATTGCTCGCCGACACCACGCGGATATCCACCGGCACCGGTTCGCCACTGCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2577009‑2577167‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccactgcccaCCCAGGCCCGCCTGCTGCGCGTACTGCAGTCGCGCAGCATCCAGCCGCTGGGCAGTGGCGAACCGGTGCCGGTGGATATCCGCGTGGTGTCGGCGAGCAATCGCAACCTGGCCGACGAAGTGCGCGCCGGGCGCTTTCGCCAGGACCT < NC_002947/2577215‑2577068 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |