New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1947818 =	65 (0.870)	4 (0.070)	4/202	NT	6.9%	intergenic (‑36/+134)	PP_1748/PP_1749	hypothetical protein/acetyltransferase
	?	NC_002947	1947937 =	56 (0.940)					intergenic (‑155/+15)	PP_1748/PP_1749	hypothetical protein/acetyltransferase

TATCGACCTGCTGTTTCCCCATAGCCGGCCGTTGGCCTGACAACTGCTCGGCTTTTTGTGGGAGCGGCCTTGTGTCGCGAATGGGGTGCGAAGCGCCCCTAGGGTCTCAGCTTCGCTGCCGATATTGCCGGGGCCGCTTTGCGGCCCTTTCGCGACACAAGGCCGCTCCCACAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1947991‑1947818 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgacacaaggccgctcccacaaAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAACGCTCGGCGGTGGGCTGCGGTTCATGGTTGGCCAGGCCAGCACGTTCGTTGGCCTCGATGATCACGTACTCCGGCTGCCCGGCATCACGC  >  NC_002947/1947937‑1948084                                                                                                                                                                                                                                                                                                                                    TATCGACCTGCTGTTTCCCCATAGCCGGCCGTTGGCCTGACAACTGCTCGGCTTTTTGTGGGAGCGGCCTTGTGTCGCGAATGGGGTGCGAAGCGCCCCTAGGGTCTCAGCTTCGCTGCCGATATTGCCGGGGCCGCTTTGCGGCCCTTT                                                                                                                                                                              >  1:354599/1‑150    CGACCTGCTGTTTCCCCATAGCCGGCCGTTGGCCTGACAACTGCTCGGCTTTTTGTGGGAGCGGCCTTGTGTCGCGAATGGGGTGCGAAGCGCCCCTAGGGTCTCAGCTTCGCTGCCGATATTGCCGGGGCCGCTTTGCGGCCCTTTCGC                                                                                                                                                                           <  1:1640745/150‑1    CGACCTGCTGTTTCCCCATAGCCGGCCGTTGGCCTGACAACTGCTCGGCTTTTTGTGGGAGCGGCCTTGTGTCGCGAATGGGGTGCGAAGCGCCCCTAGGGTCTCAGCTTCGCTGCCGATATTGCCGGGGCCGCTTTGCGGCCCTTTCGC                                                                                                                                                                           <  1:1666947/150‑1      ACCTGCTGTTTCCCCATAGCCGGCCGTTGGCCTGACAACTGCTCGGCTTTTTGTGGGAGCGGCCTTGTGTCGCGAATGGGGTGCGAAGCGCCCCTAGGGTCTCAGCTTCGCTGCCGATATTGCCGGGGCCGCTTTGCGGCCCTTTCGCGA                                                                                                                                                                         >  2:659223/1‑150           CTGTTTCCCCATAGCCGGCCGTTGGCCTGACAACTGCTCGGCTTTTTGTGGGAGCGGCCTTGTGTCGCGAATGGGGTGCGAAGCGCCCCTAGGGTCTCAGCTTCGCTGCCGATATTGCCGGGGCCGCTTTGCGGCCCTTTCGCGACACAA                                                                                                                                                                    >  1:1410103/1‑150            TGTTTCCCCATAGCCGGCCGTTGGCCTGACAACTGCTCGGCTTTTTGTGGGAGCGGCCTTGTGTCGCGAATGGGGTGCGCTGGATCCCTAGGGTCTCAGCTTCGCTGCCGCTATTGCCGGGGGCGGTTTGCGGCCCTTTCGCGACAAAAG                                                                                                                                                                   >  1:1861579/1‑150                     ATAGCCGGCCGTTGGCCTGACAACTGCTCGGCTTTTTGTGGGAGCGGCCTTGTGTCGCGAATGGGGTGCGAGGCGCCCCTAGGGTCTCAGCTTCGCTGCCGATATTGCCGGGGCCGCTTTGCGGCCCTTTCGCGACACAAGGCCGCTCCC                                                                                                                                                          <  2:1869529/150‑1                         CCGGCCGTTGGCCTGACAACTGCTCGGCTTTTTGTGGGAGCGGCCTTGTGTCGCGAATGGGGTGCGTAGCGCCCCTAGGGTCTCAGCTTCGCTGCCGATATTGCCGGGGCTGCTTTGCGGCCCTTTCGCGACACAAGGCCGCTCCCACAA                                                                                                                                                      <  1:1089091/150‑1                         CCGGCCGTTGGCCTGACAACTGCTCGGCTTTTTGTGGGAGCGGCCTTGTGTCGCGAATGGGGTGCGAAGCGCCCCTAGGGTCTCAGCTTCGCTGCCGATATTGCCGGGGCCGCTTTGCGGCCCTTTCGCGACACAAGGCCGCTCCCACAA                                                                                                                                                      <  2:1176844/150‑1                                                                             GCGAATGGGGTGCGAAGCGCCCCTAGGGTCTCAGCTTCGCTGCCGATATTGCCGGGGCCGCTTTGCGGCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGC                                                                                                        >  2:843685/1‑144                                                                             GCGAATGGGGTGCGAAGCGCCCCTAGGGTCTCAGCTTCGCTGCCGATATTGCCGGGGCCGCTTTGCGGCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGC                                                                                                        <  1:843685/144‑1                                                                                AATGGGGTGCGAAGCGCCCCTAGGGTCTCAGCTTCGCTGCCGATATTGCCGGGGCCGCTTTGCGGCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATA                                                                                               >  1:189043/1‑150                                                                                                                        CGATATTGCCGGGGCCGCTTTGCGGCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAACGCTCGGCGGTGGGCTGCGGTTCATGGTTGGCCAGGC                                                       <  2:1572312/150‑1                                                                                                                                                       CGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAACGCTCGGCGGTGGGCTGCGGTTCATGGTTGGCCAGGCCAGCACGTTCGTTGGCCTCGATGATCACGTA                        <  1:408623/150‑1                                                                                                                                                           ACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAACGCTCGGCGGTGGGCTGCGGTTCATGGTTGGCCAGGCCAGCACGTTCGTTGGCCTCGATGATCACGTACTCC                    >  1:1042341/1‑150                                                                                                                                                           ACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAACGCTCGGCGGTGGGCTGCGGTTCATGGTTGGCCAGGCCAGCACGTTCGTTGGCCTCGATGATCACGTACTCC                    <  2:1753291/150‑1                                                                                                                                                            CACGAGGCCGCCCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCGATGGGGAAACAGCAGGTCGATAAAACGCTCGGCGGTGGGCTGCGGTTCATGGTTGGCCAGGCCAGCACGTTCGTTGGCCTCGATGATCACGTACTCCG                   <  2:1835286/150‑1                                                                                                                                                            CACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAACGCTCGGCGGTGGGCTGCGGTTCATGGTTGGCCAGGCCAGCACGTTCGTTGGCCTCGATGATCACGTACTCCG                   <  1:1747603/150‑1                                                                                                                                                                  GCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAACGCTCGGCGGTGGGCTGCGGTTCATGGTTGGCCAGGCCAGCACGTTCGTTGGCCTCGATGATCACGTACTCCGGCTGCC             >  1:254215/1‑150                                                                                                                                                                          CACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAACGCTCGGCGGTGGGCTGCGGTTCATGGTTGGCCAGGCCAGCACGTTCGTTGGCCTCGATGATCACGTACT                      <  1:645813/133‑1                                                                                                                                                                          CACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAACGCTCGGCGGTGGGCTGCGGTTCATGGTTGGCCAGGCCAGCACGTTCGTTGGCCTCGATGATCACGTACT                      >  2:645813/1‑133                                                                                                                                                                            CAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAACGCTCGGCGGTGGGCTGCGGTTCATGGTTGGCCAGGCCAGCACGTTCGTTGGCCTCGATGATCACGTACTCCGGCTGCCCGGCATCACG   >  1:1061796/1‑150                                                                                                                                                                             AAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAACGCTCGGCGGTGGGCTGCGGTTCATGGTTGGCCAGGCCAGCACGTTCGTTGGCCTCGATGATCACGTACTCCGGCTGCCCGGCATCACGC  >  2:1908275/1‑150                                                                                                                                                                                                                                                                                                                                    TATCGACCTGCTGTTTCCCCATAGCCGGCCGTTGGCCTGACAACTGCTCGGCTTTTTGTGGGAGCGGCCTTGTGTCGCGAATGGGGTGCGAAGCGCCCCTAGGGTCTCAGCTTCGCTGCCGATATTGCCGGGGCCGCTTTGCGGCCCTTTCGCGACACAAGGCCGCTCCCACAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1947991‑1947818 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgacacaaggccgctcccacaaAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAACGCTCGGCGGTGGGCTGCGGTTCATGGTTGGCCAGGCCAGCACGTTCGTTGGCCTCGATGATCACGTACTCCGGCTGCCCGGCATCACGC  >  NC_002947/1947937‑1948084

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.