| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1037796 | 57 (0.760) | 10 (0.160) | 8/208 | NT | 16.3% | intergenic (+38/+78) | PP_0896/PP_0897 | carbon‑nitrogen hydrolase family protein/class 1 fumarate hydratase |
| ? | NC_002947 | = 1037828 | 56 (0.920) | intergenic (+70/+46) | PP_0896/PP_0897 | carbon‑nitrogen hydrolase family protein/class 1 fumarate hydratase | |||||
GCAGCTGAACCCGGACTGCAGCCAGTGGCTGGTGTGTGAGGTAGATTTGGAGGAAGTGCGGCGGGTGAGGCGGGAAGGGCAGGTGTTTACCTGGCGGGACTGGCCGGAGCAGTTCGAGAGAGTCCTGTGATGACTGTGGCGGCCTCTTCGCGGGCAAGCCCGCTCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1037629‑1037796‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttcgcgggcaagcccgctcccaCACGTACAGCGCAAGCCAGAAGGCTACGCATTTGGGAGCGGGCTTGCCCGCGAAGAGGCCGCCACAGTCATCACAGGACTCTCTCGAACTGCTCCGGCCAGTCCCGCCAGGTAAACACCTGCCCTTCCCGCCTCACCCGCCGCACTTCC < NC_002947/1037828‑1037680 GCAGCTGAACCCGGACTGCAGCCAGTGGCTGGTGTGTGAGGTAGATTTGGAGGAAGTGCGGCGGGTGAGGCGGGAAGGGCAGGTGTTTACCTGGCGGGACTGGCCGGAGCAGTTCGAGAGAGTCCTGTGATGACTGTGGCGGCCTCTTCG > 1:1007211/1‑150 CAGCTGAACCCGGACTGCAGCCAGTGCGTTGTTGGTGAGGTAGATTTGGAGGAAGTGCGGCGGGTGAGGCGGGAAGGGCAGGTGTTTACCTGGCGGGACTGGCCGGAGCAGTTCGAGAGAGTCCTGTGATGACTGTGGCGGCCTCTTCGC > 1:1790240/1‑150 GCTGAACCCGGACTGCAGCCAGTGGCTGGTGTGTGAGGTAGATTTGGAGGAAGTGCGGCGGGTGAGGCGGGAAGGGCAGGTGTTTACCTGGCGGGACTGGCCGGAGCAGTTCGAGAGAGTCCTGTGATGACTGTGGCGGCCTCTTCGCGG < 2:1440001/150‑1 GCTGAACCCGGACTGCAGCCAGTGGCTGGTGTGTGAGGTAGATTTGGAGGAAGTGCGGCGGGTGAGGCAGGACACCCGGATGTTTACCTACGGTGAGTTGCCGGAGCAGTTCGAGAGAGTCCTGTGATGACTGTGGCGGCCTCTTCGCGG < 1:1178245/150‑1 CCGGACTGCAGCCAGTGGCTGGTGTGTGAGGTAGATTTGGAGGAAGTGCGGCGGGTGAGGCGGGAAGGGCAGGTGTTTACCTGGCGGGACTGGCCGGAGCAGTTCGAGAGAGTCCTGTGATGACTGTGGCGGCCTCTTCGCGGGCAAGC < 2:972970/149‑1 CCGGACTGCAGCCAGTGGCTGGTGTGTGAGGTAGATTTGGAGGAAGTGCGGCGGGTGAGGCGGGAAGGGCAGGTGTTTACCTGGCGGGACTGGCCGGAGCAGTTCGAGAGAGTCCTGTGATGACTGTGGCGGCCTCTTCGCGGGCAAGC > 1:972970/1‑149 GCGGGGGAGGCGGGAAGGGCAGGTGTTTACCTGGCGGGACTGGCCGGAGCAGTTCGAGAGAGTCCTGTGATGACTGTGGCGGCCTCTTCGCGGGCAAGCCCGCTCCCACACGTACAGCGCAAGCCAGAAGGCTACGCATTTGGGAGCGGG < 1:378791/150‑1 GGTGAGGCGGGAAGGGCAGGTGTTTACCTGGCGGGACTGGCCGGAGCAGTTCGAGAGAGTCCTGTGATGACTGTGGCGGCCTCTTCGCGGGCAAGCCCGCTCCCACACGTACAGCGCAAGCCAGAAGGCTACGCATTTGGGAGCGGGCTT < 1:462233/150‑1 AGGTGTTTACCTGGCGGGACTGGCCGGAGCAGTTCGAGAGAGTCCTGTGATGACTGTGGCGGCCTCTTCGCGGGCAAGCCCGCTCCCACACGTACAGCGCAAGCCAGAAGGCTACGCATTTGGGAGCGGGCTTGCCCGCGAAGAGGCC < 2:279329/148‑1 AGGTGTTTACCTGGCGGGACTGGCCGGAGCAGTTCGAGAGAGTCCTGTGATGACTGTGGCGGCCTCTTCGCGGGCAAGCCCGCTCCCACACGTACAGCGCAAGCCAGAAGGCTACGCATTTGGGAGCGGGCTTGCCCGCGAAGAGGCC > 1:279329/1‑148 TTTACCTGGCGGGACTGGCCGGAGCAGTTCGAGAGAGTCCTGTGATGACTGCGGCGGCTGCTTCGCGGGCAAGCCCGCTCCCACACGTACAGCGCAAGCCAGAAGGCTACGCATTTGGGAGCGG < 2:590513/124‑1 TTTACCTGGCGGGACTGGCCGGAGCAGTTCGAGAGAGTCCTGTGATGACTGCGGCGGCTGCTTCGCGGGCAAGCCCGCTCCCACACGTACAGCGCAAGCCAGAAGGCTACGCATTTGGGAGCGG > 1:590513/1‑124 TTCGAGAGAGTCCTGTGATGACTGTGGCGGCCTCTTCGCGGGCAAGCCCGCTCCCACACGTACAGCGCAAGCCAGAAGGCTACGCATTTGGGAGCGGG > 1:1135510/1‑98 TTCGAGAGAGTCCTGTGATGACTGTGGCGGCCTCTTCGCGGGCAAGCCCGCTCCCACACGTACAGCGCAAGCCAGAAGGCTACGCATTTGGGAGCGGG < 2:1135510/98‑1 TTCGAGAGAGTCCTGTGATGACTGTGGCGGCCTCTTCGCGGGCAAGCCCGCTCCCACACGTACAGCGCAAGCCAGAAGGCTAC > 2:1250133/1‑83 TTCGAGAGAGTCCTGTGATGACTGTGGCGGCCTCTTCGCGGGCAAGCCCGCTCCCACACGTACAGCGCAAGCCAGAAGGCTAC < 1:1250133/83‑1 CTTCGCGGGCAAGCCCGCTCCCACACGTACAGCGCAAGCCAGAAGGCTACGCATTTGGGAGCGGGCTTGCCCGCGAAGAGGCCGCCACAGTCATCACAGGACTCTCTCGAACTGCTCCGGCCAGTCCCGCCAGGTAAACACCTGCCCTTC < 1:180782/150‑1 TTCGCGGGCAAGCCCGCTCCCACACGTACAGCGCAAGCCAGAAGGCTACGCATTTGGGAGCGGGCTTGCCCGCGAAGAGGCCGCCACAGTCATCACAGGACTCTCTCGAACTGCTCCGGCCAGTCCCGCCAGGTAAACACCTGCCCTTCC > 2:916096/1‑150 GCCCGCTCCCACACGTACAGCGCAAGCCAGAAGGCTACGCATTTGGGAGCGGGCTTGCCCGCGAAGAGGCCGCCACAGTCATCACAGGA > 2:1150655/1‑89 GCCCGCTCCCACACGTACAGCGCAAGCCAGAAGGCTACGCATTTGGGAGCGGGCTTGCCCGCGAAGAGGCCGCCACAGTCATCACAGGA < 1:1150655/89‑1 CCCGCGCCCACACCTACAGCGCAAGCCAGAAGGCTACGCATTTGGGAGCGGGCTTGCCCGCGAAGAGGCCGCCACAGTCATCACAGGACTCTCTCGAACTGCTCCGGCCAGTCCCGCCAGGTAAACACCTGCCCTTCCCGCCTCACCCGC < 1:857008/150‑1 ACACGTACAGCGCAAGCCAGAAGGCTACGCATTTGGGAGCGGGCTTGCCCGCGAAGAGGCCGCCACAGTCATCACAGGACTCTCTCGAACTGCTCCGGCCAGTCCCGCCAGGTAAACACCTGCCCTTCCCGCCTCACCCGCCGCACTTCC > 2:1790240/1‑150 GCAGCTGAACCCGGACTGCAGCCAGTGGCTGGTGTGTGAGGTAGATTTGGAGGAAGTGCGGCGGGTGAGGCGGGAAGGGCAGGTGTTTACCTGGCGGGACTGGCCGGAGCAGTTCGAGAGAGTCCTGTGATGACTGTGGCGGCCTCTTCGCGGGCAAGCCCGCTCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1037629‑1037796‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttcgcgggcaagcccgctcccaCACGTACAGCGCAAGCCAGAAGGCTACGCATTTGGGAGCGGGCTTGCCCGCGAAGAGGCCGCCACAGTCATCACAGGACTCTCTCGAACTGCTCCGGCCAGTCCCGCCAGGTAAACACCTGCCCTTCCCGCCTCACCCGCCGCACTTCC < NC_002947/1037828‑1037680 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |