New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3188199	64 (0.860)	6 (0.090)	6/238	NT	9.1%	intergenic (+113/+149)	actP‑II/PP_2798	acetate permease/oxidoreductase
	?	NC_002947	= 3188210	60 (0.860)					intergenic (+124/+138)	actP‑II/PP_2798	acetate permease/oxidoreductase

TGGCCAGACCGGCCTTGGTGCCAGCGGTGCCGTCGATCATTGAGTTACCCGCGGCCGCAAGCGCAGGAGTGCCAGCGGCCGTGTGATAGCTCGCTAGTAACCTCTGAAGATCTCCCCGATGCTGGTAATCGGATGCCCCATGTGCTGCGCCGTCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3188044‑3188199 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgtcccTC‑GTCAACCGGGGGACGGCGCAGCACATGGGGCATCCGATTACCAGCATCGGGGAGATCTTCAGAGGTTACTAGCGAGCTATCACACGGCCGCTGGCACTCCTGCGCTTGCGGCCGCGGGTAACTCAATGATCGACGGCACCGCTGGCA  <  NC_002947/3188210‑3188062                                                                                                                                                                                                                                                                                                                    TGGCCAGACCGGCCTTGGTGCCAGCGGTGCCGTCGATCATTGAGTTACCCGCGGCCGCAAGCGCAGGAGTGCCAGCGGCCGTGTGATAGCTCGCTAGTAACCTCTGAAGATCTCCCCGATGCTGGTAATCGGATGCCCCATGTGCTGCGC                                                                                                                                                              <  1:659755/150‑1  GGCCAGACCGGCCTTGGTGCCAGCGGTGCCGTCGATCATTGAGTTACCCGCGGCCGCAAGCGCAGGAGTGCCAGCGGCCGTGTGATAGCTCGTTAGGAGCCTCTGAAGATCTCCCCGATGCTGGTAATCGGATGCCCCATGTGCTGCGCC                                                                                                                                                             <  2:1909816/150‑1     CAGACCGGCCTTGGTGCCAGCGGTGCCGTCGATCATTGAGTTACCCGCGGCCGCAAGCGCAGGAGTGCCAGCGGCCGTGTGATAGCTCGCTAGTAACCTCTGAAGATCTCCCCGATGCTGGTAATCGGATGCCCCATGTGCTGCGCCGTC                                                                                                                                                          <  2:861934/150‑1     CAGACCGGCCTTGGTGCCAGCGGTGCCGTCGATCATTGAGTTACCCGCGGCCGCAAGCGCAGGAGTGCCAGCGGCCGTGTGATAGCTCGCTAGTAACCTCTGAAGATCTCCCCGATGCTGGTAATCGGATGCCCCATGTGCTGCGCCGTC                                                                                                                                                          <  2:698909/150‑1     CAGACCGGCCTTGGTGCCAGCGGTGCCGTCGATCATTGAGTTACCCGCGGCCGCAAGCGCAGGAGTGCCAGCGGCCGTGTGATAGCTCGCTAGTAACCTCTGAAGATCTCCCCGATGCTGGTAATCGGATGCCCCATGTGCTGCGCCGTC                                                                                                                                                          >  1:318995/1‑150     CAGACCGGCCTTGGTGCCAGCGGTGCCGTCGATCATTGAGTTACCCGCGGCCGCAAGCGCAGGAGTGCCAGCGGCCGTGTGATAGCTCGCTAGTAACCTCTGAAGATCTCCCCGATGCTGGTAATCGGATGCCCCATGTGCTGCGCCGTC                                                                                                                                                          >  2:1332266/1‑150                                             TTACCCGCGGCCGCAAGCGCAGGAGTGCCAGCGGCCGTGTGATAGCTCGCTAGTAACCTCTGAAGATCTCCCCGATGCTGGTAATCGGATGCCCCATGTGCTGCGCCGTCCCTC‑GTCAACCGGGGGACGG                                                                                                                                     <  2:630454/130‑1                                             TTACCCGCGGCCGCAAGCGCAGGAGTGCCAGCGGCCGTGTGATAGCTCGCTAGTAACCTCTGAAGATCTCCCCGATGCTGGTAATCGGATGCCCCATGTGCTGCGCCGTCCCTC‑GTCAACCGGGGGACGG                                                                                                                                     >  1:630454/1‑130                                                                                                  TAACCTCTGAAGATCTCCCCGATGCTGGTAATCGGATGCCCCATGTGCTGCGCCGTCCCTC‑GTCAACCGGGGGACGGCGC                                                                                                                                  >  1:197639/1‑80                                                                                                  TAACCTCTGAAGATCTCCCCGATGCTGGTAATCGGATGCCCCATGTGCTGCGCCGTCCCTC‑GTCAACCGGGGGACGGCGC                                                                                                                                  <  2:197639/80‑1                                                                                                                                          CCATGTGCTGCGCCGTCCCCCGGTTGA‑CGAGGGACGGCGCAGCACATGGGGCATCCGATTACCAGCATCGGGGAGATCTTCAGAGGTTACTAGCGAGCTATCACACGGCCGCTGGCACTCCTGCGCTTGCG                                       >  2:744682/1‑131                                                                                                                                          CCATGTGCTGCGCCGTCCCCC‑GGTTGACGAGGGACGGCGCAGCACATGGGGCATCCGATTACCAGCATCGGGGAGATCTTCAGAGGTTACTAGCGAGCTATCACACGGCCGCTGGCACTCCTGCGCTTGCG                                       <  1:744682/131‑1                                                                                                                                                     GCCGTCCCTC‑GTCAACCGGGGGACGGCGCAGCACATGGGGCATCCGATTACCAGCATCGGGGAGATCTTCAGAGGTTACTAGCGAGCTATCACACGGCCGCTGGCACTCCTGCGCTTGCGGCCGCGGGTAACTCAATGATCGACGGCACC         >  1:1643450/1‑150                                                                                                                                                       CGTCCCTC‑GTCAACCGGGGGACGGCGCAGCACATGGGGCATCCGATTACCAGCATCGGGGAGATCTTCAGAGGTTACTAG                                                                             <  2:1294616/80‑1                                                                                                                                                       CGTCCCTC‑GTCAACCGGGGGACGGCGCAGCACATGGGGCATCCGATTACCAGCATCGGGGAGATCTTCAGAGGTTACTAG                                                                             >  1:1294616/1‑80                                                                                                                                                         TCCCTC‑GTCAACCGGGGGACGGCGCAGCACATGGGGCATCCGATTACCAGCATCGGGGAGATCTTCAGAGGTTACTAGCGAGCTATCACACGGCCGCTGGCACTCCTGCGCTTGCGGCCGCGGGTAACTCAATGATCGACGGCACCGCTG     <  2:1208088/150‑1                                                                                                                                                           CCTC‑GTCAACCGGGGGACGGCGCAGCACATGGGGCATCCGATTACCAGCATCGGGGAGATCTTCAGAGGTTACTAGCGAGCTATCACACGGCCGCTGGCACTCCTGCGCTTGCGGCCGCGGGTAACTCAATGATCGACGGCACCGCTGGC   >  2:1350066/1‑150                                                                                                                                                           CCTC‑GTCAACCGGGGGACGGCGCAGCACATGGGGCATCCGATTACCAGCATCGGGGAGATCTTCAGAGGTTACTAGCGAGCTATCACACGGCCGCTGGCACTCCTGCGCTTGCGGCCGCGG                                <  1:1219315/121‑1                                                                                                                                                           CCTC‑GTCAACCGGGGGACGGCGCAGCACATGGGGCATCCGATTACCAGCATCGGGGAGATCTTCAGAGGTTACTAGCGAGCTATCACACGGCCGCTGGCACTCCTGCGCTTGCGGCCGCGG                                >  2:1219315/1‑121                                                                                                                                                           CCTC‑GTCAACCGGGGGACGGCGCAGCACATGGGGCATCCGATTACCAGCATCGGGGAGATCTTCAGAGGTTACTAGCGAGCTATCACACGGCCGCTGGCACTCCTGCGCTTGCGGCCGAGAGTAACTCAATGATCGACGGCACCGCTGGC   >  2:1679252/1‑150                                                                                                                                                           CCTC‑GTCAACCGGGGGACGGCGCAGCACATGGGGCATCC                                                                                                                  >  2:1704954/1‑39                                                                                                                                                           CCTC‑GTCAACCGGGGGACGGCGCAGCACATGGGGCATCC                                                                                                                  <  1:1704954/39‑1                                                                                                                                                            CTC‑GTCAACCGGGGGACGGCGCAGCACATGGGGCATCCGATTACCAGCATCGGGGAGATCTTCAGAGGTTACTAGCGAGCTATCACACGGCCGCTGGCACTCCTGCGCTTGCGGCCGCGGGTAACTCAATGATCGACGGCACCGCTGGCA  >  2:1601530/1‑150                                                                                                                                                            CTC‑GTCAACCGGGGGACGGCGCAGCACATGGGGCATCCGATTACCAGCATCGGGGAGATCTTCAGAGGTTACTAGCGAGCTATCACACGGCCGCTGGCACTCCTGCGCTTGCGGCCGCGGGTAACTCAATGATCGACGGCACCGCTGGCA  >  2:318995/1‑150                                                                                                                                                            CTC‑GTCAACCGGGGGACGGCGCAGCACATGGGGCATCCGATTACCAGCATCGGGGAGATCTTCAGAGGTTACTAGCGAGCTATCACACGGCCGCTGGCACTCCTGCGCTTGCGGCCGCGGGTAACTCAATGATCGACGGCACCGCTGGCA  >  2:39638/1‑150                                                                                                                                                            CTC‑GTCAACCGGGGGACGGCGCAGCACATGGGGCATCCGATTACCAGCATCGGGGAGATCTTCAGAGGTTACTAGCGAGCTATCACACGGCCGCTGGCACTCCTGCGCTTGCGGCCGCGGGTAACTCAATGATCGACGGCACCGCTGGCA  >  1:597062/1‑150                                                                                                                                                            CTC‑GTCAACCGGGGGACGGCGCAGCACATGGGGCATCCGATTACCAGCATCGGGGAGATCTTCAGAGGTTACTAGCGAGCTATCACACGGCCGCTGGCACTCCTGCGCTTGCGGCCGCGGGTAACTCAATGATCGACGGCACCGCTGGCA  >  1:1332266/1‑150                                                                                                                                                                                                                                                                                                                    TGGCCAGACCGGCCTTGGTGCCAGCGGTGCCGTCGATCATTGAGTTACCCGCGGCCGCAAGCGCAGGAGTGCCAGCGGCCGTGTGATAGCTCGCTAGTAACCTCTGAAGATCTCCCCGATGCTGGTAATCGGATGCCCCATGTGCTGCGCCGTCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3188044‑3188199 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgtcccTC‑GTCAACCGGGGGACGGCGCAGCACATGGGGCATCCGATTACCAGCATCGGGGAGATCTTCAGAGGTTACTAGCGAGCTATCACACGGCCGCTGGCACTCCTGCGCTTGCGGCCGCGGGTAACTCAATGATCGACGGCACCGCTGGCA  <  NC_002947/3188210‑3188062

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.