New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1150008 =	69 (0.930)	10 (0.140) +CTGG	6/246	NT	13.8%	intergenic (‑249/+8)	PP_1008/gapA	RNA polymerase subunit sigma‑24/glyceraldehyde‑3‑phosphate dehydrogenase
	?	NC_002947	= 2071280	60 (0.800)					intergenic (+189/+38)	PP_1846/PP_1847	group II intron‑encoding maturase/TonB‑dependent ferric siderophore receptor

AACGGGCGGATGCTCAAGGTGCTGGCCTGGTATGACAACGAGTGGGGGTTCAGCAACCGGATGCTGGACAACTGCCTGGCGCTGCACCGGGCTGGCTGACGCGACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1150114‑1150008 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGG  <  NC_002947/2071280‑2071216                                                                                                            ||||                                                                  AACGGGCGGATGCTCAAGGTGCTGGCCTGGTATGACAACGAGTGGGGGTTCAGCAACCGGATGCTGGACAACTGCCTGGCGCTGCACCGGGCTGGCTGACGCGATCCCTGGGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGC                            <  2:1487759/150‑1                         GCCTGGTATGACAACGAGTGGGGGTTCAGCAACCGGATGCTGGACAACTGCCTGGCGCTGCACCGGGCTGGCTGGCGCGATCCCTGGGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGC    >  1:1647564/1‑150                         GCCTGGTATGACAACGAGTGGGGGTTCAGCAACCGGATGCTGGACAACTGCCTGGCGCTGCACCGGGCTGGCTGGCGCGATCCCTGGGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGC    <  2:1647564/150‑1                           CTGGTATGACAACGAGTGGGGGTTCAGCAACCGGATGCTGGACAACTGCCTGGCGCTGCACCGGGCTGGCTGACGCGACCCGTGTGGGAGCGGCCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGTGG  <  1:1500572/150‑1                           CTGGTATGACAACGAGTGGGGGTTCAGCAACCGGATGCTGGACAACTGCCTGGCGCTGCACCGGGCTGGCTGACGCGACCCGTGTGGGAGCGGCCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGG  <  1:100173/150‑1                           CTGGTATGACAACGAGTGGGGGTTCAGCAACCGGATGCTGGACAACTGCCTGGCGCTGCACCGGGCTGGCTGACGCGACCCGTGGGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGG  <  1:475883/150‑1                                                       AACCGGATGCTGGACAACTGCCTGGCGCTGCACCGGGCTGGCTGACGCGACCCGTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGG  >  1:652142/1‑122                                                       AACCGGATGCTGGACAACTGCCTGGCGCTGCACCGGGCTGGCTGACGCGACCCGTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGG  <  2:652142/122‑1                                                                         TGCCTGGCGCTGCACCGGGCTGGCTGACGCGATCCCTGGGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGG  <  1:1179293/104‑1                                                                         TGCCTGGCGCTGCACCGGGCTGGCTGACGCGATCCCTGGGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGG  >  2:1179293/1‑104                                                                                                            ||||                                                                  AACGGGCGGATGCTCAAGGTGCTGGCCTGGTATGACAACGAGTGGGGGTTCAGCAACCGGATGCTGGACAACTGCCTGGCGCTGCACCGGGCTGGCTGACGCGACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1150114‑1150008 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGG  <  NC_002947/2071280‑2071216

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.