| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1156311 = | 41 (0.550) | 11 (0.170) | 9/222 | NT | 24.2% | intergenic (+8/‑208) | PP_1013/yihS | sensor histidine kinase/aldose‑ketose isomerase |
| ? | NC_002947 | 1156418 = | 33 (0.510) | intergenic (+115/‑101) | PP_1013/yihS | sensor histidine kinase/aldose‑ketose isomerase | |||||
GAAGGACGACGGGATTGTCACCGGGCAGTGACATTTTGGGTGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAAGCCCGCACAGGCA‑CCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1156454‑1156311‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgcacaggca‑cccAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTATGTGAACAGTTGGCTCAATGCCCCGGCC > NC_002947/1156418‑1156566 GAAGGACGACGGGATTGTCACCGGGCAGTGACATTTTGGGTGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAAGCCCGCA > 1:1624770/1‑135GAAGGACGACGGGATTGTCACCGGGCAGTGACATTTTGGGTGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAAGCCCGCA < 2:1624770/135‑1 TTCGCGGGTGAACCCGCTCCTACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGA > 1:234992/1‑129 TTCGCGGGTGAACCCGCTCCTACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGA < 2:234992/129‑1 CCGCTCCTACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAAGCCCGCACAGGCACCCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCA > 1:1719429/1‑150 CCGCTCCTACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAAGCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCC > 2:250925/1‑132 CCGCTCCTACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAAGCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCC < 1:250925/132‑1 CCGCTCCTACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAAGCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGT > 1:1634205/1‑114 CCGCTCCTACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAAGCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGT < 2:1634205/114‑1 GCTCCTACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAAGCCCGCACAGGCACCCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAA > 1:23078/1‑150 TCCTACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAAGCCCGCACAGGCACCCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACG > 2:1184880/1‑150 TACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAAGCCCGCACAGGCACCCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACT > 1:1495384/1‑150 CGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAAGCCCGCACAGGCACCCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAA < 2:1719429/150‑1 GCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTATGTGAACAGTTGG > 1:1764115/1‑150 GCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCT > 1:1289011/1‑112 GCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCT < 2:1289011/112‑1 CCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCCAGCTGGCCCAGCACCTCCCCCAACCTGGATGTGAACAGTTGGac > 2:495869/1‑148 CCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTATGTGAACAGTTGGCT > 2:1814107/1‑150 AGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTATGTGAACAGTCGGCCCAATcc > 1:54179/1‑148 A‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCC > 1:524743/1‑114 A‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCC < 2:524743/114‑1 CCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTATGTGAACAGTTGGCTCAATGCCCCGGC > 2:1412935/1‑150 CAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTATGTGAACAGTTGGCTCAATGCCCCGGCC > 2:858531/1‑150 CAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTATGTGAACAG < 2:436726/131‑1 CAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTATGTGAACAG > 1:436726/1‑131 CAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGT < 2:1065698/40‑1 CAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGT > 1:1065698/1‑40 GAAGGACGACGGGATTGTCACCGGGCAGTGACATTTTGGGTGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAAGCCCGCACAGGCA‑CCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1156454‑1156311‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgcacaggca‑cccAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTATGTGAACAGTTGGCTCAATGCCCCGGCC > NC_002947/1156418‑1156566 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |