| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1499465 | 32 (0.430) | 8 (0.130) | 6/208 | NT | 20.2% | intergenic (+35/‑131) | trpS/zapE | tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein |
| ? | NC_002947 | = 1499502 | 37 (0.610) | intergenic (+72/‑94) | trpS/zapE | tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein | |||||
CCGCATCGAAGGCCTGAGCTTCGGCCTGTGGCTCAATGGCGAGCAGGTTGCCGACGGGCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1499295‑1499465‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgggagcgggcgtgcccgcgaaCACCGGCAAAGCCGGTGCCATGCACCGCGGCGCCTGTTTCGCGGGCACGCCCGCTCCCACCGTTTGGCAGCCTCAGTCCTGCTGTGGTGCCAAGGCTTCGTTCAGGCTCTGAATGGCCGCATCACGGGCTTCAGCGTTGTCGAACTGC < NC_002947/1499502‑1499355 CCGCATCGAAGGCCTGAGCTTCGGCCTGTGGCTCAATGGCGAGCAGGTTGCCGACGGGCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGT < 2:1430969/150‑1CCGCATCGAAGGCCTGAGCTTCGGCCTGTGGCTCAATGGCGAGCAGGTTGCCGACGGGCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGT < 1:1143608/150‑1 CGCATCGAAGGCCTGAGCTTCGGCCTGTGGCTCAATGGCGAGCAGGTTGCCGACGGGCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTG < 1:675058/150‑1 GAGCAGGTTGCCGACGGGCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAACACCGGCAAAGCCGGTGCC > 1:462415/1‑150 TCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTTGGAGCGGGCGTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCGGCGCCTGTTTCGCGG < 1:1245083/150‑1 TCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCGGCGCCTGTTTCGCGG < 2:462415/150‑1 CGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTAAATGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCGGCGCCTGTTTCGCGGG < 1:1451176/150‑1 TGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCGGCGCCTGTTTCGCG > 1:883050/1‑110 TGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCGGCGCCTGTTTCGCG < 2:883050/110‑1 CGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCGGCGCCTGTTTCGCGGG < 1:982820/108‑1 CGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCGGCGCCTGTTTCGCGGG > 2:982820/1‑108 GTGGGAGCGGGCGTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCGGCGCCTGTTTCGCGGGCACGCCCGCTCCCACCGTTTGGCAGCCTCAGTCCTGCTGTGGTGCCAAGGCTTCGTTCAGGCTCTGAATGGCCGCATCACGG < 2:1907482/150‑1 GGGAGCGGGCGTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCGGCGCCTGTTTCGCGGGCACGCCCGCTCCCACCGTTTGGCAGCCTCAGTCCTGCTGTGGTGCCAAGGCTTCGTTCAGGCTCTGAATGGCCGCATCACGGGC > 2:110886/1‑150 GGCGTGCCCGCGAACACCGGCAAAGCCGGTGGCATGCACCGCGGCGCCTGTTTCGCGGGCACGCCCGCTCCCACCGTTTGGCAGCCTCAGTCCTGCTGTGGTGCCAA < 2:1313724/107‑1 GGCGTGCCCGCGAACACCGGCAAAGCCGGTGGCATGCACCGCGGCGCCTGTTTCGCGGGCACGCCCGCTCCCACCGTTTGGCAGCCTCAGTCCTGCTGTGGTGCCAA > 1:1313724/1‑107 GTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCGGCGCCTGTTTCGCGGGCACGCCCGCTCCCACCGTTTGGCAGCCTCAGTCCTGCTGTGGTGCCAAGGCTTCGTTCAGGCTCTGAATGGCCGCATCACGGGCTTCAGCGTTG < 1:352971/150‑1 CCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCGGCGCCTGTTTCGCGGGCACGCCCGCTCCCACCGTTTGGCAGCCTCAGTCCTGCTGTGGTGCCAAGGCTTCGTTCAGGCTCTGAATGGCCGCATCACGGGCTTCAGCGTTGTCGA > 1:1836687/1‑150 CCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCGGCGCCTGTTTCGCGGGCACGCCCGCTCCCACCGTTTGGCAGCCTCAGTCCTGCTGTGGTGCCAAGGCTTCGTTCAGGCTCTGAATGGCC < 1:1921910/125‑1 CCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCGGCGCCTGTTTCGCGGGCACGCCCGCTCCCACCGTTTGGCAGCCTCAGTCCTGCTGTGGTGCCAAGGCTTCGTTCAGGCTCTGAATGGCC > 2:1921910/1‑125 CCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCGGCGCCTGTTTCGCGGGCACGCCCGCTCCCACCGTTTGGCAGCCTCAGTCCTGCTGTGGTGCCAAGGCTTCGTTCAGG < 2:1625712/113‑1 CCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCGGCGCCTGTTTCGCGGGCACGCCCGCTCCCACCGTTTGGCAGCCTCAGTCCTGCTGTGGTGCCAAGGCTTCGTTCAGG > 1:1625712/1‑113 cCGAACACCGGCAAAGCCGGTGCCATGCACCGCGGCGCCTGTTTCGCGGGCACGCCCGCTCCCACCGTTTGGCAGCCTCAGTCCTGCTGTGGTGCCAAGGCTTCGTTCAGGCTCTGAATGGCCGCATCACGGGCCTCAGCGTTGTCGAAC < 1:643979/149‑1 GAACACCGGCAAAGCCGGTGCCATGCACCGCGGCGCCTGTTTCGCGGGCACGCCCGCTCCCACCGTTTGGCAGCCTCAGTCCTGCT < 1:746923/86‑1 GAACACCGGCAAAGCCGGTGCCATGCACCGCGGCGCCTGTTTCGCGGGCACGCCCGCTCCCACCGTTTGGCAGCCTCAGTCCTGCT > 2:746923/1‑86 AACACCGGCAAAGCCGGTGCCATGCACCGCGGCGCCTGTTTCGCGGGCACGCCCGCTCCCACCGTTTGGCAGCCTCAGTCCTGCTGTGGTGCCAAGGCTTCGTTCAGGCTCTGAATGGCCGCATCACGGGCTTCAGCGTTGTCGAACTGC > 2:1493575/1‑150 CCGCATCGAAGGCCTGAGCTTCGGCCTGTGGCTCAATGGCGAGCAGGTTGCCGACGGGCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1499295‑1499465‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgggagcgggcgtgcccgcgaaCACCGGCAAAGCCGGTGCCATGCACCGCGGCGCCTGTTTCGCGGGCACGCCCGCTCCCACCGTTTGGCAGCCTCAGTCCTGCTGTGGTGCCAAGGCTTCGTTCAGGCTCTGAATGGCCGCATCACGGGCTTCAGCGTTGTCGAACTGC < NC_002947/1499502‑1499355 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |