New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1273270	82 (1.100)	5 (0.080)	5/224	NT	7.0%	intergenic (+55/+113)	PP_1113/PP_1114	pyridoxal‑phosphate dependent enzyme family protein/SEC‑C domain‑containing protein
	?	NC_002947	= 1273329	61 (0.930)					intergenic (+114/+54)	PP_1113/PP_1114	pyridoxal‑phosphate dependent enzyme family protein/SEC‑C domain‑containing protein

ATGGCCCAGCACCCGCGGTATGTCGAGACCACCCTGGTGACCATCGCCTATGATGCCGGCCTCTGGTACCAGGACCTGTTGGGGGCAAACCGGCGAAAGGCCGCGTAGCCACCTGTGTCAGGCTCATGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1273108‑1273270 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑actgtgggagcgggcGCGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGTCGCCTGCTTCGCGGGCTTGCCCGCTCCCACAGTTTCCGTGCCAGCCTCTGGATCATGAGCCTGACACAGGTGGCTACGCGGCCTTTCGCCGGTTTGCCCCCAACAGG  <  NC_002947/1273329‑1273182                                                                                                                                                                                                                                                                                                                         ATGGCCCAGCACCCGCGGTATGTCGAGACCACCCTGGTGACCATCGCCTATGATGCCGGCCTCTGGTACCAGGACCTGTTGGGGGCAAACCGGCGAAAGGCCGCGTAGCCACCTGTGTCAGGCTCATGATCCAGAGGCTGGCACGGAAAC                                                                                                                                                                   >  1:677427/1‑150  TGGCCCAGCACCCGCGGTATGTCGAGACCACCCTGGTGACCATCGCCTATGATGCCGGCCTCTGGTACCAGGACCTGTTGGGGGCAAACCGGCGAAAGGCCGCGTAGCCACCTGTGTCAGGCTCATGATCCAGAGGCTGGCACGGAAACT                                                                                                                                                                  >  1:1306536/1‑150   GGCCCAGCACCCGCGGTATGTCGAGACCACCCTGGTGACCATCGCCTATGATGCCGGCCTCTGGTACCAGGACCTGTTGGGGGCAAACCGGCGAAAGGCCGCGTAGCCACCTGTGTAAGGCTCATGATCCAGAGGCTGGCACGGAAACTG                                                                                                                                                                 >  1:328416/1‑150     CCCAGCACCCGCGGTATGTCGAGACCACCCTGGTGACCCTCGCACATGAGGGCGGCCTCTGGTACCAGGACCTGTTGGGGGCAAACCGGCGAAAGGCCGCGTAGCCACCTGTGTCAGGCTCATGATCCAGAGGCTGGCACGGAAACTGTG                                                                                                                                                               <  1:1069837/150‑1     CCCAGCACCCGCGGTATGTCGAGACCACCCTGGTGACCATCGCCTATGATGCCGGCCTCTGGTACCAGGACCTGTTGGGGGCAAACCGGCGAAAGGCCGCGTAGACACCGGTGTCAGGCTCATGATCCAGAGGCTGGCACGGAAACTGTG                                                                                                                                                               <  1:1087528/150‑1        AGCACCCGCGGTATGTCGAGACCACCCTGGTGACCATCGCCTATGATGCCGGCCTCTGGTACCAGGACCTGTTGGGGGCAAACCGGCGAAAGGCCGCGTAGCCACCTGTGTCAGGCTCATGATCCAGAGGCTGGCTCGAACACTGTGGGA                                                                                                                                                            <  1:141423/150‑1            CCCGCGGTATGTCGAGACCACCCTGGTGACCATCGCCTATGATGCCGGCCTCTGGTACCAGGACCTGTTGGGGGCAAACCGGCGAAAGGCCGCGTAGCCACCTGTGTCAGGCTCATGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGG                                                                                                                                                        <  1:1862804/150‑1             CCGCGGTATGTCGAGACCACCCTGGTGACCATCGCCTATGATGCCGGCCTCTGGTACCAGGACCTGTTGGGGGCAAACCGGCGAAAGGCCGCGTAGCCACCTGTGTCAGGCTCATGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGGG                                                                                                                                                       >  1:452636/1‑150                                       GACCATCGCCTATGATGCCGGCCTCTAGTACCAGGACCTGTTGGGGGCAAACCGGCGAAAGGCCGCGTAGCCACCTGTGTCAGGCTCATGATCCAGA‑GATGGCTCGAACACTGTGGGAGCGGGCGCGCCCGCGAACACGGGCGAAGCCCG                                                                                                                            >  2:46604/1‑150                                                                   TACCAGGACCTGTTGGGGGCAAACCGGCGAAAGGCCGCGTAGCCACCTGTGTCAGGCTCATGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGGGCGCGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGTCGCCTGCTTCGC                                                                                                 >  1:940307/1‑150                                                                         GACCTGTTGGGGGCAAACCGGCGAAAGGCCGCGTAGCCACCTGTGTCAGGCTCATGATCCAGAGGCTGGCACGGAAACTGT                                                                                                                                                                <  1:1873509/81‑1                                                                         GACCTGTTGGGGGCAAACCGGCGAAAGGCCGCGTAGCCACCTGTGTCAGGCTCATGATCCAGAGGCTGGCACGGAAACTGT                                                                                                                                                                >  2:1873509/1‑81                                                                            CTGTTGGGGGCAAACCGGCGAAAGGCCGCGTAGCCACCTGTGTCAGGCTCATGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGGGCGCGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGTCGCCTGCTTCGCGGGCTTGCC                                                                                        <  2:677427/150‑1                                                                                 GGGGGCAAACCGGCGAAAGGCCGCGTAGCCACCTGTGTCAGGCTCATGATCCAGA‑GATGGCTCGAACACTGTGGGAGCGGGCGCGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGTCGCCTGCTTCGCGGGCTTGCCCGCTCC                                                                                  <  1:46604/150‑1                                                                                    GGCAAACCGGCGAAAGGCCGCGTAGCCACCTGTGTCAGGCTCATGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGGGCGCGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGTCGCCTGCTTCGCGGGCTTGCCCGCTCCCA                                                                                <  2:940307/150‑1                                                                                                                                                     ACTGTGGGAGCGGGCGCGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGTCGCCTGCTTCGCGGGCTTGCCCGCTCCCACAGTTTCCGTGCCAGCCTCTGGATCATGAGCCTGACACAGGT                                      >  1:1549760/1‑127                                                                                                                                                     ACTGTGGGAGCGGGCGCGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGTCGCCTGCTTCGCGGGCTTGCCCGCTCCCACAGTTTCCGTGCCAGCCTCTGGATCATGAGCCTGACACAGGT                                      <  2:1549760/127‑1                                                                                                                                                          GGGAGCGGGCGCGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGTCACGTGATTCACGGGCTTGCACACGCCTACAGTTTCCGTGCCAGCCTCTGGATCATGAGCCTGACACAGGTGGCTACGCGGCCTTTCGCCGGTTTGCCC          >  1:1671687/1‑150                                                                                                                                                           GGAGCGGGCGCGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGTCGCCTGCTTCGCGGGCTTGCCCGCTCCCACAGTTTCCGTGCCAGCCTCTGGATCATGAGCCTGACACAGGTGGCTACGCGGCCTTTCGCCGGTTTGCCCC         >  2:1306536/1‑150                                                                                                                                                            GAGCGGGCGCGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGTCGCCTGCTTCGCGGGCTTGCCCGCTCCCACAGTTTCCGTGCCAGCCTCTGGATCATGAGCCTGACACAGGTGGCTACGCGGCCTTTCGCCGGTTTGCCCCC        <  1:375509/150‑1                                                                                                                                                            GAGCGGGCGCGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGTCGCCTGCTTCGCGGGCTTGCCCGCTCCCACAGTTTCCGTGCCAGCCTCTGGATC                                                       <  2:1816524/103‑1                                                                                                                                                            GAGCGGGCGCGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGTCGCCTGCTTCGCGGGCTTGCCCGCTCCCACAGTTTCCGTGCCAGCCTCTGGATC                                                       >  1:1816524/1‑103                                                                                                                                                              GCGGGCGCGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGTCGCCTGCTTCGCGGGCTTGCCCGCTCCCACAGTTTCCGTGCCAGCCTCTGGATCATGAGCCTGACACAGGTGGCTACGCGGCCTTTCGCCGGTTTGCCCCCAA      <  1:1642326/150‑1                                                                                                                                                                GGGCGCGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGTCGCCTGCTTCGCGGGCTTGCCCGCTCCCACAGTTTCCGTGCCAGCCTCTGGATCATGAGCCTGACACAGGTGGCTACGCGGCCTTTCGCCGGTTTGCCCCCAACA    <  1:1287630/150‑1                                                                                                                                                                  GCGCGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGTCGCCTGCTTCGCGGGCTTGCCCGCTCCCACAGTTTCCGTGCCAGCCTCTGGATCGTGGGCCTGACACAGGTTGGTACGCGGCCTTTCGCCGGTTTGCCCCCAACAGG  >  2:120141/1‑150                                                                                                                                                                  GCGCGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGTCGCCTGCTTCGCGGGCTTGCCCGCTCCCACAGTTTCCGTGCCAGCCTCTGGATCATGAGCCTGACACAGGTGGCTACGCGGCCTTTCGCCGGTTTGCCCCCAACAGG  >  2:452636/1‑150                                                                                                                                                                                                                                                                                                                         ATGGCCCAGCACCCGCGGTATGTCGAGACCACCCTGGTGACCATCGCCTATGATGCCGGCCTCTGGTACCAGGACCTGTTGGGGGCAAACCGGCGAAAGGCCGCGTAGCCACCTGTGTCAGGCTCATGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1273108‑1273270 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑actgtgggagcgggcGCGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGTCGCCTGCTTCGCGGGCTTGCCCGCTCCCACAGTTTCCGTGCCAGCCTCTGGATCATGAGCCTGACACAGGTGGCTACGCGGCCTTTCGCCGGTTTGCCCCCAACAGG  <  NC_002947/1273329‑1273182

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.