New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2494948	75 (1.010)	9 (0.120)	8/252	NT	12.0%	coding (114/618 nt)	PP_2188	tRNA 2‑methylthio‑N6‑isopentenyl adenosine(37) hydroxylase MiaE
	?	NC_002947	= 2494974	58 (0.780)					coding (140/618 nt)	PP_2188	tRNA 2‑methylthio‑N6‑isopentenyl adenosine(37) hydroxylase MiaE

TTGCACGCTTATGTCCCTGATCCCCGAAATCGACGCCTTTCTTGGCTGCCCGACGCCAGATGCCTGGATCGAAGCGGCGCTCGCCGACCAGGAAACCCTGCTGATCGACCACAAGAACTGCGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2494825‑2494948 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gCTCAAGGCCGTGCTGGCGGCCTTGAACTCGCAGTTC  <  NC_002947/2494974‑2494939                                                                                                                                                                  TTGCACGCTTATGTCCCTGATCCCCGAAATCGACGCCTTTCTTGGCTGCCCGACGCCAGATGCCTGGATCGAAGCGGCGCTCGCCGACCAGGAAACCCTGCTGATCGACCACAAGAACTGCGAGTTCAAGGCCGTGCTGGCGGCCTTGAA            <  1:1349572/150‑1                                    CCTTTCTTGGCTGCCCGACGCCAGATGCCTGGATCGAAGCGGCGCTCGCCGACCAGGAAACCCTGCTGATCGACCACAAGAACTGCGAGCTCAAGGCCGTGCTGGCGGCCTTGAACTCGCAGTTC  <  1:827363/125‑1                                    CCTTTCTTGGCTGCCCGACGCCAGATGCCTGGATCGAAGCGGCGCTCGCCGACCAGGAAACCCTGCTGATCGACCACAAGAACTGCGAGCTCAAGGCCGTGCTGGCGGCCTTGAACTCGCAGTTC  >  2:827363/1‑125                                      TTTCTTGGCTGCCCGACGCCAGATGCCTGGATCGAAGCGGCGCTCGCCGACCAGGAAACCCTGCTGATCGACCACAAGAACTGCGAGTTCAAGGCCGTGCTGGCGGCCTTG              <  1:1561759/111‑1                                      TTTCTTGGCTGCCCGACGCCAGATGCCTGGATCGAAGCGGCGCTCGCCGACCAGGAAACCCTGCTGATCGACCACAAGAACTGCGAGTTCAAGGCCGTGCTGGCGGCCTTG              >  2:1561759/1‑111                                      TTTCTTGGCTGCCCGACGCCAGATGCCTGGATCGAAGCGGCGCTCGCCGACCAGGAAACCCTGCTGATCGACCACAAGAACTGCGAGCTCAAGGCCGTGCTGGCGGCCTTGAACTCGCA      <  1:1020905/119‑1                                      TTTCTTGGCTGCCCGACGCCAGATGCCTGGATCGAAGCGGCGCTCGCCGACCAGGAAACCCTGCTGATCGACCACAAGAACTGCGAGCTCAAGGCCGTGCTGGCGGCCTTGAACTCGCA      >  2:1020905/1‑119                                                                CTGGATCGAAGCGGCGCTCGCCGACCAGGAAACCCTGCTGATCGACCACAAGAACTGCGAGCTCAAGGCCGTGCTGGCGGCCTTGAACTCGCAG     >  1:887133/1‑94                                                                CTGGATCGAAGCGGCGCTCGCCGACCAGGAAACCCTGCTGATCGACCACAAGAACTGCGAGCTCAAGGCCGTGCTGGCGGCCTTGAACTCGCAG     <  2:887133/94‑1                                                                                                                                                                  TTGCACGCTTATGTCCCTGATCCCCGAAATCGACGCCTTTCTTGGCTGCCCGACGCCAGATGCCTGGATCGAAGCGGCGCTCGCCGACCAGGAAACCCTGCTGATCGACCACAAGAACTGCGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2494825‑2494948 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gCTCAAGGCCGTGCTGGCGGCCTTGAACTCGCAGTTC  <  NC_002947/2494974‑2494939

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.