| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1781313 = | 62 (0.830) | 6 (0.080) | 4/244 | NT | 9.4% | coding (73/1197 nt) | dapC | N‑succinyl‑L,L‑diaminopimelate aminotransferase |
| ? | NC_002947 | 1781342 = | 56 (0.780) | coding (44/1197 nt) | dapC | N‑succinyl‑L,L‑diaminopimelate aminotransferase | |||||
TGCAGGCCGGCCAAGGTAGCGACACCAGCCAGACCCGCGTGACCTTTTAACGATTAGACGATTGACGAGACCTTGCGCCGATGAACCATGCCTTGACCCAGCTTCAGCCCTATCCGTTCGAAAAGCTTCGCGCCCTGCTGGGCAGCGTGAAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1781465‑1781313‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaagcTTTTCGAACGGATAGGGCTGAAGCTGGGTCAAGGCATGGTTCATCGGCGCAAGGTCTCGTCAATCGTCTAATCGTTAAAAGG > NC_002947/1781342‑1781423 TGCAGGCCGGCCAAGGTAGCGACACCAGCCAGACCCGCGTGACCTTTTAACGATTAGACGATTGACGAGACCTTGCGCCGATGAACCATGCCTTGACCCAGCTTCAGCCCTATCCGTTCGAAAAGCTTCGCGCCCTGCTGGGCAGCGTGA > 2:718106/1‑150 GCAGGCCGGCCAAGGTAGCGACACCAGCCAGACCCGCGTGACCTTTTAACGATTAGACGATTGACGAGACCTTGCGCCGATGAACCATGCCTTGACCCAGCTTCAGCCCTATCCGTTCGAAAAGCTTCGCGCCCTGCTGGGCAGCGTGAA < 1:945563/150‑1 GCAGGCAGGCCAAGGTAGCGACACCAGCCAGACCCGCGTGACCTTTTAACGATTAGACGATTGACGAGACCTTGCGCCGATGAACCATGCCTTGACCCAGCTTCAGCCCTATCCGTTCGAAAAGCTTCGCGCCCTGCTGGGCAGCGTGAA < 1:397442/150‑1 CAGGCCGGCCAAGGTAGCGACACCAGCCAGACCCGCGTGACCTTTTAACGATTAGACGATTGACGAGACCTTGCGCCGATGAACCATGCCTTGACCCAGCTTCAGCCCTATCCGTTCGAGCGCGTTCGCGCCCTGCTGGGCAGCGTGAAG < 1:49905/150‑1 CCAGCCAGACCCGCGTGACCTTTTAACGATTAGACGATTGACGAGACCTTGCGCCGATGAACCATGCCTTGACCCAGCTTCAGCCCTATCCGTTCGAAAAGCTTCGCGCCCTGCTGGGCAGCGTGAA < 1:221084/127‑1 CCAGCCAGACCCGCGTGACCTTTTAACGATTAGACGATTGACGAGACCTTGCGCCGATGAACCATGCCTTGACCCAGCTTCAGCCCTATCCGTTCGAAAAGCTTCGCGCCCTGCTGGGCAGCGTGAA > 2:221084/1‑127 TCCGTTCGAAAAGCTTCGCGCCCTGCTGGGCAGCGTGAAGCTTTTCGAACGGATAGGGCTGAAGCTGGGTCAAGGCATGGTTCATCGGCGTAAGGTCTCGTCAATCGTCTAATC < 2:945840/114‑1 TCCGTTCGAAAAGCTTCGCGCCCTGCTGGGCAGCGTGAAGCTTTTCGAACGGATAGGGCTGAAGCTGGGTCAAGGCATGGTTCATCGGCGCAAGGTCTCGTCAATCGTCTAATC > 1:945840/1‑114 TCCGTTCGAAAAGCTTCGCGCCCTGCTGGGCAGCGTGAAGCTTTTCGAACGGATAGGGCTGAAGCTGGGTCAAGGCATGGTTCATCGGCGCAAGGTCTCGTCAATCGTCTAATC > 1:946187/1‑114 TCCGTTCGAAAAGCTTCGCGCCCTGCTGGGCAGCGTGAAGCTTTTCGAACGGATAGGGCTGAAGCTGGGTCAAGGCATGGTTCATCGGCGCAAGGTCTCGTCAATCGTCTAATC < 2:946187/114‑1 CTTCGCGCCCTGCTGGGCAGCGTGAAGCTTTTCGAACGGATAGGGCTGAAGCTGGGTCAATGCATGGTTCATCGGCGCAAGGTCTCGTCAATCGTCTAATCGTTAAAAGG < 1:526923/110‑1 CTTCGCGCCCTGCTGGGCAGCGTGAAGCTTTTCGAACGGATAGGGCTGAAGCTGGGTCAAGGCATGGTTCATCGGCGCAAGGTCTCGTCAATCGTCTAATCGTTAAAAGG > 2:526923/1‑110 TGCAGGCCGGCCAAGGTAGCGACACCAGCCAGACCCGCGTGACCTTTTAACGATTAGACGATTGACGAGACCTTGCGCCGATGAACCATGCCTTGACCCAGCTTCAGCCCTATCCGTTCGAAAAGCTTCGCGCCCTGCTGGGCAGCGTGAAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1781465‑1781313‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaagcTTTTCGAACGGATAGGGCTGAAGCTGGGTCAAGGCATGGTTCATCGGCGCAAGGTCTCGTCAATCGTCTAATCGTTAAAAGG > NC_002947/1781342‑1781423 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |