| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 876436 = | 71 (0.950) | 4 (0.060) | 3/242 | NT | 5.2% | coding (726/999 nt) | rsmC | 16S rRNA methyltransferase |
| ? | NC_002947 | 876490 = | 79 (1.110) | coding (672/999 nt) | rsmC | 16S rRNA methyltransferase | |||||
GTGGCCACATGCTGGACTTTGGCTGCGGTGCCGGGGTACTGGGTGCCACGCTCAAACGCCGTTACCCACAAAGCCGGGTGACCTTGCTGGACGTGGATGCCTTCGCCGTGGCCGCCAGCCGCCTGACGCTGGCTGCCAACGGCCTGGAAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/876587‑876436‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaaggcATCCACGTCCAGCAAGGTCACCCGGCT‑TTGTGGGTAACGGCGTTTGAGCGTGGCACCCAGTACCCCGGCACCGCAGCCAAAGTCCAGCATGTGGCCACCGGGCAGTCCGTCAAGATGCTTCAGGAGCAGGGCGGTACCTCGGTC > NC_002947/876490‑876633 GTGGCCACATGCTGGACTTTGGCTGCGGTGCCGGGGTACTGGGTGCCATGCTCAAACGCCGTTACCCACAAAGCCGGGTGACCTTGCTGGACGTGGATGCCTTCGCCGTGGCCGCCAGCCGCCTGACGCTGGCTGCCAACGGCCTGGAAG < 2:1497313/150‑1 ACGCTCAAACGCCGTTACCCACAAAGCCGGGTGACCTTGCTGGACGTGGATGCCTTCGCCGTGGCCGCCAGCCGCCTGACGCTGGCTGCCAACGGCCTGGAAGGC < 1:566278/105‑1 ACGCTCAAACGCCGTTACCCACAAAGCCGGGTGACCTTGCTGGACGTGGATGCCTTCGCCGTGGCCGCCAGCCGCCTGACGCTGGCTGCCAACGGCCTGGAAGGC > 2:566278/1‑105 GGATGCCTTCGCCGTGGCAGCCAGCCGCCTGACGCTGGCTGCCAACGGCCTGGAAGGCATCCACGTCCAGCAAGGTCACCCGGCT‑TTGTGGGTAACGGCGTTTGAGCGTGGCACCCAGTACCCCGGCACCGCAGCCAAAGTCCAGCATGT > 2:274445/1‑150 ATGCCTTCGCCGTGGCCGCCAGCCGCCTGACGCTGGCTGCCAACGGCCTGGAAGGCATCCACGTCCAGCAAGGTCACCCGGCT‑TTGT > 1:1707316/1‑87 ATGCCTTCGCCGTGGCCGCCAGCCGCCTGACGCTGGCTGCCAACGGCCTGGAAGGCATCCACGTCCAGCAAGGTCACCCGGCT‑TTGT < 2:1707316/87‑1 ATGCCTTCGCCGTGGCCGCCAGCCGCCTGACGCTGGCTGCCAACGGCCTGAAAGGCATCCCAGTCCAGCAAGGTCACCCGGCTGTAGTGAG‑AACGGCGGTTGAGCTGGGCACCCAGTACCCCGGCACCGCAGCCAAAGTCCAGCATGTGG > 2:1654479/1‑150 GAAGGCATCCACGTCCAGCAAGGTCACCCGGCT‑TTGTGGGTAACGGCGTTTGAGCGTGGCACCCAGTACCCCGGCACCGCAGCCAAAGTCCAGCATGTGGCCACCGGGCAGTCCGTCAAGATGCTTCAGGAGCAGGGCGGTACCTCGGTC > 1:367783/1‑150 GAAGGCATCCACGTCCAGCAAGGTCACCCGGCT‑TTGTGGGTAACGGCGTTTGAGCGTGGCACCCAGTACCCCGGCACCGCAGCCAAAGTCCAGCATGTGGCCACCGGGCAGTCCGTCAAGATGCTTCAGGAGCAGGGCGGTACCTCGGTC < 2:298556/150‑1 GAAGGCATCCACGTCCAGCAAGGTCACCCGGCT‑TTGTGGGTAACGGCGTTTGAGCGTGGCACCCAGTACCCCGGCACCGCAGCCAAAGTCCAGCATGTGGCCACCGGGCAGTCCGTCAAGATGCTTCAGGAGCAGGGCGGTACCTCGGTC < 2:422750/150‑1 GGCATCCACGTCCAGCAAGGTCACCCGGCT‑TTGTGGGTAACGGCGTTTGAGCGTGGCACCCAGTACCCCGGCACCGCAGCCAAAGTCCAG > 1:1243362/1‑90 GGCATCCACGTCCAGCAAGGTCACCCGGCT‑TTGTGGGTAACGGCGTTTGAGCGTGGCACCCAGTACCCCGGCACCGCAGCCAAAGTCCAG < 2:1243362/90‑1 GTGGCCACATGCTGGACTTTGGCTGCGGTGCCGGGGTACTGGGTGCCACGCTCAAACGCCGTTACCCACAAAGCCGGGTGACCTTGCTGGACGTGGATGCCTTCGCCGTGGCCGCCAGCCGCCTGACGCTGGCTGCCAACGGCCTGGAAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/876587‑876436‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaaggcATCCACGTCCAGCAAGGTCACCCGGCT‑TTGTGGGTAACGGCGTTTGAGCGTGGCACCCAGTACCCCGGCACCGCAGCCAAAGTCCAGCATGTGGCCACCGGGCAGTCCGTCAAGATGCTTCAGGAGCAGGGCGGTACCTCGGTC > NC_002947/876490‑876633 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |