| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2202527 | 62 (0.830) | 6 (0.090) | 6/240 | NT | 9.2% | coding (161/990 nt) | PP_1947 | hypothetical protein |
| ? | NC_002947 | = 2202533 | 60 (0.850) | coding (167/990 nt) | PP_1947 | hypothetical protein | |||||
ATCAAGATTTGGTTAAGGTGCTTGAAACGCCTTTGAAGTTAAATGCGAAATCAGGCGAGCAGATTTATATTATTACCGATACTGCGATGGAGCCCGAAGTCTGGCAGGCCCTCTCCCAAGCAGCGGTGAATCTTTCCATGGAACCCACGGTTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2202374‑2202527‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggttgc‑ATGATCGCAACCGTGGGTTCCATGGAAAGATTCACCGCTGCTTGGGAGAGGGCCTGCCAGACTTCGGGCTCCATCGCAGTATCGGTAATAATATAAATCTGCTCGCCTGATTTCGCATTTAACTTCAAAGGCGTTTCAAGCACCTTAA < NC_002947/2202533‑2202386 ATCAAGATTTGGTTAAGGTGCTTGAAACGCCTTTGAAGTTAAATGCGAAATCAGGCGAGCAGATTTATATTATTACCGATACTGCGATGGAGCCCGAAGTCTGGCAGGCCCTCTCCCAAGCAGCGGTGAATCTTTCCATGGAACCCACGG > 2:430604/1‑150 AGATTTGGTTAAGGTGCTTGAAACGCCTTTGAAGTTAAATGCGAAATCAGGCGAGCAGATTTATATTATTACCGATACTGCGATGGAGCCCGAAGTCTGGCAGGCCCTCTCCCAAGCAGCGGTGAATCTTTCCATGGAACCCACGGTTGC < 2:1391440/150‑1 GAAGTCTGGCAGGCCCTCTCCCAAGCAGCGGTGAATCTTTCCATGGAACCCACGGTTGC‑ATGATCGCAACCGTG > 1:1477365/1‑74 GAAGTCTGGCAGGCCCTCTCCCAAGCAGCGGTGAATCTTTCCATGGAACCCACGGTTGC‑ATGATCGCAACCGTG < 2:1477365/74‑1 TGGAACCCACGGTTGCGATCAT‑GCAACCGCGGGTTCCATGGAAAGATTCACCGCTGCTTGGGAGAGGGC > 1:455356/1‑69 TGGAACCCACGGTTGCGATCAT‑GCAACCGCGGGTTCCATGGAAAGATTCACCGCTGCTTGGGAGAGGGC < 2:455356/69‑1 AACCCACGGTTGCGATCAT‑GCAACCGTGGGTTCCATGGAAAGATTCACCGCTGCTTGGGAGAGGGCCTGCCAGACTTCGGG < 1:1689185/81‑1 AACCCACGGTTGCGATCAT‑GCAACCGTGGGTTCCATGGAAAGATTCACCGCTGCTTGGGAGAGGGCCTGCCAGACTTCGGG > 2:1689185/1‑81 CGGTTGC‑ATGATCGCAACCGTGGGTTCCATGGAAAGATTCACCGCTGCTTGGGAGAGGGCCTGCCAGACTTCGGGCTCCCTCGCAGTAGCTGCAGTAATATAAATCTGCTCTGCTGATTTCGCATTTAACTTCAAAGGCGTTTCAAGCAC < 1:840273/150‑1 GTTGC‑ATGATCGCAACCGTGGGTTCCATGGAAAGATTCACCGCTGCTTGGGAGAGGGC > 2:257721/1‑58 GTTGC‑ATGATCGCAACCGTGGGTTCCATGGAAAGAGTCACCGCTGCTTGGGAGAGGGC < 1:257721/58‑1 TTGC‑ATGATCGCAACCGTGGGTTCCATGGAAAGATTCACCGCTGCTTGGGAGAGGGCCTGCCAGACTTCGGGCTCCATCGCAGTATCGGTAATAATATAAATCTGCTCGCCTGATTTCGCATTTAACTTCAAAGGCGTTTCAAGCACCTT < 1:1313888/150‑1 GC‑ATGATCGCAACCGTGGGTTCCATGGAAAGATTCACCGCTGCTTGGGAGAGGGCCTGCCAGACTTCGGGCTCCATCGCAGTATCGGTAATAATATAAATCTGCTCGCCTGATTTCGCATTTAACTTCAAAGGCGTTTCAAGCACCTTAA < 1:1395658/150‑1 ATCAAGATTTGGTTAAGGTGCTTGAAACGCCTTTGAAGTTAAATGCGAAATCAGGCGAGCAGATTTATATTATTACCGATACTGCGATGGAGCCCGAAGTCTGGCAGGCCCTCTCCCAAGCAGCGGTGAATCTTTCCATGGAACCCACGGTTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2202374‑2202527‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggttgc‑ATGATCGCAACCGTGGGTTCCATGGAAAGATTCACCGCTGCTTGGGAGAGGGCCTGCCAGACTTCGGGCTCCATCGCAGTATCGGTAATAATATAAATCTGCTCGCCTGATTTCGCATTTAACTTCAAAGGCGTTTCAAGCACCTTAA < NC_002947/2202533‑2202386 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |