| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 511921 | 57 (0.760) | 8 (0.120) | 8/224 | NT | 13.6% | intergenic (+58/‑90) | trpC/PP_0423 | indole‑3‑glycerol phosphate synthase/hypothetical protein |
| ? | NC_002947 | = 511969 | 51 (0.780) | intergenic (+106/‑42) | trpC/PP_0423 | indole‑3‑glycerol phosphate synthase/hypothetical protein | |||||
CTGGTGGGTGAGGCGTTCATGCGCGCCGAGCAGCCTGGCCTGGAATTACAGCGGCTGTTCTTCCCCGAGCAGGTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/511762‑511921‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcctcttcgcgggTAAACCCGCTCCTACGACAGGGCGCGTACCCGTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCATTACAGGTACAAAAAAGCCGGCAAAAACGCCGGCTTCATTTGATCAGTCCAGTTGCTGAACAGTCTTCTTCACCTGCTCGGGGAAG < NC_002947/511969‑511821 CTGGTGGGTGAGGCGTTCATGCGGGCCGAGCAGCCTGGCCTGGAATTACAGCGGCTGTTCTTCCCCGAGCAGGTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAACGGCC > 2:947518/1‑150 TGGTGGGTGAGGCGTTCATGCGCGCCGAGCAGCCTGGCCTGGAATTACAGCGGCTGTTCTTCCCCGAGCAGGTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCAGGCGGTGTTGCCGGCTTTTTTGTACCTGTAATGGCCT > 2:1398690/1‑150 GTGAGGCGTTCATGCGCGCCGAGCAGCCTGGCCTGGAATTACAGCGGCTGTTCTTCCCCGAGCAGGTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGC < 1:107616/150‑1 GAGGCGTTCATGCGCGCCGAGCAGCCTGGCCTGGAATTACAGCGGCTGTTCTTCCCCGAGCAGGTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGatc < 1:1500571/150‑4 GAGGCGTTCATGCGCGCCGAGCAGCCTGGCCTGGAATTACAGCGGCTGTTCTTCCCCGAGCAGGTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGG < 1:129345/150‑1 AGGCGTTCATGCGCGCCGAGCAGCCTGGCCTGGAATTACAGCGGCTGTTCTTCCCCGAGCAGGTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTTTAATGGCCTCTTCGCGGG > 1:607092/1‑150 AGGCGTTCATGAGCGACGAGCCACCTTGCCTGGAATTACAGCGGCTGTGCTTCCCCGAGCAGGTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGG < 2:438022/150‑1 ACAGCGGCTGTTCTTCCCCGAGCAGGTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTACGACAGGGCGCGTACCCGTGTAG < 1:968672/150‑1 CTTCCCCGAGCAGGTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGTAAACCCGCTCCTACGACAGGGCGCGTACCCGTGTAGGAGCGGGCTTGC < 1:639277/150‑1 CAGGTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGTAAACCCGCTCCTACGACAGGGCGCGTACCCGTGTAGGAGCGGGATTGCCCGCGAAGAG < 1:1398690/150‑1 AGGTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGG < 1:1389397/89‑1 AGGTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGG > 2:1389397/1‑89 AAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGTAAACCCGCTCCTACGACAGGGCGCGTACCCGTGTAGGAGCGGGCTTGCCCGCGGAGAGGCCATTACA < 2:274570/150‑1 ACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGTAAACCCGCTCCTACGACAGGGCGCGTACCCGTGTAGGAGC > 1:1524286/1‑120 ACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGTAAACCCGCTCCTACGACAGGGCGCGTACCCGTGTAGGAGC < 2:1524286/120‑1 ATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGTAAACCCGCTCCTACGACAGGGCGCGTACC > 1:1842033/1‑89 ATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGTAAACCCGCTCCTACGACAGGGCGCGTACC < 2:1842033/89‑1 TGGCCTCTTCGCGGTTAAACCCGCTCCTACGACAGGGCGCGTACCCGTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCATTACAGGTACAAAAAAGCCGGCAAAAACGCCGGCTTCATTTGATCAGTCCAGTTGCTGAACAGTCTTCTTCA < 1:446963/150‑1 GGCCTCTTCGCGGGTAAACCCGCTCCTACGACAGGGCGCGTACCCGTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCATTACAGGTACAAAAAAGCCGGCAAAAACGCCGGCTTCATTTGATCAGTCCAGTTGCTGAACAGTCTTCTTCAC < 2:1221112/150‑1 GGCCTCTTCGCGGGTAAACCCGCTCCTACGACAGGGCGCGTACCCGTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCATTACAGGTACAAAAAAGCCGGCAAAAACGCCGGCTTCATTTGATCAGTCCAGTTGCTGAACAGTCTTCTTCAC < 2:1221039/150‑1 GGCCTCTTCGCGGGTAAACCCGCTCCTACGACAGGGCGCGTACCCGTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCATTACAGGTACAAAAAAGCCGGCAAAAACGCCGGCTTCATTTGATCAGTCCAGTTGCTGAACAGTCTTCTTCAC < 1:875314/150‑1 TCTTCGCGGGTAAACCCGCTCCTACGACAGGGCGCGTACCCGTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCATTACAGGTACAAAAAAGCCGGCAAAAAC < 1:477583/101‑1 TCTTCGCGGGTAAACCCGCTCCTACGACAGGGCGCGTACCCGTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCATTACAGGTACAAAAAAGCCGGCAAAAAC > 2:477583/1‑101 GTAAACCCGCTCCTACGACAGGGCGCGTACCCGTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCATTACAGGTACAAAAAAGCCGGCAAAAACGCCGGCTTCATTTGATCAGTCCAGTTGCTGAACAGTCTTCTTCACCTGCTCGGGGAAG > 2:669755/1‑150 CTGGTGGGTGAGGCGTTCATGCGCGCCGAGCAGCCTGGCCTGGAATTACAGCGGCTGTTCTTCCCCGAGCAGGTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/511762‑511921‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcctcttcgcgggTAAACCCGCTCCTACGACAGGGCGCGTACCCGTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCATTACAGGTACAAAAAAGCCGGCAAAAACGCCGGCTTCATTTGATCAGTCCAGTTGCTGAACAGTCTTCTTCACCTGCTCGGGGAAG < NC_002947/511969‑511821 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |