New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	85049 =	68 (0.910)	11 (0.170)	9/220	NT	13.9%	intergenic (+27/+103)	aroE/PP_0075	shikimate 5‑dehydrogenase/choline sulfate transporter
	?	NC_002947	85122 =	77 (1.190)					intergenic (+100/+30)	aroE/PP_0075	shikimate 5‑dehydrogenase/choline sulfate transporter

GATCGAGGAGTTGCAGAAGCTGGAAGGGGTGGAGTTGTGCCCGATCCGGTTTGAGGAATGAGGTTGGGATTCTGGGTCTGCTTTGCAGCCC‑ATCGCGACGCAAGGCCGCTCCCACAGAGGATCGGCGTACGACG‑TACTTTGTGGGAACGGCCTTGCGTCGCGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/85212‑85049 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggccttgcgtcgcgat‑GGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTTCCAGCTTCTGCAACTCCTCGATCACCTGCGGCCTGGCCCGGTGCAAGGTCAAACTCCCCCCCAATCGCCGCAACCGCCGCG  >  NC_002947/85122‑85270                                                                                                                                                                                                                                                                                                                              GATCGAGGAGTTGCAGAAGCTGGAAGGGGTGGAGTTGTGCCCGATCCGGTTTGAGGAATGAGGTTGGGATTCTGGGTCTGCTTTGCAGCCC‑ATCGCGACGCAAGGCCGCTCCCACAGAGGATCGGCGTACGACG‑TACTTTGTGGGAACGG                                                                                                                                                                      >  2:1386489/1‑150   TCGAGGAGTTGCAGAAGCTGGAAGGGGTGGAGTTGTGCCCGATCCGGTTTGAGGAATGAGGTTGGGATTCTGGGTCTGCTTTGCAGCCC‑ATCGCGACGCAAGGCCGCTCCCACAGAGGATCGGCGTACGACG‑TACTTTGTGGGAACGGCC                                                                                                                                                                    >  2:1629813/1‑150              CAGAAGCTGGAAGGGGTGGAGTTGTGCCCGATCCGGTTTGAGGAATGCGGTTGGGTTTCTGGGTCTGCTTTGCAGCCC‑ATCGCGACGCAAGGCCGCTCCCACAGAGGATCGGCGTACGACG‑TACTTTGTGGGAACGGCCTTGCGTCGCGA                                                                                                                                                         <  2:1485348/150‑1              CAGAAGCTGGAAGGGGTGGAGTTGTGCCCGATCCGGTTTGAGGAATGAGGTTGGGATTCTGGGTCTGCTTTGCAGCCC‑ATCGCGACGCAAGGCCGCTCCCACAGAGGATCGGCGTACGACG‑TACTTTGTGGGAACGGCCTTGCGTCGCGA                                                                                                                                                         <  2:807654/150‑1                      GGAAGGGGTGGAGTTGTGCCCGATCCGGTTTGAGGAATGAGGTTGGGATTCTGGGTCTGCTTTGCAGCCCTATCGCGACGCAAGGCCGTTCCCACAAAGTA‑CGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGAT‑GGGCTG                                                                                                                                                 >  2:1241504/1‑150                       GAAGGGGTGGAGTTGTGCCCGATCCGGTTTGAGGAATGAGGTTGGGATTCTGGGTCTGCTTTGCAGCCC‑ATCGCGACGCAAGGCCGCTCCCACAGAGGATCGGCGTACGACG‑TACTTTGTGGGAACGGCCTTGC                                                                                                                                                                <  1:1063669/134‑1                       GAAGGGGTGGAGTTGTGCCCGATCCGGTTTGAGGAATGAGGTTGGGATTCTGGGTCTGCTTTGCAGCCC‑ATCGCGACGCAAGGCCGCTCCCACAGAGGATCGGCGTACGACG‑TACTTTGTGGGAACGGCCTTGC                                                                                                                                                                >  2:1063669/1‑134                                        CCCGATCCGGTTTGAGGAATGAGGTTGGGATTCTGGGTCTGCTTTGCAGCCC‑ATCGCGACGCAAGGCCGCTCCCACAGAGGATCGGCGTACGACG‑TACTTTGTGGGAACGGCCTTGCGTCGCGA                                                                                                                                                         >  2:792536/1‑124                                        CCCGATCCGGTTTGAGGAATGAGGTTGGGATTCTGGGTCTGCTTTGCAGCCC‑ATCGCGACGCAAGGCCGCTCCCACAGAGGATCGGCGTACGACG‑TACTTTGTGGGAACGGCCTTGCGTCGCGA                                                                                                                                                         <  1:792536/124‑1                                                GGTTTGAGGAATGAGGTTGGGATTCTGGGTCTGCTTTGCAGCCC‑ATCGCGACGCAAGGCCGCTCCCACAGAGGATCGGCGTACGACG‑TACTTTGTGGGAACG                                                                                                                                                                       <  1:465458/102‑1                                                GGTTTGAGGAATGAGGTTGGGATTCTGGGTCTGCTTTGCAGCCC‑ATCGCGACGCAAGGCCGCTCCCACAGAGGATCGGCGTACGACG‑TACTTTGTGGGAACG                                                                                                                                                                       >  2:465458/1‑102                                                                             TCTGCTTTGCAGCCC‑ATCGCGACGCAAGGCCGCTCCCACAGAGGATCGGCGTACGACG‑TACTTTGTGGGAACGGCCTTGCGTCGCGATAGGGCTGCAAAGCAGACCCAGAATCCCAACCTCATGCCTCAAACCGGATCGGGCACAACTCC                                                                                          >  1:1241504/1‑150                                                                                 CTTTGCAGCCC‑ATCGCGACGCAAGGCCGCTCCCACAGAGGATCGGCGTACGACG‑TACTTTGTGGGAACGGCCTTGCGTCGCGATAGGGCCGCCAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCC                                                                                      >  1:948187/1‑150                                                                                                       AAGGCCGCTCCCACAGAGGATCGGCGTACGACG‑TACTTTGTGGGAACGGCCTTGCGTCGCGAT‑GGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTTCCAGCTTCTGCAACTCCTC                                                                >  1:868086/1‑150                                                                                                            CGCTACCACAGAGGATCGGCGTACGACG‑TACTTTGTGGGAACGGCCTTGCGTCGCGATAGGGCCGCCAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTCCCAGCTTCTGCAACTCCTCGATC                                                            <  2:948187/150‑1                                                                                                                  CACAGAGGATCGGCGTACGACG‑TACTTTGTGGGAACGGCCTTGCGTCGCGAT‑GGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTTCCAGCTTCT                                                                          >  2:144726/1‑129                                                                                                                  CACAGAGGATCGGCGTACGACG‑TACTTTGTGGGAACGGCCTTGCGTCGCGAT‑GGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTTCCAGCTTCT                                                                          <  1:144726/129‑1                                                                                                                  CACAGAGGATCGGCGTACGACG‑TACTTTGTGGGAACGGCCTTGCGTCGCGAT‑GGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTC                                                                                                                   <  2:1762165/88‑1                                                                                                                  CACAGAGGATCGGCGTACGACG‑TACTTTGTGGGAACGGCCTTGCGTCGCGAT‑GGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTC                                                                                                                   >  1:1762165/1‑88                                                                                                                  CACAGAGGATCGGCGTACGACG‑AACTTTGTGGGAACGGCCTTGCGTCGCGAT‑GGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTTCCAGCTTCTGCAACTCCTCGATCACCTGCG                                                     >  2:644718/1‑150                                                                                                                              GCGTACGACG‑TACTTTGTGGGAACGGCCTTGCGTCGCGAT‑GGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTTCCAGCTTCTGCAACTCCTCGATCACCTGCGGCCTGGCCCGGT                                         <  2:868086/150‑1                                                                                                                                                          CTTGCGTCGCGAT‑GGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTTCCAGCTTCTGCAACTCCTCGATCACCTGCGGCCTGGCCCGGTGCAAGGTCAAACTCCCCCCCAATCGCC              <  2:1544938/150‑1                                                                                                                                                           TTGCGTCGCGAT‑GGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTTCCAGCTTCTGCAACTCCTCGATCACCTGCGGCCTGGCCCGGTGCAAGGTCAAACTCCCCCCCAATCGCCG             >  2:1021952/1‑150                                                                                                                                                           TTGCGTCGCGAT‑GGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTTCCAGCTTCTGCAACTCCTCGATCACCTGCGGCCTGGCCCGGTGCAAGGTCAAACTCCCCCCCAATCGCCG             <  2:67021/150‑1                                                                                                                                                               GTCGCGAT‑GGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCCCCCCTTCCAGCTTATGCAACTCCTCGATCACCTGCGGCCTGGCCCGGTGCAAGGTCAAACTCCCCCCCAATCGCCcccac         >  1:827717/1‑145                                                                                                                                                                  GCGAT‑GGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTTCCAGCTTCTGCAACTCCTCGATCACCTGCGGCCTGGCCCGGTGCAAGGTCAAACTCCCCCCCAATCGCCGCAACCGC      <  1:807654/150‑1                                                                                                                                                                      T‑GGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTTCCAGCTTCTGCAACTCCTCGATCACCTGCGGCCTGGCCCGGTGCAAGGTCAAACTCCCCCCCAATCGCCGCAACCGCCGCG  >  1:832083/1‑150                                                                                                                                                                                                                                                                                                                              GATCGAGGAGTTGCAGAAGCTGGAAGGGGTGGAGTTGTGCCCGATCCGGTTTGAGGAATGAGGTTGGGATTCTGGGTCTGCTTTGCAGCCC‑ATCGCGACGCAAGGCCGCTCCCACAGAGGATCGGCGTACGACG‑TACTTTGTGGGAACGGCCTTGCGTCGCGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/85212‑85049 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggccttgcgtcgcgat‑GGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCACAACTCCACCCCTTCCAGCTTCTGCAACTCCTCGATCACCTGCGGCCTGGCCCGGTGCAAGGTCAAACTCCCCCCCAATCGCCGCAACCGCCGCG  >  NC_002947/85122‑85270

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.