New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1425720	52 (0.700)	3 (0.040)	3/246	NT	6.0%	intergenic (+115/‑390)	PP_1249/PP_1250	DUF4223 domain‑containing protein/group II intron‑encoding maturase
	?	NC_002947	= 1425741	44 (0.610)					intergenic (+136/‑369)	PP_1249/PP_1250	DUF4223 domain‑containing protein/group II intron‑encoding maturase

CTTGGCGGTACCCTGATCGCGACGCTTGCGGCGTGATCCAAGGCCCCCGGTCATGCACATGGCCGGGGGTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1425607‑1425720 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acccACTTGGCCACCACAACCAAGCGGGTTGCGCATACGCGCAACGCGCCATGCCTGGCGCACACAAAAACCCCCGGCCATGTGCATGACCGGGGGCCTTGGATCACGCCGCAAGCGTCGCGATCAGGGTACCGCCAAGATTACTGCTGCTG  <  NC_002947/1425741‑1425594                                                                                                                                                                                                                                                                        CTTGGCGGTACCCTGATCGCGACGCTTGCGGCGTGATCCAAGGCCCCCGGTCATGCACATGGCCGGGGGTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCACTTGGCCACCACAACCAAGCGGGTTGCGCATACGC                                                                                                                  <  1:1895072/150‑1                ATCGCGACGCTTGCGGCGTGATCCAAGGCCCCCGGTCATGCACATGGCCGGGGGTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCACTTGGCCACCACAACCAAGCGGGTTGCGCATAC                                                                                                                    >  1:1436479/1‑133                ATCGCGACGCTTGCGGCGTGATCCAAGGCCCCCGGTCATGCACATGGCCGGGGGTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCACTTGGCCACCACAACCAAGCGGGTTGCGCATAC                                                                                                                    <  2:1436479/133‑1                                                                                                               ACCCACTTGGCCACCACAACCAAGCGGGTTGCGCATACGCGCAACGCGCCATGCCTGGCGCACACAAAAACCCCCGGCCATGTGCATGACCGGGGGCCTTGGATCACGCCGCAAGCGTCGCGATCAGGGTACCGCCAAGATTACTGCTGC    >  2:171510/1‑150                                                                                                                 CCACTTGGCCACCACAACCAAGCGGGTTGCGCATACGCGCAACGCGCCATGCCTGGCGCACACAAAAACCCCCGGCCATGTGCATGACCGGGGGCCTTGGATCACGCCGCAAGCGTCGCGATCAGGGTACCGCCAAGATTACTGCTGCTG  >  1:309940/1‑150                                                                                                                 CCACTTGGCCACCACAACCAAGCGGGTTGCGCATACGCGCAACGCGCCATGCCTGGCGCACACAAAAACCCCCGGCCATGTGCATGACCGGGGGCCTTGGATCACGCCGCAAGCGTCGCGATCAGGGTACCGCCAAGATTACTGCTGCTG  >  1:315940/1‑150                                                                                                                 CCACTTGGCCACCACAACCAAGCGGGTTGCGCATACGCGCAACGCGCCATGCCTGGCGCACACAAAAACCCCCGGCCATGTGCATGACCGGGGGCCTTGGATCACGCCGCAAGCGTCGCGATCAG                           >  1:380423/1‑125                                                                                                                 CCACTTGGCCACCACAACCAAGCGGGTTGCGCATACGCGCAACGCGCCATGCCTGGCGCACACAAAAACCCCCGGCCATGTGCATGACCGGGGGCCTTGGATCACGCCGCAAGCGTCGCGATCAG                           <  2:380423/125‑1                                                                                                                 CCACTTGGCCACCACAACCAAGCGGGTTGCGCATACGCGCAACGCGCCATGCCTGGCGCACACAAAAACCCCCGGCCATGTGCATGACCGGGGGCCTTGGATCACGCCGAAAGCACCGCGATCAGGGTACCGCCAAGATTACTGCTGCTG  >  2:627344/1‑150                                                                                                                                                                                                                                                                        CTTGGCGGTACCCTGATCGCGACGCTTGCGGCGTGATCCAAGGCCCCCGGTCATGCACATGGCCGGGGGTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1425607‑1425720 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acccACTTGGCCACCACAACCAAGCGGGTTGCGCATACGCGCAACGCGCCATGCCTGGCGCACACAAAAACCCCCGGCCATGTGCATGACCGGGGGCCTTGGATCACGCCGCAAGCGTCGCGATCAGGGTACCGCCAAGATTACTGCTGCTG  <  NC_002947/1425741‑1425594

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.