New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 3409923 | 52 (0.700) | 4 (0.060) | 4/240 | NT | 7.5% | intergenic (‑446/‑90) | PP_3022/PP_3024 | AraC family transcriptional regulator/hypothetical protein |
? | NC_002947 | = 3409954 | 49 (0.700) | intergenic (‑477/‑59) | PP_3022/PP_3024 | AraC family transcriptional regulator/hypothetical protein |
TCGCCCTGGCAGCGATGGGCCTGGCAGTGGTGTTGCATACCAGCGAATACCTATTCCTGGCCATCAAGGTGGTGGGCGCGGCCTACCTGTTCTACATCGCCTGGCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3409768‑3409923 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cacccagAACTCCTGGCGCGCCAGGCGCCAAGTGCCGCCTGGGTGATCGCTTGCCACCACGGTCTCGCTCACGGGTGCGCGCCACAGTTGCCAGGCGATGTAGAACAGGTAGGCCGCGCCCACCACCTTGATGGCCAGGAATAGGTATTCGCTG < NC_002947/3409954‑3409808 TCGCCCTGGCAGCGATGGGCCTGGCAGTGGTGTTGCATACCAGCGAATACCTATTCCTGGCCATCAAGGTGGTGGGCGCGGCCTACCTGTTCTACATCGCCTGGCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATC > 2:1773716/1‑150 CCTGGCAGCGATGGGCCTGGCAGTGGTGTTGCATACCAGCGAATACCTATTCCTGGCCATCAAGGTGGTGGGCGCGGCCTACCTGTTCTACATCGCCTGGCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCC < 2:1306722/150‑1 CTGGCAGTGGTGTTGCATACCAGCGAATACCTATTCCTGGCCATCAAGGTGGTGGGCGCGGCCTACCTGTTCTACATCGCCTGGCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGAACTCCTGGCGCGC > 1:1299815/1‑150 AGCGAATACCTATTCCTGGCCATCAAGGTGGTGGGCGCGGCCTACCTGTTCTACATCGCCTGGCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGAACTCCTGGCGCGCCAGGCGCCAAGTGCCGCCTGG < 2:1299815/150‑1 TGGCCATCAAGGTGGTGGGCGCGGCCTACCTGTTCTACATCGCCTGGCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCAC > 1:124531/1‑95 TGGCCATCAAGGTGGTGGGCGCGGCCTACCTGTTCTACATCGCCTGGCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCAC < 2:124531/95‑1 TGGCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGAACTCCTGGCGCGCCAGGCGCCAAGTGCCGCCTGGGT > 1:1424344/1‑92 TGGCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGAACTCCTGGCGCGCCAGGCGCCAAGTGCCGCCTGGGT < 2:1424344/92‑1 CCAGAACTCCTGGCGCACCAGGCGCCAAGTGCCGCCTGGGTGATCGCTTGCCACCACGGTCTCGCTCACGGGTGCGCGCCACAGTTGCCAGGCGATGTAGAACAGGTAGGCCGCGCCCACCACCTTGATGGCCAGGAATAGGTATTCGCT > 1:1044040/1‑150 CAGAACTCCTGGCGCGCCAGGCGCCAAGTGCCGCCTGGGTGATCGCTTGCCACCACGGTCTCGCTCACGGGTGCGCGCCACAGTTGCCAGGCGATGTAGAACAGGTAGGCCGCGCCCACCACCTTGATGGCCAGGAATAGGTATTCGCTG > 1:189914/1‑150 CAGAACTCCTGGCGCGCCAGGCGCCAAGTGCCGCCTGGGTGATCGCTTGCCACCACGGTCTCGCTCACGGGTGCGCGCCACAGTTGCCAGGCGATGTAGAACAGGTAGGCCGCGCCCACCACCTTGATGGCCAGGAATAGGTATTCGCTG < 2:1517280/150‑1 TCGCCCTGGCAGCGATGGGCCTGGCAGTGGTGTTGCATACCAGCGAATACCTATTCCTGGCCATCAAGGTGGTGGGCGCGGCCTACCTGTTCTACATCGCCTGGCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3409768‑3409923 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cacccagAACTCCTGGCGCGCCAGGCGCCAAGTGCCGCCTGGGTGATCGCTTGCCACCACGGTCTCGCTCACGGGTGCGCGCCACAGTTGCCAGGCGATGTAGAACAGGTAGGCCGCGCCCACCACCTTGATGGCCAGGAATAGGTATTCGCTG < NC_002947/3409954‑3409808 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |