New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1419584	14 (0.190)	7 (0.130)	7/190	NT	43.1%	intergenic (‑67/+70)	PP_1242/PP_1244	hypothetical protein/hypothetical protein
	?	NC_002947	= 1419614	8 (0.140)					intergenic (‑97/+40)	PP_1242/PP_1244	hypothetical protein/hypothetical protein

CCTGGCAGGGGATGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1419406‑1419584 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcctcttcgcgggcacgcccgctcccacaggGTCACCACAGCCGTCACGCACTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCAGCCCAGGCAACCCAGAATCCAGGGAAACAAAACAATGCCCACCGACAACACAACAGAACCCACCACAGTCGGCAAGACCTGCTTCT  <  NC_002947/1419614‑1419466                                                                                                                                                                                                                                                                                                                                          CCTGGCAGGGGATGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCAGGC                                                                                                                                                                                    <  1:1633862/150‑1  CTGGCAGGGGATGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCC                                                                                                                                                                                   >  1:1609720/1‑150  CTGGCAGGGGATGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGC                                                                                                                                                                                    >  1:525227/1‑149  CTGGCAGGGGATGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGC                                                                                                                                                                                    <  2:525227/149‑1  CTGGCAGGGGATGCCGGGTTCGATGCGGAACAGCGGGTGAGTGGTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCC                                                                                                                                                                                   >  1:89006/1‑150   TGGCAGGGGATGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCT                                                                                                                                                                                  >  1:904359/1‑150   TGGCAGGGGATGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTGGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCT                                                                                                                                                                                  >  1:376029/1‑150         GGGATGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGC                                                                                                                                                                            <  2:1242657/150‑1          GGATGCCGGGTTCGATACGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCG                                                                                                                                                                           >  2:1170377/1‑150           GATGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGG                                                                                                                                                                          <  1:542776/150‑1              GCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCA                                                                                                                                                                       >  1:492807/1‑150                CGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAATCGGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTTTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACG                                                                                                                                                                     >  2:741488/1‑150                 GGGTTCGATGCGGAACAGCGGGTGAGCGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGC                                                                                                                                                                    <  1:2136/150‑1                     TCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCTCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGC                                                                                                                                                                <  2:1474146/150‑1                        ATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCC                                                                                                                                                             >  2:728172/1‑150                          GCGGAACAGCGGGTGCGTGTGGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCA                                                                                                                                                           >  2:78260/1‑150                            GGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACA                                                                                                                                                         <  2:492807/150‑1                                      GTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGC                                                                                                                                                                            >  1:1829206/1‑121                                      GTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGC                                                                                                                                                                            <  2:1829206/121‑1                                           TGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTG                                                                                                                                                                                      >  1:1276646/1‑106                                           TGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTG                                                                                                                                                                                      <  2:1276646/106‑1                                                  TTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCC                                                                                                                                                            <  2:1760707/125‑1                                                  TTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCC                                                                                                                                                            >  1:1760707/1‑125                                                        TTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGTCACCACAGCCGTCACGCACTGCAC                                                                                                                             >  2:169926/1‑150                                                                  CAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGTCACCACAGCCGTCACGCACTGCACAGTACCTGTG                                                                                                                   <  1:169926/150‑1                                                                     GTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGTCACCACAGCCGTCACGCACTGCACAGTACCTGTGGGA                                                                                                                <  2:904359/150‑1                                                                       CTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCACAGGATGCTGGGTGGCCTTGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGTCACCACAGCCGTCACGCACTGCACAGTACCTGTGGGAGC                                                                                                              <  1:1170377/150‑1                                                                         TGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGTCACCACAGCCGTCACGCACTGCACAGTACCTGTGGGAGCGG                                                                                                            <  2:376029/150‑1                                                                                                              CATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGTCACCACAGCCGTCACGCACTGCACAGTACCT                                                                                                                      >  1:408783/1‑103                                                                                                              CATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGTCACCACAGCCGTCACGCACTGCACAGTACCT                                                                                                                      <  2:408783/103‑1                                                                                                              CATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTG                                                                                                                                                                                      <  2:1234531/39‑1                                                                                                              CATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTG                                                                                                                                                                                      >  1:1234531/1‑39                                                                                                                                                             GCGGGCACGCCCGCTCCCACAGGGTCACCACAGCCGTCACGCACTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCAGCCCAGGCAACCCAGAATCCAGGGAAACAAAACAATGCCCACCGACAACACAACAGAACCCACC                        >  2:375070/1‑150                                                                                                                                                                GGCACGCCCGCTCCCACAGGGTCACCACAGCCGTCGCGCACTGCACAGTACCTGTGCGAGCGGGCGTGCCCGCCAAGAGGCCAGCCCAGGCAACCCAGAATCCAGGGAACCAAAACAATGCCCACCGACAACACAACAGAACCCCCCACA                     >  2:245638/1‑150                                                                                                                                                                 GCACGCCCGCTCCCACAGGGTCACCACAGCCGTCACGCACTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCAGCCCAGGCAACCCAGAATCCAGGGAAACAAAACAA                                                     <  1:1137149/117‑1                                                                                                                                                                 GCACGCCCGCTCCCACAGGGTCACCACAGCCGTCACGCACTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCAGCCCAGGCAACCCAGAATCCAGGGAAACAAAACAA                                                     >  2:1137149/1‑117                                                                                                                                                                   ACGCCCGCTCCCACAGGGTCACCACAGCCGTCACGCACTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCAGCCCAGGCAACCCAGAATCCAGGGAAACAAAACAATGCCCACCGACAACACAACAGAACCCA                          >  2:1064956/1‑142                                                                                                                                                                   ACGCCCGCTCCCACAGGGTCACCACAGCCGTCACGCACTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCAGCCCAGGCAACCCAGAATCCAGGGAAACAAAACAATGCCCACCGACAACACAACAGAACCCA                          <  1:1064956/142‑1                                                                                                                                                                       CCGCTCCCACAGGGTCACCACAGCCGTCACGCACTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCAGCCCAGGCAACCCAGAATCCAGGGAAACAAAACAATGCCCACCGACAACACAACAGAACCCACCACAGTCGGCA              >  2:1696676/1‑150                                                                                                                                                                       CCGCTCCCACAGGGTCACCACAGCCGTCACGCACTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCAGCCCAGGCAACCCAGAATCCAGGGAAACAAAACAATGCCCACCGACAACACAACAGAACCCACCACAGTCGGCA              >  2:89006/1‑150                                                                                                                                                                       CCGCTCCCACAGGGTCACCACAGCCGTCACGCACTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCAGCCCAGGCAACCCAGAATCCAGGGAAACAAAACAATGCCCACCGACAACACAACAGAACCCACCACAGTCGGCA              >  2:999906/1‑150                                                                                                                                                                             CCACAGGGTCACCACAGCCGTCACGCACTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCAGCCCAGGCAACCCAGAATCCAGGGAAACAAAACAATGCCCACCGACAACACAACAGAACCCACCACAGTCGGCAAGACCT        >  2:1326810/1‑150                                                                                                                                                                             CCACAGGGTCACCACAGCCGTCACGCACTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCAGCCCAGGCAACCCAGAATCCAGGGAAACAAAACAATGCCCACCGACAACACAACAGAACCCACCACAGTCGGCAAGACCT        >  1:78260/1‑150                                                                                                                                                                             CCACAGGGTCACCACAGCCGTCACGCACTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCAGCCCAGGCAACCCAGAATCCAGGGAAACAAAACAATGCCCACCGACAACACAACAGAACCCACCACAGTCGGCAAGACCT        >  1:1801746/1‑150                                                                                                                                                                               ACAGGGTCACCACAGCCGTCACGCACTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCAGCCCAGGCAACCCAGAATCCAG                                                                  <  1:890457/90‑1                                                                                                                                                                               ACAGGGTCACCACAGCCGTCACGCACTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCAGCCCAGGCAACCCAGAATCCAG                                                                  >  2:890457/1‑90                                                                                                                                                                                CAGGGTCACCACAGCCGTCACGCACTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCAGCCCAGGCAACCCAGAATCCAGGGAAACAAAACAATGCCCACCGACAACACAACAGAACCCACCACAGTCGGCAAGACCTGCT     <  1:375070/150‑1                                                                                                                                                                                   GGTCACCACAGCCGTCACGCACTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCAGCCCAGGCAACCCAGAATCCAGGGAAACAAAACAATGCCCACCGACAACACAACAGAACCCACCACAGTCGGCAAGACCTGCTTCT  >  2:1609720/1‑150                                                                                                                                                                                   GGTCACCACAGCCGTCACGCACTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCAGCCCAGGCAACCCAGAATCCAGGGAAACAAAACAATGCCCACCGACAACACAACAGAACCCACCACAGTCGGCAAGACCTGCTTCT  <  1:1696676/150‑1                                                                                                                                                                                                                                                                                                                                          CCTGGCAGGGGATGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1419406‑1419584 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcctcttcgcgggcacgcccgctcccacaggGTCACCACAGCCGTCACGCACTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCAGCCCAGGCAACCCAGAATCCAGGGAAACAAAACAATGCCCACCGACAACACAACAGAACCCACCACAGTCGGCAAGACCTGCTTCT  <  NC_002947/1419614‑1419466

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.