| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1311725 | 44 (0.590) | 6 (0.090) | 6/228 | NT | 11.1% | intergenic (‑187/+91) | PP_1144/rapA | membrane protein/RNA polymerase‑associated protein RapA |
| ? | NC_002947 | = 1311784 | 57 (0.850) | intergenic (‑246/+32) | PP_1144/rapA | membrane protein/RNA polymerase‑associated protein RapA | |||||
TCTGCGCTACAACCCTGTGCAGACTGTCCAGAGGCAGTATAGGAAGGAGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1311568‑1311725‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtgggagcgggcACGCCCGCGAACACCGGCAAAGCCGGTGGCATCCACCGCAGTGGATGCTTCGCGGGCTCGCCCGCTCCCACAGGAAGGCATTAGGGCCCCAAATTTATTCCTCACTGCGATTGGAGTTATAACCAAATCGTAGAAATCATTGT < NC_002947/1311784‑1311642 TCTGCGCTACAACCCTGTGCAGACTGTCCAGAGGCAGTATAGGAAGGAGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTG < 1:200639/149‑1TCTGCGCTACAACCCTGTGCAGACTGTCCAGAGGCAGTATAGGAAGGAGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTG > 2:200639/1‑149 TGCGCTACAACCCTGTGCAGACTGTCCAGAGGCAGTATAGGAAGGAGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGA > 1:760251/1‑150 GAGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCACGCCCGCGAACACCGGCAAAGCCGGTGGCATCCACCG > 2:1394989/1‑150 TGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAAGTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCACGCCCGCGAACACCGGCAAAGCCGGTGGCATCCACCGCAGTGGATGCTTCGCGG < 2:419289/150‑1 TAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCACGCCCGCGAACACCGGCAAAGCCGGTGGCATCCACCGCAGTGGATGCTTCGCGGGCTC < 1:1394989/150‑1 ATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCACGCCCGCGAACACCGGCAAAGCCGGTGGCATCCACCGCAGTGGATGCTTCGCGGGCTCGC < 1:132999/150‑1 TAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAACACCGGCAAAGCCGGTGGCATCCACCGCAGTGGATGCTTC > 1:1038783/1‑89 TAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAACACCGGCAAAGCCGGTGGCATCCACCGCAGTGGATGCTTC < 2:1038783/89‑1 GGGAGCGGGCACGCCCGCGAACACCGGCAAAGCCGGTGGCATCCACCGCAGTGGATGCTTCGCGGGCTCGCCCGCTCCCACAGGAAGGCATTAGGGCCCCAAATTTATTCCTCACTGCGATTGGAGTTATAACCAAATCGTAGAAATCAT > 2:656525/1‑150 GGAGCGGGCACGCCCGCGAACACCGGCAAAGCCGGTGGCATCCACCGCAGTGGATGCTTCGCGGGCTCGCCCGCTCCCACAGGAAGGCATTAGGGCCCCAAATTTATTCCTCACTGCGATTGGAGTTATAACCAAATCGTAGAAATCATT < 2:1166906/150‑1 gGCGGGCACGCCCGCGAACACCGGCAAAGCCGGTGGCATCCACCGCAGTGGATGCTTCGCGGGCTCGCCCGCTCCCACAGGAAGGCATTAGGGCCCCAAATTTATTCCTCACTGCGATTGGAGTTATAACCAAATCGTAGAAATCATTGT < 2:714227/149‑1 AGCGGGCACGCCCGCGAACACCGGCAAAGCCGGTGGCATCCACCGCAGTGGATGCTTCGCGGGCTCGCCCGCTCCCACAGGAAGGCATTAGGGCCCCAAATTTATTCCTCACTGCGATTGGAGTTATAACCAAATCGTAGAAATCATTGT < 1:60205/150‑1 AGCGGGCACGCCCGCGAACACCGGCAAAGCCGGTGGCATCCACCGCAGTGGATGCTTCGCGGGCTCGCCCGCTCCCACAGGAAGGCATTAGGGCCCCAAATTTATTCCTCACTGCGATTGGAGTTATAACCAAATCGTAGAAATCATTGT < 2:805788/150‑1 TCTGCGCTACAACCCTGTGCAGACTGTCCAGAGGCAGTATAGGAAGGAGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1311568‑1311725‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtgggagcgggcACGCCCGCGAACACCGGCAAAGCCGGTGGCATCCACCGCAGTGGATGCTTCGCGGGCTCGCCCGCTCCCACAGGAAGGCATTAGGGCCCCAAATTTATTCCTCACTGCGATTGGAGTTATAACCAAATCGTAGAAATCATTGT < NC_002947/1311784‑1311642 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |