| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,541,345:1 | +T | 6.6% | coding (415/807 nt) | PP_3128 → | exopolysaccharide biosynthesis/transport protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,541,345 | 1 | . | T | 6.6% | 293.3 / 13.7 | 76 | coding (415/807 nt) | PP_3128 | exopolysaccharide biosynthesis/transport protein |
| Reads supporting (aligned to +/- strand): ref base . (31/40); new base T (3/2); total (34/42) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.51e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.13e-01 | |||||||||||
CTTGGCCATCACCTCGCCAACGCCGGAAGCGGGCAAGACCATGCTGGCGATCAACCTGGCCATGAGTATTGCCCACCACACCACCAAGACTGCGTTACTGGTGGACTTCGACCTGCGCCGGCCCAAGGTCGGCAGTTACCTGGGCCTGC‑CCATGGAGCAGGCACTGAACGAGTTTCTGACGGACAAGGCCGAGTTGCAGGACTG‑CCTGGTCAACCCCACCTTGCCGCGCTTCGTGGTGCTGCCAACGCGGGTACCCGTGCCCCTGTCGACCGAGATGCTGTCCTCGCCCAAGGTGAAC > NC_002947/3541197‑3541494 | cTTGGCCATCACCTCGCCAACGCCGGAAGCGGGCAAGACCATGCTGGCGATCAACCTGGCCATGAGTATTGCCCACCACACCACCAAGACTGCGTTACTGGTGGACTTCGACCTGCGCCGGCCCAAGGTCGGCAGTTACCTGGGCCTGc‑c > 1:499232/1‑150 (MQ=255)cTTGGCCATCACCTCGCCAACGCCGGAAGCGGGCAAGACCATGCTGGCGATCAACCTGGCCATGAGTATTGCCCACCACACCACCAAGACTGCGTTACTGGTGGACTTCGACCTGCGCCGGCCCAAGGTCGGCAGTTACCTGGGCCTGc‑c > 1:1030836/1‑150 (MQ=255) ccATCACCTCGCCAACGCCGGAAGGCGGCAAGACCATGCTGCCGAGCAACCGGGCCATGAGTAGTGCCCACCGCACCACCAAGACTACGTTACTGGTGGCCTTCGACCTGCGCCGGCCCAAGGTCGGCAGTTACCTGGGCCTGC‑CCATgg < 2:1057344/150‑1 (MQ=255) ccTNGCCAACGCCGGAAGCGGGCAAGACCATGCTGGCGATCAACCTGGCCATGAGTATTGCCCACCACACCACCAAGACTGCGTTACTGGTGGACTTCGACCTGCGCCGGCCCAAGGTCGGCAGTTACCTGGGCCTGC‑CCATGGAGCAgg > 2:1187152/1‑150 (MQ=255) ccAACGCCGGAAGCGGGCAAGACCGTGCTGGCGATCAACCTGGCCATGAGTATTGCCCACCACACCACCAAGACTGCGTTACTGGTGGACTTCGACCTGCGCCGGCCCAAGGTCGGCAGTTACCTGGGCCTGC‑CCATGGAGCAGGCACTg > 1:1221625/1‑150 (MQ=255) aCGCCGGAAGCGGGCAAGACCATGCTGGCGATCAACCTGGCCATGAGTATTGCCCACCACACCACCAAGACTGCGTTACTGGTGGACTTCGACCTGCGCCGGCCCAAGGTCGGCAGTTACCTGGGCCTGC‑CCATGGAGCAGGCACTGAAc < 2:101471/150‑1 (MQ=255) ccGGAAGCGGGCAAGACCATGCTGGCGATCAACCTGGCCATGAGTATTGCCCACCACACCACCAAGACTGCGTTACTGGTGGACTTCGACCTGCGCCGGCCCAAGGTCGGCAGTTACCTGGGCCTGC‑CCATGGAGCAGGCACTGAACGAg < 1:1162682/150‑1 (MQ=255) cGGAAGCGGGCAAGACCATGCTGGCGATCAACCTGGCCATGAGTATTGCCCACCACACCACCAAGACTGCGTTACTGGTGGACTTCGACCTGCGCCGGCCCAAGGTCGGCAGTTACCTGGGCCTGC‑CCATGGAGCAGGCACTGAACGAGt < 2:245149/150‑1 (MQ=255) cGGAAGCGGGCAAGACCATGCTGGAGATCAACCTGGCCATGAGTATTGCCCACCACACCACCAAGACTGCGTTACTGGTGGACTTCGACCTGCGCCGGCCCAAGGTCGGCAGTTACCTGGGCCTGC‑CCATGGAGCAGGCACTGAACGAGt > 1:257540/1‑150 (MQ=255) gAAGCGGGCAAGACCATGCTGGCGATCAACCTGGCCATGAGTATTGCCCACCACACCACCAAGACTGCGTTACTGGTGGACTTCGACCTGCGCCGGCCCAAGGTCGGCAGTTACCTGGGCCTGC‑CCATGGAGCAGGCACTGAACGAGttt < 2:1817658/150‑1 (MQ=255) cGGGCAAGACCATGCTGGCGATCAACCTGGCCATGAGTATTGCCCACCACACCACCAAGACTGCGTTACTGGTGGACTTCGACCTGCGCCGGCCCAAGGTCGGCAGTTACCTGGGCCTGC‑CCATGGAGCAGGCACTGAACGAGTTTCTGa < 1:1313621/150‑1 (MQ=255) ggCAAGACCATGCTGGCGATCAACCTGGCCATGAGTATTGCCCACCACACCACCAAGACTGCGTTACTGGTGGACTTCGACCTGCGCCGGCCCAAGGTCGGCAGGTACCTGGGCCTGC‑CCATGGAGCAGGCACTGAACGAGTTTCTGACg > 1:71848/1‑150 (MQ=255) gttgACCATGCTGGCGATCAACCTGGCCATGAGTATTGCCCACCACACCACCAAGACTGCGTTACTGGTGGACTTCGACCTGCGCCGGCCCAAGGTCGGCAGTTACCTGGGCCTGC‑CCATGGAGCAGGCACTGAACGAGTTTCTGACGGa > 2:924798/4‑150 (MQ=255) aGACCATGCTGGCGATCAACCTGGCCCTTATTATTGCCCACCACACCACCAAGACTGCGTTACTGGTGGACTTCGACCTGCGCCGGCCCAAGGTCGGCAGTTACCTGGGCCTGC‑CCATGGAGCAGGCACTGAACGAGTTTCTGACGGACa > 1:347978/1‑150 (MQ=255) aCCATGCTGGCGATCAACCTGGCCATGAGTATTGCCCACCACACCACCAAGACTGCGTTACTGGTGGACTTCGACCTGCGCCGGCCCAAGGTCGGCAGTTACCTGGGCCTGC‑CCATGGAGCAGGCACTGAACGAGTTTCTGACGGACAAg > 1:1749788/1‑150 (MQ=255) cATGCTGGCGATCAACCTGGCCATGAGTATTGCCCACCACACCACCAAGACTGCGTTACTGGTGGACTTCGACCTGCGACGGCCCAAGGTCGGCAGTTACCTGGGCCTGC‑CCATGGAGCAGGCACTGAACGAGTTTCTGACGGACAAGGc > 1:511537/1‑150 (MQ=255) gCTGGCGATCAACCTGGCCATGAGTATTGCCCACCACACCACCAAGACTGCGTTACTGGTGGACTTCGACCTGCGCCGGCCCAAGGTCGGCAGTTACCTGGGCCTGC‑CCATGGAGCAGGCACTGAACGAGTTTCTGACGGACAAGGCCGa < 2:499232/150‑1 (MQ=255) aTCAACCTGGCCATGAGTATTGCCCACCACACCACCACGACTGCGTTACTGGTGGACTTCGACCTGCGCCGGCCCAAGGTCGGCAGTTACCTGGGCCTGC‑CCATGGAGCAGGCACTGAACGAGTTTCTGACGGACAAGGCCGAGTTGCAg < 1:1644175/150‑1 (MQ=255) aTCAACCTGGCCATGAGTATTGCACACCACACCACCAAGACTGCGTTACTGGTGGACTTCGACCTGCGCCGGCCCAAGGTCGGCAGTTACCTGGGCCTGC‑CCATGGAGCAGGCACTGAACGAGTTTCTGACGGACAAGGCCGAGTTGCAg < 1:201110/150‑1 (MQ=255) aaCCTGGCCATGAGTATTGCCCACCACACCACCAAGACTGCGTTACTGGTGGACTTCGACCTGCGCCGGCCCAAGGTCGGCAGTTACCTGGGCCTGC‑CCATGGAGCAGGCACTGAACGAGTTTCTGACGGACAAGGCCGAGTTGCAGGAc > 1:930616/1‑150 (MQ=255) aCCTGGCCATGAGTATTGCCCACCACACCACCAAAACTCCGTTACTGGTGGACTTCGACCTGCGCCGGCCCAAGGTCGGCAGTTACCTGGGCCTGC‑CCATGGAGCAGGCACTGAACGAGTTTCTGACGGACAAGGCCGAGTTGCAGGACt < 1:1634632/150‑1 (MQ=255) tGGCCATGAGTATTGCCCACCACACCACCAAGACTGCGTTACTGGTGGACTTCGACCTGCGCCGGCCCAAGGTCGGCAGTTACCTGGGCCTGC‑CCATGGAGCAGGCACTGAACGAGTTTCTGACGGACAAGGCCGAGTTGCa < 2:483530/142‑1 (MQ=255) tGGCCATGAGTATTGCCCACCACACCACCAAGACTGCGTTACTGGTGGACTTCGACCTGCGCCGGCCCAAGGTCGGCAGTTACCTGGGCCTGC‑CCATGGAGCAGGCACTGAACGAGTTTCTGACGGACAAGGCCGAGTTGCa > 1:483530/1‑142 (MQ=255) tGGCCATGAGTATTGCCCACCACACCACCAAGACTGCGTTACTGGTGGACTTCGACCTGCGCCGGCCCAAGGTCGGCAGTTACCTGGGCCTGC‑CCATGGAGCAGGCACTGAACGAGTTTCTGACGGACAAGGCCGAGTTGCAGGACTG‑cc > 1:1356223/1‑150 (MQ=255) ccATGAGTATTGCCCACCACACCACCAAGACTGCGTTACTGGTGGACTTCGACCTGCGCCGGCCCAAGGTCGGCAGTTACCTGGGCCTGC‑CCATGGAGCAGGCACTGAACGAGTTTCTGACGGACAAGGCCGAGTTGCAGGACTG‑CCTgg < 1:1128467/150‑1 (MQ=255) cATGAGTATTGCCCACCACACCACCAAGACTGCGTTACTGGTGGACTTCGACCTGCGCCGGCCCAAGGTCGGCAGTTACCTGGGCCTGCTCCATGG‑GCAGGcccag > 2:809158/1‑102 (MQ=255) cATGAGTATTGCCCACCACACCACCAAGACTGCGTTACTGGTGGACTTCGACCTGCGCCGGCCCAAGGTCGGCAGTTACCTGGGCCTGCTCCATGG‑GCAGGcccag < 1:809158/106‑5 (MQ=255) aTGAGTATTGCCCACCACACCACCAAGACTGCGTTACTGGTGGACTTCGACCTGCGCCGGCCCAAGGTCGGCAGTTACCTGGGCCTGC‑CCATGGAGCAGGCACTGAACGAGTTTCTGACGGACAAGGCCGAGTTGCAGGACTG‑CCTGGTc < 1:678146/150‑1 (MQ=255) aTGAGTATGGCCCACCACACCACCAAGACTGCGTTACTGGTGGACTTCGACCTGCGCCGGCCCAAGGTCGGCAGTTACCTGGGCCTGC‑CCATGGAGCAGGCACTGAACGAGTTTCTGACGGACAAGGCCGAGTTGCAGGACTG‑CCTGGTc > 1:643529/1‑150 (MQ=255) tGAGTATTGCCCACCACACCACCAAGACTGCGTTACTGGTGGACTTCGACCTGCGCCGGCCCAAGGTCGGCAGTTACCTGGGCCTGC‑CCATGGAGCAGGCACTGAACGAGTTTCTGACGGACAAGGCCGAGTTGCAGGACTG‑CCTGGTCa > 1:472228/1‑150 (MQ=255) aGTATTGCCCACCACACCACCAAGACTGCGTTACTGGTGGACTTCGACCTGCGCCGGCCCAAGGTCGGCAGTTACCTGGGCCTGC‑CCATGGAGCAGGCACTGAACGAGTTTCTGACGGACAAGGCCGAGTTGCAGGACTG‑CCTGGTCAAc < 1:924798/150‑1 (MQ=255) aGTATTGCCCACCACACCACCAAGACTGCGTTACTGGTGGACTTCGACCTGCGCCGGCCCAAGGTCGGCAGTTACCTGGGCCTGC‑CCATGGAGCAGGCACAGGACGTGTTTCTGACGGACAAGGCCGAGTTGCAGGACTG‑CCTGGTCAAc < 1:330986/150‑1 (MQ=255) ttGCCCACCACACCACCAAGACTGCGTTACTGGTGGACTTCGACCTGCGCCGGCCCAAGGTCGGCAGTTACCTGGGCCTGC‑CCATGGAGCAGGCACTGAACGAGTTTCTGACGGACAAGGCCGAGTTGCAGGACTG‑CCTGGTCAACCCCa > 1:1615109/1‑150 (MQ=255) ccaccaCACCACCAAGACTGCGTTACTGGTGGACTTCGACCTGCGCCGGCCCAAGGTCGGCAGTTACCTGGGCCTGC‑CCATGGAGCAGGCACTGAACGAGTTTCTGACGGCCAAGGCCGAGTTGCAGGACTG‑CCGTTTCAACCCCACCtt < 2:1221625/150‑1 (MQ=255) caccacaccaCCAAGACTGCGTTACTGGTGGACTTCGACCTGCGCCGGCCCAAGGTCGGCAGTTACCTGGGCCTGC‑CCATGGAGCAGGCACTGAACGAGTTTCTGACGGACAAGGCCGAGTTGc < 2:1332784/124‑1 (MQ=255) caccacaccaCCAAGACTGCGTTACTGGTGGACTTCGACCTGCGCCGGCCCAAGGTCGGCAGTTACCTGGGCCTGC‑CCATGGAGCAGGCACTGAACGAGTTTCTGACGGACAAGGCCGAGTTGc > 1:1332784/1‑124 (MQ=255) accacaccacCAAGACTGCGTTACTGGTGGACTTCGACCTGCGCCGGCCCAAGGTCGGCAGTTACCTGGGCCTGC‑CCATGGAGCAGGCACTGAACGAGTTTCTGACGGACAAGGCCGAGTTGCAGGACTG‑CCTGGTCAACCCCACCTTGc < 1:1129101/150‑1 (MQ=255) ccacaccacCAAGACTGCGTTACTGGTGGACTTCGACCTGCGCCGGCCCAAGGTCGGCAGTTACCTGGGCCTGC‑CCATGGAGCAGGCACTGAACGAGTTTCTGACGGACAAGGCCGAGTTGCAg < 2:1626607/124‑1 (MQ=255) ccacaccacCAAGACTGCGTTACTGGTGGACTTCGACCTGCGCCGGCCCAAGGTCGGCAGTTACCTGGGCCTGC‑CCATGGAGCAGGCACTGAACGAGTTTCTGACGGACAAGGCCGAGTTGCAg > 1:1626607/1‑124 (MQ=255) cacaccacCAAGACTGCGTTACTGGTGGACTTCGACCTGCGCCGGCCCAAGGTCGGCAGTTACCTGGGCCTGC‑CCATGGGGCAGGCACTGAACGAGTTTCTGACGGACAAGGCCGAGTTGCAGGACTG‑CCTgg < 1:135612/133‑1 (MQ=255) cacaccacCAAGACTGCGTTACTGGTGGACTTCGACCTGCGCCGGCCCAAGGTCGGCAGTTACCTGGGCCTGC‑CCATGGAGCAGGCACTGAACGAGTTTCTGACGGACAAGGCCGAGTTGCAGGACTG‑CCTgg > 2:135612/1‑133 (MQ=255) accaAGACTGCGTTACTGGTGGACTTCGACCTGCGCCGGCCCAAGGTCGGCAGTTACCTGGGCCTGC‑CCATGGAGCAGGCACTGAACGAGTTTCTGACGGACAAGGCCGAGTTGCAGGACTG‑CCCGGTCACCCCCACCTTGCCGCGCTTc > 2:239682/1‑150 (MQ=255) caAGACTGCGTTACTGGTGGACTTCGACCTGCGCCGGCCCAAGGTCGGCAGTTACCTGGGCCTGC‑CCATGGAGCAGGCACTGAACGAGTTTCTGACGGACAAGGCCGAGTTGCAGGACTG‑CCTGGTCAACCCCACCTTGCCGCGCTTCgt < 1:805463/150‑1 (MQ=255) gACTGCGTTACTGGTGGACTTCGACCTGCGCCGGCCCAAGGTCGGCAGTTACCTGGGCCTGC‑CCATGGAGCAGGCACTGAACGAGTTTCTGACGGACAAGGCCGAGTTGCAGGACTG‑CCTGGTCAAcc > 2:1374558/1‑128 (MQ=255) gACTGCGTTACTGGTGGACTTCGACCTGCGCCGGCCCAAGGTCGGCAGTTACCTGGGCCTGC‑CCATGGAGCAGGCACTGAACGAGTTTCTGACGGACAAGGCCGAGTTGCAGGACTG‑CCTGGTCAAcc < 1:1374558/128‑1 (MQ=255) cGTTACTGGTGGACTTCGACCTGCGCCGGCCCAAGGTCGGCAGTTACCTGGGCCTGC‑CCATGGAGCAGGCACTGAACGAGTTTCTGACGGACAAGGCCGAGTTGCAGGACTG‑CCTGGTCAACCCCACCTTGCCGCGCTTCGTGGtgctgc < 2:789547/150‑1 (MQ=255) cGTTACTGGTGGACTTCGACCTGCGCCGGCCCAAGGTCGGCAGTTACCTGGGCCTGC‑CCATGGAGCAGGCACTGAACGAGTTTCTGACGGACAAGGCCGAGTTGCAGGACTG‑CCTGGTCAACCCCACCTTGCCGCGCTTCGTGGtgctgc < 1:1187152/150‑1 (MQ=255) gTTACTGGTGGACTTCGACCTGCGCCGGCCCAAGGTCGGCAGTTACCTGGGCCTGC‑CCATGGAGCAGGCACTGAACGAGTTTCTGACGGACAAGGCCGAGTTGCAGGACTG‑CCTGGTCAACCCCACCTTGCCGCGCTTCgtggt < 1:87497/144‑1 (MQ=255) gTTACTGGTGGACTTCGACCTGCGCCGGCCCAAGGTCGGCAGTTACCTGGGCCTGC‑CCATGGAGCAGGCACTGAACGAGTTTCTGACGGACAAGGCCGAGTTGCAGGACTG‑CCTGGTCAACCCCACCTTGCCGCGCTTCgtggt > 2:87497/1‑144 (MQ=255) atggtggACTTCGACCAGCGCCGGCCCAAGGTCGGCAGTTACCTGGGCCTGC‑CCATGGAGCAGGCACTGAACGAGTTTCTGACGGACAAGGCCGAGTTGCAGGACTG‑CCTGGTCAACCCCACCTTGCCGCGCTTCGTGGTGCTGCCAAcg > 2:1368173/2‑150 (MQ=255) gtggACTTCGACCTGCGCCGGCCCAAGGTCGGCAGTTACCTGGGCCTGC‑CCATGGAGCAGGCACTGAACGAGTTTCTGACGGACAAGGCCGAGTTGCAGGACTG‑CCTGGTCAACCCCACCTTGCCGCGCTTCGTGGTGCTGCCAACGCgg < 2:347978/150‑1 (MQ=255) gtggACTTCGACCTGCGCCGGCCCAAGGTCGGCAGTTACCTGGGCCTGC‑CCATGGAGCAGGCACTGAACGAGTTTCTGACGGACAAGGCCGAGTTGCAGGACTG‑CCTGGTCAACCCCACCTTGCCGCGCTTCGTGGTGCTGCCAACGCgg < 2:472228/150‑1 (MQ=255) gtggACTTCGACCTGCGCCGGCCCAAGGTCGGCAGTTACCTGGGCCTGC‑CCATGGAGCAGGCACTGAACGAGTTTCTGACGGACAAGGCCGAGTTGCAGGACTG‑CCTGGTCAACCCCACCTTGCCGCGCTTCGTGGTGCTGCCAACGCgg < 2:1442907/150‑1 (MQ=255) ttCGACCTGCGCCGGCCCAAGGTCGGCAGTTACCTGGGCCTGC‑CCATGGAGCAGGCACTGAACGAGTTTCTGACGGACAAGGc < 2:1223797/83‑1 (MQ=255) ttCGACCTGCGCCGGCCCAAGGTCGGCAGTTACCTGGGCCTGC‑CCATGGAGCAGGCACTGAACGAGTTTCTGACGGACAAGGc > 1:1223797/1‑83 (MQ=255) ttCGACCTGCGCCGGCCCAAGGTCGGCAGTTACCTGGGCCTGC‑CCATGGAGCAGGCACTGAACGAGTTTCTGACGGACAAGGCCGAGTTGCAGGACTG‑CCTGGTCAACCCCACCTTGCCGCGCTTCgtg > 1:44607/1‑129 (MQ=255) ttCGACCTGCGCCGGCCCAAGGTCGGCAGTTACCTGGGCCTGC‑CCATGGAGCAGGCACTGAACGAGTTTCTGACGGACAAGGCCGAGTTGCAGGACTG‑CCTGGTCAACCCCACCTTGCCGCGCTTCgtg < 2:44607/129‑1 (MQ=255) ttCGACCTGCGCCGGCCCAAGGTCGGCAGTTACCTGGGCCTGC‑CCATGGAGCAGGCACTGAACGAGTTTCTGACGGACAAGGCCGAGTTGCAGGACTG‑CCTGGTCAACCCCACCTTGCCGCGCTTCGTGGTGCTGCCAACGCGGGTAccc > 2:1714647/1‑150 (MQ=255) cccTGCGCCGGCCCAAGGTCGGCAGTTACCTGGGCCTGC‑CCATGGAGCAGGCACTGAACGAGTTTCTGACGGACAAGGCCGAGTTGCAGGACTGAAGGGGTGATCCCCA‑TTGGTTGGGCGGCGTGTTGCTGCCAACGCGGGTACCCGTGc < 1:239682/149‑1 (MQ=255) ggCCCAAGGTCGGCAGTTACCTGGGCCTGC‑CCATGGAGCAGGCACTGAACGAGTTTCTGACGGACAAGGCCGAGTTGCAGGACTG‑CCTGGTCAACCCCACCTTGCCGCGCTTCGTGGTGCTGCCAACGCGGGTACCCGTGCCCCTGTCGa < 2:511537/150‑1 (MQ=255) gCCCAAGGTCGGCAGTTACCTGGGCCTGC‑CCATGGAGCAGGCACTGAACGAGTTTCTGACGGACAAGGCCGAGTTGCAGGACTG‑CCTGGTCAACCCCACCTTGCCGCGCTTCGTGGTGCTGCCAACGCGGGTACCCGTGCCCCTGTCGAc < 2:1749788/150‑1 (MQ=255) gCCCAAGGTCGGCAGTTACCTGGGCCTGC‑CCATGGAGCAGGCACTGAACGAGTTTCTGACGGACAAGGCCGAGTTGCAGGACTG‑CCTGGTCAACCCCACCTTGCCGCGCTTCGTGGTGCCAATATCGCGGGTACCCGTGCCCCTGTCGAc < 1:347572/150‑1 (MQ=255) ccAAGGTCGGCAGTTACCTGGGCCTGC‑CCATGGAGCAGGCACTGAACGAGTTTCTGACGGACAAGGCCGAGTTGCAGGACTG‑CCTGGTCAAcccc < 1:31811/95‑1 (MQ=255) ccAAGGTCGGCAGTTACCTGGGCCTGC‑CCATGGAGCAGGCACTGAACGAGTTTCTGACGGACAAGGCCGAGTTGCAGGACTG‑CCTGGTCAAcccc > 2:31811/1‑95 (MQ=255) ccAAGGTCGGCAGTTACCTGGGCCTGC‑CCATGGAGCAGGCACTGAACGAGTTTCTGACGGACAAGGCCGAGTTGCAGGACTG‑CCTGGTCAACCCCACCTTGCCGCGCTTCGTGGTGCTGCCAACGCGGGTACCCGTGCCCCTGTCGACCg > 1:457808/1‑150 (MQ=255) ccAAGGTCGGCAGTTACCTGGGCCTGC‑CCATGGAGCAGGCACTGAACGAGTTTCTGACGGACAAGGCCGAGTTGCAGGACTG‑CCTGGTCAACCCCACCTTGCCGCGCTTCGTGGTGCTGCCAACGCGGGTACCCGTGCCCCTGTCGACCg > 1:1272283/1‑150 (MQ=255) ccAAGGTCGGCAGTTACCTGGGCCTGC‑CAATGGAGCAGGCACTGAACGAGTTTCTGACGGACGAGGCCGAGTTGCAGGACTG‑CCTGGTCAACCCCACCTTGCCGCGCTTCGTGGTGCTGCCAACGCGGATACCCGTGCCCCTGTCGACCg > 2:618205/1‑150 (MQ=255) cGGCAGTTACCTGGGCCTGC‑CCATGGAGCAGGCACTGAACGAGTTTCTGACGGACAAGGCCGAGTTGCAGGACTG‑CCTGGTCAACCCCACCTTGCCGCGCTTCGTGGTGCTGCCAACGCGGGTACCCGTGCCCCTGTCGACCGAGATGCt > 2:1767606/1‑150 (MQ=255) gCAGTTACCTGGGCCTGC‑CCATGGAGCAGGCACTGAACGAGTTTCTGACGGACAAGGCCGAGTTGCAGGACTG‑CCTGGTCAACCCCACCTTGCCGCGCTTCTCTGTGCTGCCAACGCGGGTACCCGTGCCCCTGTCGACCGAGATGCTGt > 2:1485084/1‑150 (MQ=255) aGTTACCTGGGCCTGC‑CCATGGAGCAGGCACTGAACGAGTTTCTGACGGACAAGGCCGAGTTGCAGGACTG‑CCTGGTCAACCCCACCTTGCCGCGCTTCGTGGTGCTGCCAACGCGGGTACCCGTGCCCCTGTCGACCGAGATGCTGTcc < 1:1431438/150‑1 (MQ=255) gTTACCTGGGCCTGC‑CCATGGAGCAGGCACTGAACGAGTTTCTGACGGACAAGGCCGAGTTGCAGGACTG‑CCTGGTCAACCCCACCTTGCCGCGCTTCGTGGTGCTGCCAACGCGGGTACCCGTGCCCCTGTCGACCGAGATGCTGTCCt < 2:930616/150‑1 (MQ=255) ttACCTGGGCCTGC‑CCATGGAGCAGGCACTGAACGAGTTTCTGACGGACAAGGCCGAGTTGCAGGACTG‑CCTGGTCAACCCCACCTTGCCGCGCTTCGTGGTGCTGCCAACGCGGGTACCCGTGCCCCTGTCGACCGAGATGCTGTCCTc < 2:1615109/150‑1 (MQ=255) cagtgCCTGCTCCATGG‑GCAGGCACTGAACGAGTTTCTGACGGACAAGGCCGAGTTGCAGGACTG‑CCTGGTCAACCCCACCTTGCCGCGCTTCGTGGTGCTGCCAACGCGGGTACCCGTGCCCCTGTCGACCGAGATGCTGTCCTCGccc > 1:1262285/5‑150 (MQ=255) agtgCCTGCTCCATGG‑GCAGGCCCTGAACGAGTTTCTGACGGACAAGGCCGAGTTGCAGGACTG‑CCTGGTCAACCCCACCTTGCCGCGCTTCGTGGtgctgc < 1:1868943/99‑1 (MQ=255) agtgCCTGCTCCATGG‑GCAGGCCCTGAACGAGTTTCTGACGGACAAGGCCGAGTTGCAGGACTG‑CCTGGTCAACCCCACCTTGCCGCGCTTCGTGGtgctgc > 2:1868943/4‑102 (MQ=255) gggCCTGC‑CCATGGAGCAGGCACTGAACGAGTTTCTGACGGACAAGGCCGAGTTGCAGGACTG‑CCTGGTCAACCCCACCTTGCCGCGCTTCGTGGTGCTGCCAACGCGGGTACCCGTGCCCCTGTCGACCGAGATGCTGTCCTCGCCCaa > 1:1661651/1‑150 (MQ=255) gggCCTGC‑CCATGGAGCAGGCACTGAACGAGTTTCTGACGGACAAGGCCGAGTTGCAGGACTG‑CCTGGTCAACCCCACCTTGCCGCGCTTCGTGGTGCTGCCAACGCGGGTACCCGTGCCCCTGTCGACCGAGATGCTGTCCTCGCCCaa < 2:1272283/150‑1 (MQ=255) ggCCTGC‑CCATGGAGCAGGCACTGAACGAGTTTCTGACGGACAAGGCCGAGTTGCAGGACTG‑CCTGGTCAACCCCACCTTGCCGCGCTTCGTGGTGCTGCCAACGCGGGTACCCGTGCCCCTGTCGACCGAGATGCTGTCCTCGCCCAAg < 2:257540/150‑1 (MQ=255) c‑ccATGGAGCAGGCACTGAACGAGTTTCTGACGGACAAGGCCGAGTTGCAGGACTG‑CATGGGCAACCCCACCTTGCCGCGCTTCGTGGTGCTGCCAACGCGGGTACCCGTGCCCCTGTCGACCGAGATGCTGTCCTCGCCCAAGGTGaac > 2:1699710/1‑150 (MQ=255) | CTTGGCCATCACCTCGCCAACGCCGGAAGCGGGCAAGACCATGCTGGCGATCAACCTGGCCATGAGTATTGCCCACCACACCACCAAGACTGCGTTACTGGTGGACTTCGACCTGCGCCGGCCCAAGGTCGGCAGTTACCTGGGCCTGC‑CCATGGAGCAGGCACTGAACGAGTTTCTGACGGACAAGGCCGAGTTGCAGGACTG‑CCTGGTCAACCCCACCTTGCCGCGCTTCGTGGTGCTGCCAACGCGGGTACCCGTGCCCCTGTCGACCGAGATGCTGTCCTCGCCCAAGGTGAAC > NC_002947/3541197‑3541494 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |