| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3523465 | NA (NA) | 6 (0.080) | 3/242 | NT | NA | coding (135/1533 nt) | PP_3114 | transposase |
| ? | NC_002947 | = 3523493 | NA (NA) | coding (163/1533 nt) | PP_3114 | transposase | |||||
GATTCGGTATAATCCGCGGCATGATTTCCATGCCCGAAAACCTCCCTGACGATCCGGTTCTGCTCAAGCAACTGCTTGAGCAGATGATCCACGAGCGCGCGTCCGACAAGAGCAAGATCGTTCATCTCGAAGAGGAAGTTGCGCTGTTGCGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3523311‑3523465‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccagTCTGCTCGGTCTTGCGCCCGAACAAGCGCTGGCGCAACAGCGCAACTTCCTCTTCGAGATGAACGATCTTGCTCTTGTCGGACGCGCGCTCGTGGATCATCTGCTCAAGCAGTTGCTTGAGCAGAACCGGATCGTCAGGGAGGTTTT < NC_002947/3523493‑3523347 GATTCGGTATAATCCGCGGCATGATTTCCATGCCCGAAAACCTCCCTGACGATCCGGTTCTGCTCAAGCAACTGCTTGAGCAGATGATCCACGAGCGCGCGTCCGACAAGAGCAAGATCGTTCATCTCGAAGAGGAAGTTGCGCTGTTGC < 1:1734748/150‑1GATTCGGTATAATCCGCGGCATGATTTCCATGCCCGAAAACCTCCCTGACGATCCGGTTCTGCTCAAGCAACTGCTTGAGCAGATGATCCACGAGCGCGCGTCCGACAAGAGCAAGATCGTTCATCTCGAAGAGGAAGTTGCGCTGTTGC > 2:468498/1‑150 TTCGGTATAATCCGCGGCATGATTTCCATGCCCGAAAACCTCCCTGACGATCCGGTTCTGCTCAAGCAACTGCTTGAGCAGATGATCCACGAGCGCGCGTCCGACAAGGGCAAGATCGTTCATCTCGAAGAGGAAGTTGCGCTGTTGCGC > 2:1458467/1‑150 TTCGGTATAATCCGCGGCATGATTTCCATGCCCGAAAACCTCCCTGACGATCCGGTTCTGCTCAAGCAACTGCTTGAGCAGATGATCCACGAGCGCGCGTCCGACAAGAGCAAGATCGTTCATCTCGAAGAGGAAGTTGCGCTGTTGCGC > 1:1095575/1‑150 CGGTATAATCCGCGGCATGATTTCCATGCCCGAAAACCTCCCTGACGATCCGGTTCTGCTCAAGCAACTGCTTGAGCAGATGATCCACGAGCGCGCGTCCGACAAGAGCAAGATCGTTCATCTCGAAGAGGAAGTTGCGCTGTTGCGCCA < 1:549561/150‑1 GGTATAATCCGCGGCATGATTTCCATGCCCGAAAACCTCCCTGACGATCCGGTTCTGCTCAAGCAACTGCTTGAACAGATGATCCACGAGCGCGCGTCCGACAAGAGCAAGATCGTTCATCTCGAAGAGGAAGTTGCGCTGTTGCGCCAG > 2:400192/1‑150 TATAATCCGCGGCATGATTTCCATGCCCGAAAACCTCCCTGACGATCCGGTTCTGCTCAAGCAACTGCTTGAGCAGATGATCCACGAGCGCGCGTCCGACAAGAGCAAGATCGTTCATCTCGAAGAGGAAGTTGCGCTGTTGC < 1:1499088/143‑1 TATAATCCGCGGCATGATTTCCATGCCCGAAAACCTCCCTGACGATCCGGTTCTGCTCAAGCAACTGCTTGAGCAGATGATCCACGAGCGCGCGTCCGACAAGAGCAAGATCGTTCATCTCGAAGAGGAAGTTGCGCTGTTGC > 2:1499088/1‑143 GAAAACCTCCCTGACGATCCGGTTCTGCTCAAGCAACTGCTTGAGCAGATGATCCACGAGCGCGCGTCCGACAAGAGCAAGATCGTTCATCTCGAAGAGGAAGTTGCGCTGTTGCGCCAGTCTGCTCGGTCTTGCGCCCGAACAAGCGCT < 1:1643696/150‑1 GAAAACCTCCCTGACGATCCGGTTCTGCTCAAGCAACTGCTTGAGCAGATGATCCACGAGCGCGCGTCCGACAAGAGCAAGATCGTTCATCTCGAAGAGGAAGTTGCGCTGTTGCGCCAGTCTGCTCGGTCTTGCGCCCGAACAAGCGCT < 2:768333/150‑1 AACTGCTTGAGCAGATGATCCACGAGCGCGCGTCCGACAAGAGCAAGATCGTTCATCTCGAAGAGGAAGTTGCGCTGTTGCGCCAGTCTGCTCGGTCTTGCGCCCGAACAAGCGCTGGCGCAACAGCGCAACTTC < 1:1508560/135‑1 AACTGCTTGAGCAGATGATCCACGAGCGCGCGTCCGACAAGAGCAAGATCGTTCATCTCGAAGAGGAAGTTGCGCTGTTGCGCCAGTCTGCTCGGTCTTGCGCCCGAACAAGCGCTGGCGCAACAGCGCAACTTC < 1:1511209/135‑1 AACTGCTTGAGCAGATGATCCACGAGCGCGCGTCCGACAAGAGCAAGATCGTTCATCTCGAAGAGGAAGTTGCGCTGTTGCGCCAGTCTGCTCGGTCTTGCGCCCGAACAAGCGCTGGCGCAACAGCGCAACTTC > 2:1508560/1‑135 AACTGCTTGAGCAGATGATCCACGAGCGCGCGTCCGACAAGAGCAAGATCGTTCATCTCGAAGAGGAAGTTGCGCTGTTGCGCCAGTCTGCTCGGTCTTGCGCCCGAACAAGCGCTGGCGCAACAGCGCAACTTC > 2:1511209/1‑135 GCCAGTCTGCTCGGTCTTGCGCCCGAACAAGCGCTGGCGCAACAGCGCAACTTCCTCTTCGAGATGAACGATCTTGCTCCTGTCGGACGCGCGCTCGTGGATCATCTGCTCAAGCAGTTGCTTGAGCAGAACCGGATCGTCAGGGAGGTT > 2:538761/1‑150 CCAGTCTGCTCGGTCTTGCGCCCGAACAAGCGCTGGCGCAACAGCGCAACTTCCTCTTCGAGAT > 1:1261621/1‑64 CCAGTCTGCTCGGTCTTGCGCCCGAACAAGCGCTGGCGCAACAGCGCAACTTCCTCTTCGAGAT < 2:1261621/64‑1 CCAGTCTGCTCGGTCTTGCGACCGAACAAGCGCTGGCGCAACAGCGCAACTTCCTCTTCGAGATGAACGATCTTGCTCTTGTCGGACGCGCGCTCGTGGATCATCTGCTCAAGCAGTTGCTTGAGCAGAACCGGATCGTCAGGGAGGTTT > 1:961774/1‑150 CAGTCTGCTCGGTCTTGCGCCCGAACAAGCGCTGGCGCAACAGCGCAACTTCCTCTTCGAGATGAACGATCTTGCTCTTGTCGGACGCGCGCTCGTGGATCATCTGCTCAAGCAGTTGCTTGAGCAGAACCGGATCGTCAGGGAGGTTTT > 1:452259/1‑150 GATTCGGTATAATCCGCGGCATGATTTCCATGCCCGAAAACCTCCCTGACGATCCGGTTCTGCTCAAGCAACTGCTTGAGCAGATGATCCACGAGCGCGCGTCCGACAAGAGCAAGATCGTTCATCTCGAAGAGGAAGTTGCGCTGTTGCGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3523311‑3523465‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccagTCTGCTCGGTCTTGCGCCCGAACAAGCGCTGGCGCAACAGCGCAACTTCCTCTTCGAGATGAACGATCTTGCTCTTGTCGGACGCGCGCTCGTGGATCATCTGCTCAAGCAGTTGCTTGAGCAGAACCGGATCGTCAGGGAGGTTTT < NC_002947/3523493‑3523347 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |