| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,460,558 | Δ1 bp | 7.7% | coding (914/1167 nt) | algJ ← | alginate O‑acetylase AlgJ |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,460,558 | 0 | T | . | 7.7% | 237.1 / 13.6 | 78 | coding (914/1167 nt) | algJ | alginate O‑acetylase AlgJ |
| Reads supporting (aligned to +/- strand): ref base T (45/27); new base . (2/4); total (47/31) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.08e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.48e-01 | |||||||||||
TTGGCAGATAACGTTCGGGGAATTCCCACACCACCACTTGTGGTGCGGCGTTCTTGAAGGCATCGCTTTGCAGGTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCGGGATCTGCTTGTCGGCGAACAACGCGTCGCCGGCGTCACCCTCGGCATCGACCGGCCGGGTGGTGCGTTTCTGCAGGTTGTCCGGG > NC_002947/1460412‑1460707 | ttGGCAGATAACGTTCGGGGAATTCCCACACCACCACTTGTGGTGCGGCGTTCTTGAAGGCATAGCTTTGCAGGTACTTGAGCAGCGTCGGTAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCtgctgcc > 2:825842/1‑149 (MQ=255) gCAGATAACGTTCGGGGAATTCCCACACCACCACTTGTGGTGCGGCGTTCTTGAAGGCATCGCTTTGCAGGTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAgcg > 1:752937/1‑150 (MQ=255) gCAGATAACGTTCGGGGAATTCCCACACCACCACTTGTGGTGCGGCGTTCTTGAAGGCATCGCTTTGCAGGTACTTGAGCATCGGCAGCAGCAGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAgcg > 1:264811/1‑150 (MQ=255) gATAACGTTCGGGGAATTCCCACACCACCACTTGTGGTGCGGCGTTCTTGAAGGCATCGCTTTGCAGGTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAgcgcgc > 1:354027/1‑150 (MQ=255) gATAACGTTCGGGGAATTCCCACACCACCACTTGTGGTGCGGCGTTCTTGAAGGCATCGCTTTGCAGGTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAgcgcgc > 1:1556323/1‑150 (MQ=255) aCGTGCGGGGAATTCCCACACCACCACTTGTGGTGCGGCGTTCTTGAAGGCATCGCTTTGCAGGTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGCATCAGGCCCTGC‑GCAgcgacgtcgc < 2:942562/150‑8 (MQ=255) gTTCGGGGAATTCCCACACCACCACTTGTGGTGCGGCGTTCTTGAAGGCATCGCTTTGCAGGTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCa > 1:1076883/1‑138 (MQ=255) gTTCGGGGAATTCCCACACCACCACTTGTGGTGCGGCGTTCTTGAAGGCATCGCTTTGCAGGTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCa < 2:1076883/138‑1 (MQ=255) gggAATTCCCACACCACCACTTGTGGTGCGGCGTTCTTGAAGGCATCGCTTTGCAGGTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTc > 2:1764856/1‑150 (MQ=255) gggAATTCCCACACCACCACTTGTGGTGCGGCGTTCTTGAAGGCATCGCTTTGCAGGTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTc > 2:1111381/1‑150 (MQ=255) aTTCCCACACCACCACTTGTGGTGCGGCGTTCTTGAAGGCATCGCTTTGCAGGTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAAGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGt > 2:1828804/1‑150 (MQ=255) ccACACCACCACTTGTGGTGCGGCGTTCTTGAAGGCATCGCTTTGCAGGTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGCAGCAGGCCCTGC‑GCAgc < 2:1051267/127‑1 (MQ=255) ccACACCACCACTTGTGGTGCGGCGTTCTTGAAGGCATCGCTTTGCAGGTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGCAGCAGGCCCTGC‑GCAgc > 1:1051267/1‑127 (MQ=255) cacaCCACCACTTGTGGTGCGGCGTTCTTGAAGGCATCGCTTTGCAGGTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAgc > 1:465957/1‑126 (MQ=255) cacaCCACCACTTGTGGTGCGGCGTTCTTGAAGGCATCGCTTTGCAGGTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAgc < 2:465957/126‑1 (MQ=255) cacaCCACCACTTGTGGTGCGGCGTTCTTGAAGGCATCGCTTTGCAGGTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCggg > 1:722164/1‑150 (MQ=255) acacCACCACTTGTGGTGCGGCGTTCTTGAAGGCATCGCTTTGCAGGTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGt > 1:1857778/1‑150 (MQ=255) caccaccacTTGTGGTGCGGCGTTCTTGAAGGCATCGCTTTGCAGGTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGtt < 1:1892014/150‑1 (MQ=255) caccacTTGTGGTGCGGCGTTCTTGAAGGCATCGCTTTGCAGGTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCGGGGCCTGCTGCAGCGCGCCAATTAAGGTCCAGTGCGGGTTGgc > 2:207752/1‑150 (MQ=255) caccacTTGTGGTGCGGCGTTCTTGAAGGCATCGCTTTGCAGGTACTTGAACATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCCAGGAAGTTCCAGTGCTGGTTGgc > 1:221948/1‑150 (MQ=255) ccacTTGTGGTGCGGCGTTCTTGAAGGCATCGCTTTGCAGGTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGgcgc > 1:1873917/1‑150 (MQ=255) ccacTTGTGGTGCGGCGTTCTTGAAGGCATCGCTTTGCAGGTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGgcgc > 2:1223291/1‑150 (MQ=255) cacTTGTGGTGCGGCGTTCTTGAAGGCATCGCTTTGCAGGTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCt > 1:1082930/1‑150 (MQ=255) cacTTGTGGTGCGGCGTTCTTGAAGGCATCGCTTTGCAGGTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCt < 1:1579569/150‑1 (MQ=255) gtgCGGCGTTCTTGAAGGCATCGCTTTGCAGGTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTgg < 1:1223291/150‑1 (MQ=255) tgCGGCGTTCTTGAAGGCATCGCTTTGCAGGTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGt > 1:501315/1‑150 (MQ=255) cggcgTTCTTGAAGGCATCGCTTTGCAGGTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGc < 2:136267/150‑1 (MQ=255) gcgTTCTTGAAGGCATCGCTTTGCAGGTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCt > 1:952976/1‑150 (MQ=255) ttCTTGAAGGCATCGCTTTGCAGGTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTAcc > 1:1270046/1‑150 (MQ=255) tCTTGAAGGCATCGCTTTGCAGGTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCa < 2:667718/150‑1 (MQ=255) aGGCATCGCTTTGCAGGTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCaa > 2:1231617/1‑150 (MQ=255) gCATCGCTTTGCAGGTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAAcc > 1:1107145/1‑150 (MQ=255) gCATCGCTTTGCAGGTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAAcc > 1:741210/1‑150 (MQ=255) aTCGCTTTGCAGGTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGTAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCgg > 2:980561/1‑150 (MQ=255) aTCGCTTTGCAGGTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCgg < 1:1415256/150‑1 (MQ=255) gTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGTAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCGGGATCTGCTTGTc < 2:542692/150‑1 (MQ=255) tACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCGGGATCTGCTTGTCg < 1:1231617/150‑1 (MQ=255) tACTTGACCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGCTGGCGCTGTAGCTGGGTGGTACCAGGGCAACCGGGATCTGCTTGTCg > 2:1753931/1‑150 (MQ=255) cTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCGGGATCTGCTTGTCGGc < 2:741210/150‑1 (MQ=255) ttGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAATGAAGTTCCAGTGCAGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCGGGATCTGCTTGTCGGCg > 2:1035322/1‑150 (MQ=255) ttGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCGGGATCTGCTTGTCGGCg > 2:764658/1‑150 (MQ=255) ttGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCGGGATCTGCTTGTCGGCg > 2:368383/1‑150 (MQ=255) ttGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCGGGATCTGCTTGTCGGCg > 2:1923282/1‑150 (MQ=255) tGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCGGGATCTGCTTGTCGGCGa > 2:1473208/1‑150 (MQ=255) gCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCGGGATCTGCTTGTCGGCGaaca > 1:208535/1‑150 (MQ=255) gCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCGGGATCTGCTTGTCGGCGaaca > 1:140062/1‑150 (MQ=255) tCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCGGGATCTGCTTGTCGGCGAACAAcg > 2:717395/1‑150 (MQ=255) tCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCGGGATCTGCTTGTCGGCGAACAAcg > 2:172493/1‑150 (MQ=255) gcagcaGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGCAGCAGGCCCTGC‑GCAgc > 1:165451/1‑65 (MQ=25) gcagcaGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGCAGCAGGCCCTGC‑GCAgc < 2:165451/65‑1 (MQ=25) gcagcaGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCGGGATCTGCTTGTCGGCGAACAACGCGt > 1:1731058/1‑150 (MQ=255) gcagcaGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCGGGATCTGCTTGTCGGCGAACAACGCGt > 2:761188/1‑150 (MQ=255) gcagcaGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAAACGGGATCTGCTTGTCGGCGAACAACGCGt > 1:39355/1‑150 (MQ=255) cagcagCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCGGGATCTGCTTGTCGGCGAACAACGCGTc < 1:717395/150‑1 (MQ=255) gcagcGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTg > 1:714384/1‑104 (MQ=255) gcagcGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTg < 2:714384/104‑1 (MQ=255) gCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCGGGATCTGCTTGTCGGCGAACAACGCGTCGCCGGCGTc < 2:1082930/150‑1 (MQ=255) cATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCGGGATCTGCTTGTCGGCGAACAACGCGTCGCCGGCGTCAc > 2:1623771/1‑150 (MQ=255) gCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCGGGATCTGCTTGTCGGCGAACAACGCGTCGCCGGCGTCACCCTc > 1:533267/1‑150 (MQ=255) gCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCGGGATCTGCTTGTCGGCGAACAACGCGTCGCCGGCGTCACCCTc > 1:1202123/1‑150 (MQ=255) cGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCGGGATCTGCTTGTCGGCGAACAACGCGTCGCCGGCGTCACCCTCgg < 1:139157/150‑1 (MQ=255) cGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCGGGATCTGCTTGTCGGCGAACAACGCGTCGCCGGCGTCACCCTCgg < 2:752937/150‑1 (MQ=255) ggCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCGGGATCTGCTTGTCGGCGAACAACGCGTCGCCGGCGTCACCCTCGGCATCGAc < 1:1111381/150‑1 (MQ=255) gCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCGGGATCTGCTTGTCGGCGAACAACGCGTCGCCGGCGTCACCCTCGGCATCGAcc > 2:247225/1‑150 (MQ=255) tAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCGGGATCTGCTTGTCGGCGAACAACGCGTCGCCGGCGTCACCCTCGGCATCGAccggc < 2:1731058/150‑1 (MQ=255) ggCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCGGGATCTGCTTGTCGGCGAACAACGCGTCGCCGGCGTCACCCTCGGCATCGACCGGCCGggt < 1:1764856/150‑1 (MQ=255) gACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCGGGATCTGCTTGTCGGCGAACAACGCGTCGCCGGCGTCACCCTCGGCATCGACCGGCCGggtggt < 2:1880536/150‑1 (MQ=255) aCGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCGGGATCTGCTTGTCGGCGAACAACGCGTCGCCGGCGTCACCCTCGGCATCGACCGGCCGGgtggtg < 2:952976/150‑1 (MQ=255) aCGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCGGGATCTGCTTGTCGGCGAACAACGCGTCGCCGGCGTCACCCTCGGCATCGACCGGCCGGgtggtg > 1:337366/1‑150 (MQ=255) gCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTAGCAGTGCAACCGGGATCTGCTTGTCGGCGAACAACGCGTCGCCGGCGTCACCCTCGGCATCGACCGGCCGGGTGGTGCGttt < 1:1771817/150‑1 (MQ=255) cTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCGGGATCTGCTTGTCGGCGAACAACGCGTCGCCGGCGTCACCCTCGGCATCGACCGGCCGGGTGGTGCGTTTc < 2:264811/150‑1 (MQ=255) gc‑gcAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCGGGATCTGCTTGTCGGCGAACAACGCGTCGCCGGCGTCACCCTCGGCATCGACCGGCCGGGTGGTGCGTTTCTg < 1:761188/150‑1 (MQ=255) agcAGGCCCTGC‑GCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCGGGATCTGCTTGTCGGCGAACAACGCGTCGCCGGCGTCACCCTCGGCATCGACCGGCCGGGTGGTGCGTTTCTGCa < 1:474043/149‑1 (MQ=255) gcAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCGGGATCTGCTTGTCGGCGAACAACGCGTCGCCGGCGTCACCCTCGGCATCGACCGGCCGGGTGGTGCGTTTCTGCa < 2:337366/150‑1 (MQ=255) gcAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCGGGATCTGCTTGTCGGCGAACAACGCGTCGCCGGCGTCACCCTCGGCATCGACCGGCCGGGTGGTGCGTTTCTGCa < 2:1243240/150‑1 (MQ=255) aGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCGGGATCTGCTTGTCGGCGAACAACGCGTCGCCGGCGTCACCCTCGGCATCGACCGGCCGGGTGGTGCGTTTCTGCAgg > 2:437004/1‑150 (MQ=255) aGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCGGGATCTGCTTGTCGGCGAACAACGCGTCGCCGGCGTCACCCTCGGCATCGACCGGCCGGGTGGTGCGTTTCTGCAgg > 2:1066830/1‑150 (MQ=255) gggCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCGGGATCTGCTTGTCGGCGAACAACGCGTCGCCGGCGTCACCCTCGGCATCGACCGGCCGGGTGGTGCGTGTCTGCAGGt > 1:248502/1‑150 (MQ=255) ggCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCGGGATCTGCTTGTCGGCGAACAACGCGTCGCCGGCGTCACCCTCGGCATCGACCGGCCGGGTGGTGCGTTTCTGCAGGtt < 1:1923282/150‑1 (MQ=255) ctgctgCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCGGGATCTGCTTGTCGGCGAACAACGCGTCGCCGGCGTCACCCTCGGCATCGACCGGCCGGGTGGTGCGTTTCTGCAGGTTGTc > 2:1148420/1‑150 (MQ=255) ctgcAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCGGGATCTGCTTGTCGGCGAACAACGCGTCGCCGGCGTCACCCTCGGCATCGACCGGCCGGGTGGTGCGTTTCTGCAGGTTGTCCgg < 2:85688/150‑1 (MQ=255) tgcAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCGGGATCTGCTTGTCGGCGAACAACGCGTCGCCGGCGTCACCCTCGGCATCGACCGGCCGGGTTGTGCGTTTCTGCAGGTTGTCCggg < 2:1282288/150‑1 (MQ=255) tgcAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCGGGATCTGCTTGTCGGCGAACAACGCGTCGCCGGCGTCACCCTCGGCATCGACCGGCCGGGTGGTGCGTTTCTGCAGGTTGTCCggg < 1:764658/150‑1 (MQ=255) tgcAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCGGGATCTGCTTGTCGGCGAACAACGCGTCGCCGGCGTCACCCTCGGCATCGACCGGCCGGGTGGTGCGTTTCTGCAGGTTGTCCggg < 1:368383/150‑1 (MQ=255) tgcAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCGGGATCTGCTTGTCGGCGAACAACGCGTCGCCGGCGTCACCCTCGGCATCGACCGGCCGGGTGGTGCGTTTCTGCAGGTTGTCCggg > 2:163776/1‑150 (MQ=255) tgcAGCGCGCCAAGGAAGTCCCAGTGCGGGATGGCGCTGTAGCTTGTGCCTACCAGTGCAACCGGGATCTGCTTGTCGGCGAACAACGCGTCGCCGGCGTCACCCTCGGCATCGACCGGCCGGGTGGTGCGTTTCTGCAGGTTGTCCggg < 2:208535/150‑1 (MQ=255) | TTGGCAGATAACGTTCGGGGAATTCCCACACCACCACTTGTGGTGCGGCGTTCTTGAAGGCATCGCTTTGCAGGTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCGGGATCTGCTTGTCGGCGAACAACGCGTCGCCGGCGTCACCCTCGGCATCGACCGGCCGGGTGGTGCGTTTCTGCAGGTTGTCCGGG > NC_002947/1460412‑1460707 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |