New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1025296	32 (0.430)	6 (0.100)	5/200	NT	19.0%	intergenic (‑147/+82)	opdP/dppA‑II	glycine‑glutamate dipeptide porin/dipeptide ABC transporter substrate‑binding protein
	?	NC_002947	= 1025335	26 (0.440)					intergenic (‑186/+43)	opdP/dppA‑II	glycine‑glutamate dipeptide porin/dipeptide ABC transporter substrate‑binding protein

GCCAGTGCGGTCAAGGTGAATACTTTCAAGGTTAAAGCTCCCTTTCTTTTCTAGTTATGGCCGGCCTTGTGGGCCGGGTGATTGCTGCGGTGTTGCCAGGGGTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCC‑GTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1025121‑1025296 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcctcttcgcgggcaagcccgctcccACAGGATCTCGACAGGTTCGGACACTGCGCCCTACCTGAGGGAGCGGGCTTGCCCGCGAAGAGGCCAGAAC‑GGCCAACACAACGCCCCGATTCTGCCCGGCGATCCCGCGGCACCCCTGGCAACACCGCAGCAATCACCCGGCCCA  <  NC_002947/1025335‑1025190                                                                                                                                                                                                                                                                                                                                      GCCAGTGCGGTCAAGGTGAATACTTTCAAGGTTAAAGCTCCCTTTCTTTTCTAGTTATGGCCGGCCTTGTGGGCCGGGTGATTGCTGCGGTGTTGCCAGGGGTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCC‑GTTCTG                                                                                                                                                                               <  2:687529/150‑1           TCAAGGTGAATACTTTCAAGGTTAAAGCTCCCTTTCTTTTCTAGTTATGGCCGGCCTTGTGGGCCGGGTGATTGCTGCGGTGTTGCCAGGGGTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCC‑GTTCTGGCCTCTTCGC                                                                                                                                                                     >  2:258797/1‑150              AGGTGAATACTTTCAAGGTTAAAGCTCCCTTTCTTTTCTAGTTATGGCCGGCCTTGTGGGCCGGGTGATTGCTGCGGTGTTGCCAGGGGTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCC‑GTTCTGGCCTCTTC                                                                                                                                                                       >  2:1896981/1‑145              AGGTGAATACTTTCAAGGTTAAAGCTCCCTTTCTTTTCTAGTTATGGCCGGCCTTGTGGGCCGGGTGATTGCTGCGGTGTTGCCAGGGGTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCC‑GTTCTGGCCTCTTC                                                                                                                                                                       <  1:1896981/145‑1                   AATACTTTCAAGGTTAAAGCTCCCTTTCTTTTCTAGTTATGGCCGGCCTTGTGGGCCGGGTGATTGCTGCGGTGTTGCCAGGGGTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCC‑GTTCTGGCCTCTTCGCGGGCAAGC                                                                                                                                                             >  1:1030418/1‑150                   AATACTTTCAAGGTTAAAGCTCCCTTTCTTTTCTAGTTATGGCCGGCCTTGTGGGCCGGGTGATTGCTGAGATGTGGCCAGGGGTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCC‑GTTCTGGCCTCTTCGCGGGCAAGC                                                                                                                                                             <  1:1561877/150‑1                     TACTTTCAAGGTTAAAGCTCCCTTTCTTTTCTAGTTATGGCCGGCCTTGTGGGCCGGGTGATTGCTGCGGTGTTGCCAGGGGTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCC‑GTTCTGGCCTCTTCGCGGGCAA                                                                                                                                                               <  2:748349/146‑1                     TACTTTCAAGGTTAAAGCTCCCTTTCTTTTCTAGTTATGGCCGGCCTTGTGGGCCGGGTGATTGCTGCGGTGTTGCCAGGGGTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCC‑GTTCTGGCCTCTTCGCGGGCAA                                                                                                                                                               >  1:748349/1‑146                          TCAAGGTTAAAGCTCCCTTTCTTTTCTAGTTATGGCCGGCCTTGTGGGCCGGGTGATTGCTGCGGTGTTGCCAGGGGTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCC‑GTTCTGGCCTCTTCGCGGGCAAGCCCGCTCC                                                                                                                                                      <  1:243276/150‑1                          TCAAGGTTAAAGCTCCCTTTCTTTTCTAGTTATGGCCGGCCTTGTGGGCCGGGTGATTGCTGCGGTGTTGCCAGGGGTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCC‑GTTCTGGCCTCTTCGCGGGCAAGCCCGCTCC                                                                                                                                                      <  1:539154/150‑1                           CAAGGTTAAAGCTCCCTTTCTTTTCTAGTTATGGCCGGCCTTGTGGGCCGGGTGATTGCTGCGGTGTTGCCAGGGGTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCC‑GTTCTGGCCTCTTCGCGGGCTTGCCCGCgaag                                                                                                                                                     <  2:1700439/150‑5                            AAGGTTAAAGCTCCCTTTCTTTTCTAGTTATGGCCGGCCTTGTGGGCCGGGTGATTGCTGCGGTGTTGCCAGGGGTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCC‑GTTCTGGCCTCTTCGCGG                                                                                                                                                                   >  2:639393/1‑135                            AAGGTTAAAGCTCCCTTTCTTTTCTAGTTATGGCCGGCCTTGTGGGCCGGGTGATTGCTGCGGTGTTGCCAGGGGTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCC‑GTTCTGGCCTCTTCGCGG                                                                                                                                                                   <  1:639393/135‑1                                    AGCTCCCTTTCTTTTCTAGTTATGGCCGGCCTTGTGGGCCGGGTGATTGCTGCGGTGTTGCCAGGGGTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCC‑GTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGATCT                                                                                                                                            >  1:1002779/1‑150                                                                    TGTGGGCCGGGTGATTGCTGCGGTGTTGCCAGGGGTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCC‑GTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGATCTCGACCGGTTCGGACACTGCGCCCTACCTGAGG                                                                                                            <  2:1620397/150‑1                                                                          CCGGGTGATTGCTGCGGTGTTGCCAGGGGTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCC‑GTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGATCTCGACAGGTTCGGACACTGCGCCCTACCTGAGGGAGCGG                                                                                                      <  2:1002779/150‑1                                                                           CGGGTGATTGCTGCGGTGTTGCCAGGGGTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTAGCCAGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGATCTCGACAGGTTCGGACACTGCGCCCTACCTGAGGGAGCGG                                                                                                      <  1:374124/150‑1                                                                                                           GCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCC‑GTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGATCTCGACAGGTTCGGACACTGCGCCCTACCTGAG                                                                                                             <  1:568288/110‑1                                                                                                           GCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCC‑GTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGATCTCGACAGGTTCGGACACTGCGCCCTACCTGAG                                                                                                             >  2:568288/1‑110                                                                                                             GGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCC‑GTTCTGGCCTCTTCGCGGGCAAGCCC                                                                                                                                                           >  1:1021696/1‑62                                                                                                             GGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCC‑GTTCTGGCCTCTTCGCGGGCAAGCCC                                                                                                                                                           <  2:1021696/62‑1                                                                                                                                                             TTCGCGGGCAAGCCCGCTCCCACAGGATCTCGACAGGTTCGGACACTGCGTCCTACCTGAGGGAGCGGGCTTGCCCGCGAAGAGGCCAGAAC‑GGCCAACACAACGCCCCGATTCTGCCCGGCGATCCCGCGGCACCCCTGGCAACACCGC                   <  1:1056676/150‑1                                                                                                                                                                  GGGCAAGCCCGCTCCCACAGGATCTCGACAGGTTCGGACACTGCGCCCTACCTGAGGGAGCGGGCTTGCCCGCGAAGAGGCCAGAAC‑GGCCAACACAACGCCCCGATTCTGCCCGGCGATCCCGCGGCACCCCTGGCAACACCGCAGCAA              >  1:1157899/1‑150                                                                                                                                                                  GGGCAAGCCCGCTCCCACAGGATCTCGACAGGTTCGGACACTGCGCCCTACCTGAGGGAGCGGGCTTGCCCGCGAAGAGGCCAGAAC‑GGCCAACACAACGCCCCGATTCTGCCCGGCGATCCCGCGGCACCCCTGG                            <  2:1618555/136‑1                                                                                                                                                                  GGGCAAGCCCGCTCCCACAGGATCTCGACAGGTTCGGACACTGCGCCCTACCTGAGGGAGCGGGCTTGCCCGCGAAGAGGCCAGAAC‑GGCCAACACAACGCCCCGATTCTGCCCGGCGATCCCGCGGCACCCCTGG                            >  1:1618555/1‑136                                                                                                                                                                        GCCCGCTCCCACAGGATCTCGACAGGTTCGGACACTGCGCCCTACCTGAGGGAGCGGGCTTGCCCGCGAAGAGGCCAGAAC‑GGCCAACACAACGCCCCGATTCTGCCCGGCGATCCCGCGGCACCCCTGGCAACACCGCAGCAATCACCC        >  2:380426/1‑150                                                                                                                                                                        GCCCGCTCCCACAGGATCTCGACAGGTTCGGACACTGCGCCCTACCTGAGGGAGCGGGCTTGCCCGCGAAGAGGCCAGAAC‑GGCCAACACAACGCCCCGATTCTGCCCGGC                                               >  2:129887/1‑111                                                                                                                                                                        GCCCGCTCCCACAGGATCTCGACAGGTTCGGACACTGCGCCCTACCTGAGGGAGCGGGCTTGCCCGCGAAGAGGCCAGAAC‑GGCCAACACAACGCCCCGATTCTGCCCGGC                                               <  1:129887/111‑1                                                                                                                                                                         CCCGCTCCCACAGGATCTCGACAGGTTCGGACACTGCGCCCTACCTGAGGGAGCGGGCTTGCCCGCGAAGAGGCCAGAAC‑GGCCAACACAACGCCCCGATTCTGCCCGGCGATCCCGCGGCACCCCTGGCAACACCGCAGCAATCACCCG       >  1:1652357/1‑150                                                                                                                                                                         CCCGCTCCCACAGGATCTCGACAGGTTCGGACACTGCGCCCTACCTGAGGGAGCGGGCTTGCCCGCGAAGAGGCCAGAAC‑GGCCAACACAACGCCCCGATTCTGCACGGCGATCCCGCGGCACCCCTGGCACCACCGCAGCAATCACCCc       >  2:827870/1‑149                                                                                                                                                                          CCGCTCCCACAGGATCTCGACAGGTTCGGACACTGCGCCCTACCTGAGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACACAACGCCCCGATTCTGCCCGGCGATCCCGCGGCACCCCTGGCAACACCGCAGCAATCCCCCG       >  2:400263/1‑150                                                                                                                                                                          CCGCTCCCACAGGATCTCGACAGGTTCAGGCTCTGCGCCCTACCTGAGGGAGCGGGCTTGCCCGCGAAGAGGCCAGAAC‑GGCCAACACAACGCCCCGATTCTGCCCGGCGATCCCGCGGCACCCCTGGCAACACCGCAGCAATCACCCGG      >  1:1298842/1‑150                                                                                                                                                                              TCCCACAGGATCTCGACAGGTTCGGACACTGCGCCCTACCTGAGGGAGCGGGCTTGCCCGCGAAGAGGCCAGAAC‑GGCCAACACAACGCCCCGATTCTGCCCGGCGATCCCGCGGCACCCCTGGCAACACCGCAGCAATCACCCGGCCCA  >  2:1180335/1‑150                                                                                                                                                                                                                                                                                                                                      GCCAGTGCGGTCAAGGTGAATACTTTCAAGGTTAAAGCTCCCTTTCTTTTCTAGTTATGGCCGGCCTTGTGGGCCGGGTGATTGCTGCGGTGTTGCCAGGGGTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCC‑GTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1025121‑1025296 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcctcttcgcgggcaagcccgctcccACAGGATCTCGACAGGTTCGGACACTGCGCCCTACCTGAGGGAGCGGGCTTGCCCGCGAAGAGGCCAGAAC‑GGCCAACACAACGCCCCGATTCTGCCCGGCGATCCCGCGGCACCCCTGGCAACACCGCAGCAATCACCCGGCCCA  <  NC_002947/1025335‑1025190

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.