| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,570,230:1 | +A | 8.3% | coding (70/861 nt) | nnrD ← | ADP‑dependent (S)‑NAD(P)H‑hydrate dehydratase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,570,230 | 1 | . | A | 8.3% | 354.0 / 27.8 | 96 | coding (70/861 nt) | nnrD | ADP‑dependent (S)‑NAD(P)H‑hydrate dehydratase |
| Reads supporting (aligned to +/- strand): ref base . (40/48); new base A (3/5); total (43/53) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.27e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.36e-01 | |||||||||||
Only 100 of 104 total aligned reads displayed.
GTGCTCGGGCCGGGTTGCCACGCTGACCAGCCCGGCGCCGCAACGCAGGGCGGCTTCGGCACTGAGCAACACAGCGCCTCCGGTACCCAGGTCGCCCCCGACCACCAGTACATGGCCAAAGTCGCCTTTGTGGGCATGCGCCTGCCGTGC‑CGGCAGGCGGGCAACCGTCACGCTGCTGAGCAATTGTGGGGCATTACTGGGGTGTTTGGTCTGCGGCATGGGGTCAAAGGCTCCAATGTCTGGCAGAATTATACGCACCTGAGCCCGTATTGCCTTGCCCATCCATGTCC > NC_002947/5570081‑5570370 | gTGCTCGGGCCGGGTTGCCACGCTGACCAGCCCGGCGCCGCAACGCAGGGCGGCTTCGGCACTGAGCAACACGGCGCCTCCGGTACCCAGGTCGCCCCCGACCACCAGTACATGGCTAAAGTCGCCTTTGTGGGCATGCGCCtgccgtgc < 1:357950/150‑1 (MQ=255)gTGCTCGGGCCGGGTTGCCACGCTGACCAGCCCGGCGCCGCAACGCAGGGCGGCTTCGGCACTGAGCAACACAGCGCCTCCGGTACCCAGGTCGCCCCCGACCACCAGTACATGGCCAAAGTCGCCTTTGTGGGCATGCGCCtgccgtgc < 2:1777618/150‑1 (MQ=255)gTGCTCGGGCCGGGTTGCCACGCTGACCAGCCCGGCGCCGCAACGCAGGGCGGCTTCGGCACTGAGCAACACAGCGCCTCCGGTACCCAGGTCGCCCCCGACCACCAGTACATGGCCAAAGTCGCCTTTGTGGGCATGCGCCtgccgtgc > 1:813547/1‑150 (MQ=255)gTGCTCGGGCCGGGTTGCCACGCTGACCAGCCCGGCGCCGCAACGCAGGGCGGCTTCGGCACTGAGCAACACAGCGCCTCCGGTACCCAGGTCGCCCCCGACCACCAGTACATGGCCAAAGTCGCCTTTGTGGGCATGCGCCtgccgtgc < 2:632900/150‑1 (MQ=255) tCGNGCCGGGTTGCCACGCTGACCAGCCCGGCGCCGCAACGCAGGGCGGCTTCGGCACTGAGCAACACAGCGCCTCCGGTACCCAGGTCGCCCCCGACCACCAGTACATGGCCAAAGTCGCCTTTGTGGGCATGCGCCTGCCGTGC‑CGGc > 2:1195303/1‑150 (MQ=255) ggCCGGGTTGCCACGCTGACCAGCCCGGCGCCGCAACGCAGGGCGGCTTCGACACTGAGCAACACAGCGCCTCCGGTACCCAGGTCGCCCCCGACCACCAGTACATGGCCAAAGTCGCCTTTGTGGGCATGCGCCTGCCGTGC‑CGGGAgg > 2:748654/1‑150 (MQ=255) gCCGGGTTGCCACGCTGACCAGCCCGGCGCCGCAACGCAGGGCGGCTTCGGCACTGAGCAACACAGCGCCTCCGGTACCCAGGTCGCCCCCGACCACCAGTACATGGCCAAAGTCGCCTTTGTGGTCATGCGCCTGCCG‑GCACGGCAGGc < 1:628477/150‑1 (MQ=255) gCCGGGTTGCCACGCTGACCAGCCCGGCGCCGCAACGCAGGGCGGCTTCGGCACTGAGCAACACAGCGCCTCCGGTACCCAGGTCGCCCCCGACCACCAGTACATGGCCAAAGTCGCCTTTGTGGGCATGCGCCTGCCGGCA‑CGGCAGGc < 2:429794/150‑1 (MQ=255) gCCGGGTTGCCACGCTGACCAGCCCGGCGCCGCAACGCAGGGCGGCTTCGGCACTGAGCAACACAGCGCCTCCGGTACCCAGGTCGCCCCCGACCACCAGTACATGGCCAAAGTCGCCTTTGTGGGCATGCGCCTGCCG‑GCACGGCAGGc < 1:1849486/150‑1 (MQ=255) ccGGGTTGCCACGCTGACCAGCCCGGCGCCGCAACGCAGGGCGGCTTCGGCACTGAGCAACACAGCGCCTCCGGTACCCAGGTCGCCCCCGACCACCAGTACATGGCCAAAGTCGCCTTTGTGGGCATGCGCCTGCCG‑GCACGGCAGGCg < 2:1301912/150‑1 (MQ=255) cGGGTTGCCACGCTGACCAGCCCGGCGCCGCAACGCAGGGCGGCTTCGGCACTGAGCAACACAGCGCCTCCGGTACCCAGGTCGCCCCCGACCACCAGTACATGGCCAAAGTCGCCTTTGTGGGCATGCGCCTGCCGTGC‑CGGCAGGCgg < 1:166897/150‑1 (MQ=255) cGGGTTGCCACGCTGACCAGCCCGGCGCCGCAACGCAGGGCGGCTTCGGCACTGAGCAACACAGCGCCTCCGGTACCCAGGTCGCCCCCGACCACCAGTACATGGCCAAAGTCGCCTTTGTGGGCATGCGCCTGCCGTGC‑CGGCAGGCgg < 1:1195303/150‑1 (MQ=255) cGGGTTGCCACGCTGACCAGCCCGGCGCCGCAACGCAGGGCGGCTTCGGCACTGAGCAACACAGCGCCTCCGGTACCCAGGTCGCCCCCGACCACCAGTACATGGCCAAAGTCGCCTTTGTGGGCATGCGCCTGCCGTGC‑CGGCAGGCgg < 1:337242/150‑1 (MQ=255) ggTTGCCACGCTGACCAGCCCGGCGCCGCAACGCAGGGCGGCTTCGGCACTGAGCAACACAGCGCCTCCGGTACCCAGGTCGCCCCCGACCACCAGTACATGGCCAAAGTCGCCTTTGTGGGCATGCGCCTGCCGTGC‑CGGCAGGCGGGc < 2:756649/150‑1 (MQ=255) ttGCCACGCTGACCAGCCCGGCGCCGCAACGCAGGGCGGCTTCGGCACTGAGCAACACAGCGCCTCCGGTACCCAGGTCGCCCCCGACCACCAGTACATGGCCAAAGTCGCCTTTGTGGGCATGCGCCTGCCGTGC‑CGGCAGGCGGGCaa < 1:1311543/150‑1 (MQ=255) ttGCCACGCGGGCCAGCGCGGCGCCGCAACGCAGGGCGGCTTCGGCACTGAGCAACACAGCGCCTCCGGTACCCAGGTCGCCCCCGACCACCAGTACATGGCCAAAGGCGCCTTTGTGGGCATGCGCCTGCCGTGC‑CGGCAGGCGGGCaa < 2:830315/150‑1 (MQ=255) cACGCTGACCAGCCCGGCGCCGCAACGCAGGGCGGCTTCGGCACTGAGCAACACAGCGCCTCCGGTACCGAGGTGCTTCCCGACCACCAGTACATGGCCCAAATCGCCGGTGTGCGCATCCGCCTGCCGTGC‑CGGCAGGCGGGCAACCGt > 1:424998/1‑150 (MQ=255) cGCTGACCAGCCCGGCGCCGCAACGCAGGGCGGCTTCGGCACTGAGCAACACAGCGCCTCCGGTACCCAGGTCGCCCCCGACCACCAGTACATGGCCAAAGTCGCCTTTGTGGGCATGCGCCTGCCGTGC‑CGGCAGGCGGGCAACCGTCa > 2:1511237/1‑150 (MQ=255) cGCTGACCAGCCCGGCGCCGCAACGCAGGGCGGCTTCGGCACTGAGCAACACAGCGCCTCCGGTACCCAGGTCGCCCCCGACCACCAGTACATGGCCAAAGTCGCCTTTGTGGGCATGCGCCTGCCGTGC‑CGGCAGGCGGGCAACCGTCa < 1:107499/150‑1 (MQ=255) tgctcAGCCCGGCGCCGCAACGCAGGGCGGCTTCGGCACGGAGCAACACAGCGCCTCCGGTACCCAGGTCGCCCCCGACCACCAGTACATGGCCAAAGTCGCCTTTGTGGGCATGCGCCTGCCCTGC‑AGCTGGTCGGGCAACCGTCACgc < 2:1114540/146‑1 (MQ=255) tGACCAGCCCGGCGCCGCAACGCAGGGCGGCTTCGGCACTGAGCAACACAGCGCCTCCGGTACCCAGGTCGCCCCCGACCACCAGTACATGGCCAAAGTCGCCTTTGTGGGCATGCGCCTGCCGTGC‑CGGCAGGCGGGCAACCGTCACgc < 2:1114526/150‑1 (MQ=255) ccAGCCCGGCGCGGCAACGCAGGGCGGCTGCGGCACTGAGCAACACAGCGCCTCCGGTACCCAGGTCGCCCCCGACCACCAGTACATGGCCAAAGTCGCCTTTGTGGGCATGCGCCTGCCGTGC‑CGGCAGGCGGGCAACCGTCACgctgc < 1:644091/150‑1 (MQ=255) cAGCCCGGCGCCGCAACGCAGGGCGGCTTCGGCACTGAGCAACACAGCGCCTCCGGTACCCAGGTCGCCCCCGACCACCAGTACATGGCCAAAGTCGCCTTTGTGGGCATGCGCCTGCCGGGC‑CGGCAGGCGGGCAACCGTCACgctgct > 1:865737/1‑150 (MQ=255) aGCCCGGCGCCGCAACGCAGGGCGGCTTCGGCACTGAGCAACACAGCGCCTCCGGTACCCAGGTCGCCCCCGACCACCAGTACATGGCCAAAGTCGCCTTTGTGGGCATGCGCCTGCCGTGC‑CGGCAGGCGGGCAACCGTCACGctgctg > 1:1404503/1‑150 (MQ=255) aGCCCGGCGCCGCAACGCAGGGCGGCTTCGGCACTGAGCAACACAGCGCCTCCGGTACCCAGGTCGCCCCCGACCACCAGTACATGGCCAAAGTCGCCTTTGTGGGCATGCGCCTGCCGTGC‑CGGCAGGCGGGCAACCGTCACGctgctg < 1:1295235/150‑1 (MQ=255) gCCCGGCGCCGCAACGCAGGGCGGCTTCGGCACTGAGCAACACAGCGCCTCCGGTACCCAGGTCGCCCCCGACCACCAGTACATGGCCAAAGTCGCCTTTGTGGGCATGCGCCTGCCGTGC‑CGGCAGGCGGGCAACCGTCACGCTGCTGa > 1:1726514/1‑150 (MQ=255) cgacgccgcAACGCAGGGCGGCTTCGGCACTGAGCAACACAGCGCCTCCGGTACCCAGGTCGCCCCCGACCACCAGTACATGGCCAAAGTCGCCTTTGTGGGCATGCGCCTGCCGTGC‑CGGCAGGCGTGCAACCGTCACGCTGCTGAGCa > 1:878637/4‑150 (MQ=255) cGGCGCCGCAACGCAGGGCGGCTTCGGCACTGAGCAACACAGCGCCTCCGGTACCCAGGTCGCCCCCGACCACCAGTACATGGCCAAAGTCGCCTTTGTGGGCATGCGCCTGCCGTGC‑CGGCAGGCGGGCAACCGTCACGCTGCTGAGCa > 2:715421/1‑150 (MQ=255) cgcAACGCAGGGCGGCTTCGGCACTGAGCAACACAGCGCCTCCGGTACCCAGGTCGCCCCCGACCACCAGTACATGGCCAAAGTCGCCTTTGTGGGCATGCGCCTGCCGTGC‑CGGCAGGCGGGCAACCGTCACGCTGCTGAGCAATtgtg < 1:150025/150‑1 (MQ=255) cgcAACGCAGGGCGGCTTCGGCACTGAGCAACACAGCGCCTCCGGTACCCAGGTCGCCCCCGACCACCAGTACATGGCCAAAGTCGCCTTTGTGGGCATGCGCCTGCCGTGC‑CGGCAGGCGGGCAACCGTCACGCTGCTGAGCAATtgtg < 2:314101/150‑1 (MQ=255) gcAAGGCAGGGCGGCTTCGGCACTGAGCAACACGGCGCCGCCGGTATCCAGGTCGCCCCCGACCACCAGTACATGGCCAAAGTCGCCTTTGTGGGCATGCGCCTGCCGTGC‑CGGCAGGCGTGCAACCGTCACGCTGCCGAGCAATTGTgg < 2:692495/150‑1 (MQ=255) gcAACGCAGGGCGGCTTCGGCACTGAGCAACACAGCGCCTCCGGTACCCAGGCCGCCCCCGACCACCAGTACATGGCCAAAGTCGCCTTTGTGGGCATGCGCCTGCCGTGC‑CGGCAGGCGGGCAACCGTCACGCTGCTGGGCAATCGTgg > 2:1156906/1‑150 (MQ=255) gcAACGCAGGGCGGCCGCGGCACTGAGCAACACAGCGCCCGCGGGACCCAGGTCGCCCCCGACCACCAGTACATGGCCAAAGTCGCCTTTGTGGGCATGCGCCTGCCGTGC‑CGGCAGGCGGGCAACCGTCACGCTGCTGAGCAATTGTgg < 2:423247/150‑1 (MQ=255) aaCGCAGGGCGGCTTCGGCACTGAGCAACACAGCGCCTCCGGTACCCAGGTCGCCCCCGACCACCAGTACATGGCCAAAGTCGCCTTTGTGGGCATGCGCCTGCCGGCA‑CGGCAGGCgcat > 1:684031/1‑118 (MQ=255) aaCGCAGGGCGGCTTCGGCACTGAGCAACACAGCGCCTCCGGTACCCAGGTCGCCCCCGACCACCAGTACATGGCCAAAGTCGCCTTTGTGGGCATGCGCCTGCCG‑GCACGGCAGGCgcat < 2:684031/121‑4 (MQ=255) cggcTTCGGCACTGAGCAACACAGCGCCTCCGGTACCCAGGTCGCCCCCGACCACCAGTACATGGCCAAAGTCGCCTTTGTGGGCATGCGCCTGCCGTGC‑CGGCAGGCGGGCAACCGTCACGctgctg > 1:851560/1‑128 (MQ=255) cggcTTCGGCACTGAGCAACACAGCGCCTCCGGTACCCAGGTCGCCCCCGACCACCAGTACATGGCCAAAGTCGCCTTTGTGGGCATGCGCCTGCCGTGC‑CGGCAGGCGGGCAACCGTCACGctgctg < 2:851560/128‑1 (MQ=255) ggcTTCGGCACTGAGCAACACAGCGCCTCCGGTACCCAGGTCGCCCCCGACCACCAGTACATGGCCAAAGTCGCCTTTGTGGGCATGCGCCTGCCGTGC‑CGGCAGGCGGGCAACCGTCACGCTGCTGAGCAATTGTGGGGCATTACNggg < 2:1191731/150‑1 (MQ=255) gcTTCGGCACTGAGCAACACAGCGCCTCCGGTACCCAGGTCGCCCCCGACCACCAGTACATGGCCAAAGTCGCCTTTGTGGGCATGCGCCTGCCGGCA‑CGGCAGGCgc < 1:72294/108‑2 (MQ=255) gcTTCGGCACTGAGCAACACAGCGCCTCCGGTACCCAGGTCGCCCCCGACCACCAGTACATGGCCAAAGTCGCCTTTGTGGGCATGCGCCTGCCG‑GCACGGCAGGCgc > 2:72294/1‑107 (MQ=255) ttCGGCACTGAGCAACACAGCGCCTCCGGTACCCAGGTCGCCCCCGACCACCAGTACATGGCCAAAGTCGCCTTTGTGGGCATGCGCCTGCCGTGC‑CGGCAGGCGGGCAACCGTCACGCTGCTGAGCAATTGTGGGGCATTACTGGGgtg > 1:870566/1‑150 (MQ=255) cGGCACTGAGCAACACAGCGCCTCCGGTACCCAGGTCGCCCCCGACCACCAGTACATGGCCAAAGTCGCCTTTGTGGGCATGCGCCTGCCGTGC‑CGGCAGGCGGGCAACCGTCACGCTGCTGAGCAATTGTGGGGCATTACTGGGGTGtt < 2:1596896/150‑1 (MQ=255) gCACTGAGCAACACAGCGCCTCCGGTCCACCGAATCCCCCCTGCCACCAGTACATGGCCAAAGTCGCCTTTGTGGGCATGCCCCTGCCGTGC‑CGGCAGGCGGGCAACCGTCACGCTGCTGAGCAATTGTGGGGCATTACTGGGGTGTTTg < 2:1096045/150‑1 (MQ=255) tGAGCAACACAGCGCCTCCGGTACCCAGGTCGCCCCCGACCACCAGTACATGGCCAAAGTCGCCTTTGTGGGCATGCGCCTGCCGTGC‑CGGCAGGCGGGCAACCGTCACGCTGCTGAGCAATTGTGGGGCATTACTGGGGTGttt < 1:73913/145‑1 (MQ=255) tGAGCAACACAGCGCCTCCGGTACCCAGGTCGCCCCCGACCACCAGTACATGGCCAAAGTCGCCTTTGTGGGCATGCGCCTGCCGTGC‑CGGCAGGCGGGCAACCGTCACGCTGCTGAGCAATTGTGGGGCATTACTGGGGTGttt > 2:73913/1‑145 (MQ=255) gAGCAACACAGCGCCTCCGGTACCCAGGTCGCCCCCGACCACCAGTACATGGCCAAAGTCGCCTTTGTGGGCATGCGCCTGCCGTGA‑CGGCACCCGCGAAACCACAACACTGCTGAGTATTTTTTGTTCATTACTGGGGTGTTTGGTCTg > 2:682141/1‑150 (MQ=255) acacAGCGCCTCCGGTACCCAGGTCGCCCCCGACCACCAGTACATGGCCAAAGTCGCCTTTGTGGGCATGCGCCTGCCGTGC‑CGGCAGGCGGGCAACCGTCACGCTGCTGAGCAATTGTGGGGCATTACTGGGGTGTTTg < 2:1833413/140‑1 (MQ=255) acacAGCGCCTCCGGTACCCAGGTCGCCCCCGACCACCAGTACATGGCCAAAGTCGCCTTTGTGGGCATGCGCCTGCCGTGC‑CGGCAGGCGGGCAACCGTCACGCTGCTGAGCAATTGTGGGGCATTACTGGGGTGTTTg > 1:1833413/1‑140 (MQ=255) acaGCGCCTCCGGTACCCAGGTCGCCCCCGACCACCAGTCAATCGCTCTTGCGGGCGGTTTGTGCATGCGCCTGCCGTGC‑CGGCAGGCGGGCAACCGTCACGCTGCTGAGCAATTGTGGGGCATTACTGGGGTGTTTGGTCTGCGGCATg < 2:1483719/150‑1 (MQ=255) acaGCGCCTCCGGTACCCAGGTCGCCCCCGACCACCAGTACATGGCCAAAGTCGCCTTTGTGGGCATGCGCCTGCCGTGC‑CGGCAGGCGGGCAACCGTCACGCTGCTGAGCAATTGTGGGGCATTACTGGGGTGTTTGGTCTGCGGCATg < 2:1748035/150‑1 (MQ=255) cccGGTACCCAGGTCGCCCCCGACCACCAGTACATGGCCAAAGTCGCCTTTGTGGGCATGCGCCTGCCGTGC‑CGGCAGGCGGGCAACCGTCACGCTGCTGAGCAATTGTGGGGCATTACTGGGGTGTTTGGTCTGCGGCATGGGGTCaaa < 1:203351/149‑1 (MQ=255) cGGTACCCAGGTCGCCCCCGACCACCAGTACATGGCCAAAGTCGCCTTTGTGGGCATGCGCCTGCCGTGC‑CGGCAGGCGGGCAACCGTCACGCTGCTGAGCAATTGTGGGGCATTACTGGGGTGTTTGGTCTGCGGCATGGGGTCAAAgg < 2:1062565/150‑1 (MQ=255) ggaCCTAGGTCGCCCCCGACTACCAGTACATGGCCAAAGTCGCCTTTGTGGGCATGCGCCTGCCGTGC‑CGGCAGGCGGGCAACCGTCACGCTGCTGAGCACTTGTGGGGCATTACTGGGGTGTTTGGTCTGCGGCATGGGGTCAAAGGCt < 2:570451/148‑1 (MQ=255) tACCCAGGTCGCCCCCGACCACCAGTACATGGCCAAAGTCGCCTTTGTGGGCATGCGCCTGCCGTGC‑CGGCAGGCGGGCAACCGTCACGCTGCTGAGCAATTGTGGGGCATTACTGGGGTGTTTGGTCTGCGGCATGGGGTCAAAGGCTc < 2:1404503/150‑1 (MQ=255) gTCGCCCCCGACCACCAGTACATGGCCAAAGTCGCCTTTGTGGGCATGCGCCTGCCGTGC‑CGGCAGGCGGGCAACCGTCACGCTGCTGAGCAATTGTGGGGCATTACTGGGGTGTTTGGTCTGCGGCATGGGGTCAAAGGCTCCAATGTc < 1:428203/150‑1 (MQ=255) tCGCCCCCGACCACCAGTACATGGCCAAAGTCGCCTTTGTGGGCATGCGCCTGCCGTGC‑CGGCAGGCGGGCAACCGTCACGCTGCTGAGCAATTGTGGGGCATTACTGGGGTGTTTGGTCTGCGGCATGGGGTCAAAGGCTCCAATGTCt < 2:210688/150‑1 (MQ=255) cGCCCCCGACCACCAGTACATGGCCAAAGTCGCCTTTGTGGGCATGCGCCTGCCGTGC‑CGGCAGGCGGGCAACCGTCACGCTGCTGAGCAATTGTGGGGCATTACTGGGGTGTTTGGTCTGCGGCATGGGGTCAAAGGCTCCAATGTCTg > 1:450592/1‑150 (MQ=255) gCCCCCGACCACCAGTACATGGCCAAAGTCGCCTTTGTGGGCATGCGCCTGCCGTGC‑CGGCAGGCGGGCAACCGTCACGCTGCTGAGCAATTGTGGGGCATTACTGGGGTGTTTGGTCTGCGGCATGGGGTCAAAGGCTCCAATGTCTgg < 1:715421/150‑1 (MQ=255) cccccGACCACCAGTACATGGCCAAAGTCGCCTTTGTGGGCATGCGCCTGCCGTGC‑CGGCAGGCGGGCAACCGTCACGCTGCTGAGCAATTGTGGGGCATTACTGGGGTGTTTGGTCTGCGGCATGGGGTCAAAGGATCCAATGTCTGGc > 1:321371/1‑150 (MQ=255) ccaGTACATGGCCAAAGTCGCCTTTGTGGGCATGCGCCTGCCGTGC‑CGGCAGGCGGGCAACCGTCACGCTGCTGAGCAATTGTGGGGCATTACTGGGGTGTTTGGTCTGCGGCATGGGGTCAAAGGCTCCAATGTCTGGCAGAATTATAc < 2:1304403/150‑1 (MQ=255) caGTACATGGCCAAAGTCGCCTTTGTGGGCATGCGCCTGCCGTGC‑CGGCAGGCGGGCAACCGTCACGCTGCTGAGCAATTGTGGGGCATTACTGGGGTGTTTGGTCTGCGGCATGGGGTCAAAGGCTCCAATGTCTgg < 1:1115069/138‑1 (MQ=255) caGTACATGGCCAAAGTCGCCTTTGTGGGCATGCGCCTGCCGTGC‑CGGCAGGCGGGCAACCGTCACGCTGCTGAGCAATTGTGGGGCATTACTGGGGTGTTTGGTCTGCGGCATGGGGTCAAAGGCTCCAATGTCTGGCa < 2:1342113/140‑1 (MQ=255) caGTACATGGCCAAAGTCGCCTTTGTGGGCATGCGCCTGCCGTGC‑CGGCAGGCGGGCAACCGTCACGCTGCTGAGCAATTGTGGGGCATTACTGGGGTGTTTGGTCTGCGGCATGGGGTCAAAGGCTCCAATGTCTGGCa > 1:1342113/1‑140 (MQ=255) caGTACATGGCCAAAGTCGCCTTTGTGGGCATGCGCCTGCCGTGC‑CGGCAGGCGGGCAACCGTCACGCTGCTGAGCAATTGTGGGGCATTACTGGGGTGTTTGGTCTGCGGCATGGGGTCAAAGGCTCCAATGTCTGGCAGAATTATACg > 2:860364/1‑150 (MQ=255) gTACATGGCCAAAGTCGCCTTTGTGGGCATGCGCCTGCCGTGC‑CGGCAGGCGGGCAACCGTCACGCTGCTGAGCAATTGTGGGGCATTACTGGGGTGTTTGGTCTGCGGCATGGGGTCAAAGGCTCCAATGTCTGGCAGAATTATACGCa > 1:79503/1‑150 (MQ=255) tACATGGCCAAAGTCGCCTTTGTGGGCATGCGCCTGCCGTGC‑CGGCAGGCGGGCAACCGTCACGCTGCTGAGCAATTGTGGGGCATTACTGGGGTGTTTGGTATGAGGCATCGCGTCAAAGGGTCCAATGTCTGGCAGAATTATCCGCAc < 2:878637/150‑1 (MQ=255) ggCCAAAGTCGCCTTTGTGGGCATGCGCCTGCCGTGC‑CGGCAGGCGGGCAACCGTCACGCTGCTGAGCAATTGTGGGGCATTACTGGGGTGTTTGGTCTGCGGCATGGGGTCAAAGGCTCCAATGTCTGGCAGAATTATACGCACCTGAg > 2:1806995/1‑150 (MQ=255) ccacAAAGGCGACTTTGTGGGCATGCGCCTGCCGTGC‑CGGCAGGCGGGCAACCGTCACGCTGCTGAGCAATTGTGGGGCATTACTGGGGTGTTTGGTCTGCGGCATGGGATCAAAGGCTCCAATGTCTGGCAGAATTATACGCACCTGAg > 1:869734/4‑150 (MQ=255) ccAAAGTCGCCTTTGTGGGCATGCGCCTGCCGTGC‑CGGCAGGCGGGCAACCGTCACGCTGCTGAGCAATTGTGGGGCATTACTGGGGTGTTTGGTCTGCGGCATGGGGTCAAAGGCTCCAATGTCTg > 1:28299/1‑127 (MQ=255) ccAAAGTCGCCTTTGTGGGCATGCGCCTGCCGTGC‑CGGCAGGCGGGCAACCGTCACGCTGCTGAGCAATTGTGGGGCATTACTGGGGTGTTTGGTCTGCGGCATGGGGTCAAAGGCTCCAATGTCTg < 2:28299/127‑1 (MQ=255) cAAAGTCGCCTTTGTGGGCATGCGCCTGCCGTGC‑CGGCAGGCGGGCAACCGTCACGCTGCTGAGCAATTGTGGGGCATTCCCCGGGTGCTTGGTCTCCGGCATGGGGTCAAAGGCTACAATGTCTGGCAGAATTATACGCACCTGAGccc > 1:1467859/1‑150 (MQ=255) cAAAGTCGCCTTTGTGGGCATGCGCCTGCCGTGC‑CGGCAGGCGGGCAACCGTCACGCTGCTGAGCAATTGTGGGGCATTAGTGGGGTGTTTGGTCTGCGGCATGGGGTCAAAGGCTCCAATGTCTGGCAGAATTATACGCACCTGAGccc < 2:589321/150‑1 (MQ=255) aaaGTCGCCTTTGTGGGCATGCGCCTGCCGTGC‑CGGCAGGCGGGCAACCGTCACGCTGCTGAGCAATTGTGGGGCATTACTGGGGTGTTTGGTCTGCGGCATGGGGTCAAAGGCTCCAATGTCTGGCAGAATTATACGCACCTGAGCCCg > 2:607654/1‑150 (MQ=255) aaGTCGCCTTTGTGGGCATGCGCCTGCCGTGC‑CGGCAGGCGGGCAACCGTCACGCTGCTGAGCAATTGTGGGGCATTACTGGGGTGTTTGGTCTGCGGCATGGGGTCAAAGGCTCCAATGTCTGGCAGAATTATACGCAc > 2:1224658/1‑140 (MQ=255) aaGTCGCCTTTGTGGGCATGCGCCTGCCGTGC‑CGGCAGGCGGGCAACCGTCACGCTGCTGAGCAATTGTGGGGCATTACTGGGGTGTTTGGTCTGCGGCATGGGGTCAAAGGCTCCAATGTCTGGCAGAATTATACGCAc < 1:1224658/140‑1 (MQ=255) gCCTTTGTGGGCATGCGCCTGCCGTGC‑CGGCAGGCGGGCAACCGTCACGCTGCTGAGAAATTGTGGGGCATTACCGTTTGGTTTGTTCTGCGGCATGGGGTCAAAGGCTCCAATGTCTGGCAGAATTATACGCACCTGAGCCCGTAttgc > 1:704273/1‑150 (MQ=255) tttGTGGGCATGCGCCTGCCGTGC‑CGGCAGGCGGGCAACCGTCACGCTGCTGAGCAATTGTGGGGCATTa < 1:1495265/70‑1 (MQ=255) tttGTGGGCATGCGCCTGCCGTGC‑CGGCAGGCGGGCAACCGTCACGCTGCTGAGCAATTGTGGGGCATTa > 2:1495265/1‑70 (MQ=255) tttGTGGGCATGCGCCTGCCGTGC‑CGGCAGGCGGGCAACCGTCACGCTGCTGAGCAATTGTGGGGCATTACTGGGGTGTTTGGTCTGCGGCATGGGGTCAAAGGCTCCAATGTCTGGCAGAATTATACGCACCTGAGCCCGTAttgcctt < 1:1511237/150‑1 (MQ=255) ttGTGGGCATGCGCCTGCCGTGC‑CGGCAGGCGGGCAACCGTCACGCTGCTGAGCACTTGTGGGGCATTACTGGGGTGTTTGGTCTGCGGCATGGGGTCAAAGGCTCCAATGTCTGGCAGAATTATACGCACCTGAGCCCGTAttgccttg < 2:389393/150‑1 (MQ=255) gggCATGCGCCTGCCGTGC‑CGGCAGGCGGGCAACCGTCACGCTGCTGAGCAATTGTGGGGCATTACTGGGGTGTTTGGTCTGCGGCATgggg > 2:1759878/1‑92 (MQ=255) gggCATGCGCCTGCCGTGC‑CGGCAGGCGGGCAACCGTCACGCTGCTGAGCAATTGTGGGGCATTACTGGGGTGTTTGGTCTGCGGCATgggg < 1:1759199/92‑1 (MQ=255) gggCATGCGCCTGCCGTGC‑CGGCAGGCGGGCAACCGTCACGCTGCTGAGCAATTGTGGGGCATTACTGGGGTGTTTGGTCTGCGGCATgggg < 1:1759878/92‑1 (MQ=255) gggCATGCGCCTGCCGTGC‑CGGCAGGCGGGCAACCGTCACGCTGCTGAGCAATTGTGGGGCATTACTGGGGTGTTTGGTCTGCGGCATgggg > 2:1759199/1‑92 (MQ=255) gggCATGCGCCTGCCGTGC‑CGGCAGGCGGGCAACCGTCACGCTGCTGAGCAATTGTGGGGCATTACTGGGGTGTTTGGTCTGCGGCATGGGGTCAAAGGCTCCAATGTCTGGCAGAATTATACGCACCTGAGCCCGTATTGCCTTGCcca < 2:1726514/150‑1 (MQ=255) gggCATGCGCCTGCCGTGC‑CGGCAGGCGGGCAACCGTCACGCTGCTGAGCAATTGTGGGGCATTACTGGGGTGTTTGGTCTGCGGCATGGGGTCAAAGGCTCCAATGTCTGGCAGAATTATACGCACCTGAGCCCGTATTGCCTTGCcca > 2:1915563/1‑150 (MQ=255) gCATGCGCCTGCCGTGC‑CGGCAGGCGGGCAACCGTCACGCTGCTGAGCAATTGTGGGGCATTACTGGGGTGTTTGGTCTGCGGCATGGGGTCAAAGGCTCCAATGTCTGGCAGAATTATACGCACCTGAGCCCGTATTGCCTTGCccatc < 2:333467/150‑1 (MQ=255) cATGCGCCTGCCGTGC‑CGGCAGGCGGGCAACCGTCACGCTGCTGAGCAATTGTGGGGCATTACTGGGGTGTTTGGTCTGCGGCATGGGGTCAAAGGCTCCAATGTCTGGCAGAATTATACGCACCTGAGCCCGTATTGCCTTGCccatcc > 2:1820475/1‑150 (MQ=255) aTGCGCCTGCCGTGC‑CGGCAGGCGGGCAACCGTCACGCTGCTGAGCAATTGTGGGGCATTACTGGGGTGTTTGGTCTGCGGCATGGGGTCAAAGGCTCCAATGTCTGGCAGAATTATACGCACCTGAGCCCGTATTGCCTTGCccatcca > 2:1779055/1‑150 (MQ=255) tGCGCCTGCCGTGC‑CGGCAGGCGGGCAACCGTCACGCTGCTGAGCAATTGTGGGGCATTACTGGGGTGTTTGGTCTGCGGCATGGGGTCAAAGGCTCCAATGTCTGGCAGAATTATACGCACCTGAGCCCGTATTGCCTTGCccatccat < 1:860364/150‑1 (MQ=255) ccgcCTGCCG‑GCACGGCAGGCGGGCAACCGTCACGCTGCTGAGCAATTGTGGGGCATTACTGGGGTGTTTGGTCTGc < 1:336103/76‑1 (MQ=38) ccgcCTGCCG‑GCACGGCAGGCGGGCAACCGTCACGCTGCTGAGCAATTGTGGGGCATTACTGGGGTGTTTGGTCTGc > 2:336103/2‑77 (MQ=38) ccgcCTGCCG‑GCACGGCAGGCGGGCAACCGTCACGCTGCTGAGCAATTGTGGGGCATTACTGGGGTGTTTGGTCTGCGGCATGGGGTCAAAGGCTCCAATGTCTGGCAGAATTATACGCACCTGAGCCCGTATTGCCTTGCCCATCCATg > 2:1413690/2‑150 (MQ=255) gcCTGCCGTGC‑CGGCAGGCGGGCAACCGTCACGCTGCTGAGCAATTGTGGGGCATTAAACGGATGTTTGGTCGCCAGCATTGGGTCAAAGGCTCCAATGTCTGGCAGAATTATACGCACCTGAGCCCGTATTGCCTTGCCCATCCATGTc > 1:232141/1‑150 (MQ=255) ccTGCCGTGC‑CGGCAGGCGGGCAACCGTCACGCTGCTGAGCAATTGTGGGGCATTACTGGGGTGTTTGGTCTGCGGCATGGGGTCAAAGGCTc > 1:1185925/1‑93 (MQ=255) ccTGCCGTGC‑CGGCAGGCGGGCAACCGTCACGCTGCTGAGCAATTGTGGGGCATTACTGGGGTGTTTGGTCTGCGGCATGGGGTCAAAGGCTc < 2:1185925/93‑1 (MQ=255) gccgtgc‑cgGCAGGCGGGCAACCGTCACGCTGCTGAGCAATTGTGGGGCATTACTGGGGTGTTTGGTCTGCGGCATGGGGTCAAAGGCTCCAATGTCTGGCAGAATTATACGCACCTGAGCCCGTATTGCCTTGCCCATCCATGTcc < 2:1274260/147‑1 (MQ=255) gccgtgc‑cgGCAGGCGGGCAACCGTCACGCTGCTGAGCAATTGTGGGGCATTACTGGGGTGTTTGGTCTGCGGCATGGGGTCAAAGGCTCCAATGTCTGGCAGAATTATACGCACCTGAGCCCGTATTGCCTTGCCCATCCATGTcc > 1:1274260/1‑147 (MQ=255) cgtgc‑cgGCAGGCGGGCAACCGTCACGCTGCTGAGCAATtgtg < 1:1202580/43‑1 (MQ=255) cgtgc‑cgGCAGGCGGGCAACCGTCACGCTGCTGAGCAATtgtg > 2:1202580/1‑43 (MQ=255) | GTGCTCGGGCCGGGTTGCCACGCTGACCAGCCCGGCGCCGCAACGCAGGGCGGCTTCGGCACTGAGCAACACAGCGCCTCCGGTACCCAGGTCGCCCCCGACCACCAGTACATGGCCAAAGTCGCCTTTGTGGGCATGCGCCTGCCGTGC‑CGGCAGGCGGGCAACCGTCACGCTGCTGAGCAATTGTGGGGCATTACTGGGGTGTTTGGTCTGCGGCATGGGGTCAAAGGCTCCAATGTCTGGCAGAATTATACGCACCTGAGCCCGTATTGCCTTGCCCATCCATGTCC > NC_002947/5570081‑5570370 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |