| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 738613 | 65 (0.870) | 4 (0.060) | 4/230 | NT | 5.7% | coding (806/867 nt) | pilD | leader peptidase/N‑methyltransferase |
| ? | NC_002947 | = 738643 | 73 (1.080) | coding (776/867 nt) | pilD | leader peptidase/N‑methyltransferase | |||||
CGCCAAGCTCGACAAAGCGCTCGGCAGCGGCGCTTTTACCGCTACCAATGCCGCCGGTCAGGCCGAGAATCCAGGGGGTAAAGGCCGCAGTGGTCATCAGTATCCAAGCAGTTGCATGTATGAGGCGTATATTTCATCACCCCAGAGCACGGCAATCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/738456‑738613‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcacggcaatccCGTTTGGCCCTTATCTGGCAATTGCGGGGTGGATTGCCGTGCTCTGGGGTGATGAAATATACGCCTCATACATGCAACTGCTTGGATACTGATGACCACTGCGGCCTTTACCCCCTGGATTCTCGGCCTGACCGGCGGCATTGGTAGC < NC_002947/738643‑738496 CGCCAAGCTCGACAAAGCGCTCGGCAGCGGCGCTTTTACCGCTACCAATGCCGCCGGTCAGGCCGAGAATCCAGGGGGTAAAGGCCGCAGTGGTCATCAGTATCCAAGCAGTTGCATGTATGAGGCGTATATTTCATTACCCCAGAGCAC < 2:1817525/150‑1CGCCAAGCTCGACAAAGCGCTCGGCAGCGGCGCTTTTACCGCTACCAATGCCGCCGGTCAGGCCGAGAATCCAGGGGGTAAAGGCCGCAGTGGTCATCAGTATCCAAGCAGTTGCATGTATGAGGCGTATATTTCATCACCCCAGAGCAC < 2:820994/150‑1 GCCAAGCTCGACAAAGCGCTCGGCAGCGGCGCTTTTACCGCTACCAATGCCGCCGGTCAGGCCGAGAATCCAGGGGGTAAAGGCCGCAGTGGTCATCAGTATCCAAGCAGTTGCATGTATGAGGCGTATATTTCATCACCCCAGAGCACG > 1:104215/1‑150 GCCAAGCTCGACAAAGCGCTCGGCAGCGGCGCTTTTACCGCTACCAATGCCGCCGGTCAGGCCGAGAATCCAGGGGGTAAAGGCCGCAGTGGTCATCAGTATCCAAGCAGTTGCATGTATGAGGCGTATATTTCATCACCCCAGAGCACG > 1:633966/1‑150 CCAAGCTCGACAAAGCGCTCGGCAGCGGCGCTTTTACCGCTACCAATGCCGCCGGTCAGGCCGAGAATCCAGGGGGTAAAGGCCGCAGTGGTCATCAGTATCCAAGCAGTTGCATGTATGAGGCGTATATTTCATCACCCCAGAGCACGG < 2:1862489/150‑1 CAAGCTCGACAAAGCGCTCGGCAGCGGCGCTCTTACCGCTACCAATGCCGCCGGTCAGGCCGAGAATCCAGGGGGTAAAGGCCGCCGCGGTCAGCAGTATCCAAGCAGTTGCATGTATGAGGCGTATATTTCATCACCCCAGAGCACagg > 1:1024573/1‑147 AAGCTCGACAAAGCGCTCGGCAGCGGCGCTTTTACCGCTACCAATGCCGCCGGTCAGGCCGAGAATCCAGGGGGTAAAGGCCGCAGTGGTCATCAGTATCCAAGCAGTTGCATGTATGAGGCGTATATTTCATCACCCCAGAGCACGGCA > 2:1615511/1‑150 CGCTCGGCAGCGGCGCTTTTACCGCTACCAATGCCGCCGGTCAGGCCGAGAATCCAGGGGGTAAAGGCCGCAGTGGTCATCAGTATCCAAGCAGTTGCATGTATGAGGCGTATATTTCATCACCCCAGAGCACG < 1:1254235/134‑1 CGCTCGGCAGCGGCGCTTTTACCGCTACCAATGCCGCCGGTCAGGCCGAGAATCCAGGGGGTAAAGGCCGCAGTGGTCATCAGTATCCAAGCAGTTGCATGTATGAGGCGTATATTTCATCACCCCAGAGCACG > 2:1254235/1‑134 TGCCGCCGGTCAGGCCGAGAATCCAGGGGGTAAAGGCCGCAGTGGTCATCAGTATCCAAGCAGTTGCATGTATGAGGCGTATATTTCATCACCCCAGAGCACGGCAATCCCGTTTGGCCCTTATCTGGCAATTGCGGGGTGGATTGCCGT < 1:57931/150‑1 GCCGCCGGTCAGGCCGAGAATCCAGGGGGTAAAGGCCGCAGTGGTCATCAGTATCCAAGCAGTTGCATGTATGAGGCGTATATTTCATCACCCCAGAGCACGGCAATCCCGTTTGGCCCTTATCTGGCAATTGCGGGGTGGATTGCCGTG < 2:1097509/150‑1 CGAGAATCCAGGGGGTAAAGGCCGCAGTGGTCATCAGTATCCAAGCAGTTGCATGTATGAGGCGTATATTTCATCACCCCAGAGCACGGCAATCCCGTTTGGCCCTTATCTGGCAATTGCGGGGTGGATTGCC > 1:758376/1‑133 CGAGAATCCAGGGGGTAAAGGCCGCAGTGGTCATCAGTATCCAAGCAGTTGCATGTATGAGGCGTATATTTCATCACCCCAGAGCACGGCAATCCCGTTTGGCCCTTATCTGGCAATTGCGGGGTGGATTGCC < 2:758376/133‑1 GGCAATCCCGTTTGGCCCTTATCTGGCAATTGCGGGGTGGATTGCCGTGCTCTGGGGTGATGAAATATACGCCTCATACATGCAACTGCTTGGATACTGATGACCACTGCGGCCTTTACCCCCTGGATTCTCGGCCTGACCGGCGGCATT > 1:1615511/1‑150 TCCCGTTTGGCCCTTATCTGGCAAGTGCGGGGTGGATTGCCGTGCTCTGGGGTGATGAAATATACGCCTCATACATGCAACTGCTTGGATACTGATGACCACTGCGGCCTTTACCCCCTGGATTCTCGGCCTGACCGGCGGCATTGGTAG < 2:335790/150‑1 CCCGTTTGGCCCTTATCTGGCAATTGCGGGGTGGATTGCCGTGCTCTGGGGTGATGAAATATACGCCTCATACATGCAACTGCTTGGATACTGATGACCACTNCNGCCTNTANCCCCTGGANTCTCGGCCTGACCGGCGGCATTGGTAGC < 1:692237/150‑1 CGCCAAGCTCGACAAAGCGCTCGGCAGCGGCGCTTTTACCGCTACCAATGCCGCCGGTCAGGCCGAGAATCCAGGGGGTAAAGGCCGCAGTGGTCATCAGTATCCAAGCAGTTGCATGTATGAGGCGTATATTTCATCACCCCAGAGCACGGCAATCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/738456‑738613‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcacggcaatccCGTTTGGCCCTTATCTGGCAATTGCGGGGTGGATTGCCGTGCTCTGGGGTGATGAAATATACGCCTCATACATGCAACTGCTTGGATACTGATGACCACTGCGGCCTTTACCCCCTGGATTCTCGGCCTGACCGGCGGCATTGGTAGC < NC_002947/738643‑738496 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |