New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	488229 =	85 (1.140)	5 (0.070)	5/238	NT	6.2%	coding (76/990 nt)	pdxA	4‑hydroxythreonine‑4‑phosphate dehydrogenase
	?	NC_002947	488276 =	72 (1.030)					coding (29/990 nt)	pdxA	4‑hydroxythreonine‑4‑phosphate dehydrogenase

CTGCAAACCTGGCTGCGCCAGATCCGCGACGAAGCCTACGTTGAAATCAAGCTGCCTGGCGCTGACCAGGCCGCCCAGTGAAGCCCCTGCGCTTCGCCGTCACCCCCGGCGAGCCGGCCGGCATAGGCCCCGACCTGTGCCTGCTGCTCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/488381‑488229 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctcgccgGGGGTGACGGCGAAGCGCAGGGGCTTCACTGGGCGGCCTGGTCAGCGCCAGGCAGCTTGATTTCAACGTAGGCTTCGTCGCGGATCTGGCGCAGCCAGGTTTGCAGCTCTTCGTCATACTTGCGGTTGCGCAGTACGCTCAGGGCCTG  >  NC_002947/488276‑488423                                                                                                                                                                                                                                                                                                               CTGCAAACCTGGCTGCGCCAGATCCGCGACGAAGCCTACGTTGAAATCAAGCTGCCTGGCGCTGACCAGGCCGCCCAGTGAAGCCCCTGCGCTTCGCCGTCACCCCCGGCGAGCCGGCCGGCATAGGCCCCGACCTGTGCCTGCTGCTCG                                                                                                                                                         >  2:278801/1‑150  TGCAAACCTGGCTGCGCCAGATCCGCGACGAAGCCTACGTTGAAATCAAGCTGCCTGGCGCTGACCAGGCCGCCCAGTGAAGCCCCTGCGCTTCGCCGTCACCCCCGGCGAGCCGGCCGGCATAGGCCCCGACCTGTGCCTGCTGCTCGC                                                                                                                                                        >  2:1565777/1‑150    CAAACCTGGCTGCGCCAGATCCGCGACGAAGCCTACGTTGAAATCAAGCTGCCTGGCGCTGACCAGGCCGCCCAGTGAAGCCCCTGCGCTTCGCCGTCACCCCCGGCGAGCCGGCCGGCATAGGCCCCGACCTGTGCCTGCTGCTCGCCG                                                                                                                                                      >  2:903901/1‑150                                                                                                 CCGTCACCCCCGGCGAGCCGGCCGGCATAGGCCCCGACCTGTGCCTGCTGCTCGCCGGGGGTGACGGCGAAGCGCAGGGGCTTCACTGGGCGGCCTGGTCAGCGCAAGGCGGCTGCATTTGAATAGATGCTGCTGCGCGGATCTGGCGCc                                                         >  2:17896/1‑149                                                                                                          CCGGCGAGCCGGCCGGCATAGGCCCCGACCTGTGCCTGCTGCTCGCCGGGGGTGACGGCGAAGCGCAGGGGCTTCACTGGGCGGCCTGGTCAGCGCCAGGCAGCTTGATTTCAACGTAGGCTTCGTCGCGGATCTGGCGCAGCCAGGTTT                                                >  2:305231/1‑150                                                                                                               GAGCCGGCCGGCATAGGCCCCGACCTGTGCCTGCTGCTCGCCGGGGGTGACGGCGAAGCGCAGGGGCTTCACTGGGCGGCCTGGTCAGC                                                                                                        >  1:1436303/1‑89                                                                                                               GAGCCGGCCGGCATAGGCCCCGACCTGTGCCTGCTGCTCGCCGGGGGTGACGGCGAAGCGCAGGGGCTTCACTGGGCGGCCTGGTCAGC                                                                                                        <  2:1436303/89‑1                                                                                                                   CGGCCGGCATAGGCCCCGACCTGTGCCTGCTGCTCGCAGGATTGGACGGCGAAGCGCAGGGGCTTCACTGGGCGGCCTGGTCAGCGCCAGGCAGCTTGATTTCAACGTAGGCTTCGTCGCGGATCTGGCGCAGCCAGGTTTGCAGCTCTT                                       <  1:17896/150‑1                                                                                                                                                  GCTCGCCGGGGGTGACGGCGAAGCGCAGGGGCTTCACTGGGCGGCCTGGTCAGCGCCAGGCAGCTTGATTTCAACGTAGGCTTCGTCGCGGATCTGGCGCAGCCAGGTTTGCAGCTCTTCGTCATACTTGCGGTTGCGCAGTACGCTCAG        <  1:1585650/150‑1                                                                                                                                                   CTCGCCGGGGGTGACGGCGAAGCGCAGGGGCTTCACTGGGCGGCCTGGTCAGCGCCAGGCAGCTTGATTTCAACGTAGGCTTCGTCGCGGATCTGGCGCAGCCAGGTTTGCAGCTCTTCGTCATACTTGCGGTTGCGCAGTACGCTCAGG       <  1:724293/150‑1                                                                                                                                                     CGCCGGGGGTGACGGCGAAGCGCAGGGGCTTCACTGGGCGGCCTGGTCAGCGCCAGGCAGCTTGATTTCAACGTAGGCTTCGTCGCGGATCTGGCGCAGCCAGGTTTGCAGCTCTTCGTCATACTTGCGGTTGCGCAGTACGCTCAGGGC     <  2:1906755/150‑1                                                                                                                                                      GCCGGGGGTGACGGCGAAGCGCAGGGGCTTCACTGGGCGGCCTGGTCAGCGCCAGGCAGCTTGATTTCAACGTAGGCTTCGTCGCGGATCTGGCGCAGCCAGGTTTGCAGCTCTTCGTCATACTTGCGGTTGCGCAGTACGCTCAGGGCC    >  1:507690/1‑150                                                                                                                                                       CCGGGGGTGACGGCGAAGCGCAGGGGCTTCACTGGGCGGCCTGGTCAGCGCCAGGCAGCTTGATTTCAACGTAGGCTTCGTCGCGGATCTGGCGCAGCCAGGTTTGCAGCTCTTCGTCATACTTGCGGTTGCGCAGTACGCTCAGGGCCT   <  1:311878/150‑1                                                                                                                                                        CGGGGGTGACGGCGAAGCGCAGGGGCTTCACTGGGCGGCCTGGTCAGCGCCAGGCAGCTTGATTTCAACGTAGGCTTCGTCGCGGATCTGGCGCAGCCAGGTTTGCAGCTCTTCGTCATACTTGCGGTTGCGCAGTACGCTCAGGGCCTG  <  1:202265/150‑1                                                                                                                                                                                                                                                                                                               CTGCAAACCTGGCTGCGCCAGATCCGCGACGAAGCCTACGTTGAAATCAAGCTGCCTGGCGCTGACCAGGCCGCCCAGTGAAGCCCCTGCGCTTCGCCGTCACCCCCGGCGAGCCGGCCGGCATAGGCCCCGACCTGTGCCTGCTGCTCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/488381‑488229 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctcgccgGGGGTGACGGCGAAGCGCAGGGGCTTCACTGGGCGGCCTGGTCAGCGCCAGGCAGCTTGATTTCAACGTAGGCTTCGTCGCGGATCTGGCGCAGCCAGGTTTGCAGCTCTTCGTCATACTTGCGGTTGCGCAGTACGCTCAGGGCCTG  >  NC_002947/488276‑488423

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.