New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3928383 =	65 (0.870)	13 (0.200)	11/220	NT	21.4%	intergenic (+15/‑125)	peaE/PP_3464	phenylacetaldehyde dehydrogenase/hypothetical protein
	?	NC_002947	3928464 =	39 (0.600)					intergenic (+96/‑44)	peaE/PP_3464	phenylacetaldehyde dehydrogenase/hypothetical protein

CAGCAGGGCCAATGTGCAGGCGAGTGTGTGCCTCATGGGGTTGCTCCATGGTTTTTATTGTTGTTTTTTTGTTGCCTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGGCATGTGATACCTGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3928543‑3928383 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acccgcgaagaggccggCACAGGCAACAAAAAAACAACAATAAAAACCATGGAGCAACCCCATGAGGCACACACTCGCCTGCACATTGGCCCTGCTGTTAACCGCCCCCGCCAGCCAAGCCTACGAGCTGTACAACCACGATGGCACCACCCTCAACGCCGACCT  >  NC_002947/3928464‑3928611                                                                                                                                                                                                                                                                                                                       CAGCTGGGCAAGTGTGCAGGGGAGTGTGGGCTTGATGGGGTTGCTTCATGGGTTTTATTGTTGTTTTTTTGTTGCATGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGGCATGTGATACCTGGTGTAGGAGCGGGTTTACCCGC                                                                                                                                                                 <  2:1804/150‑1          CAATGTGCAGGCGAGTGTGTGCCTCATGGGGTTGCTCCATGGTTTTTATTGTTGTTTTTTTGTTGCCTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGGCATGTGATACCTGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCC                                                                                                                                                        <  1:1542943/150‑1           AATGTGCAGGCGAGTGTGTGCCTCATGGGGTTGCTCCATGGTTTTTATTGTTGTTTTTTTGTTGCCTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGGCATGTGATACCTGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCG                                                                                                                                                       <  1:1366163/150‑1                                                                            CTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGGCATGTGATACCTGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCAACAAAAAAACAACAATAAA                                                                                                                           >  2:1852552/1‑113                                                                            CTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGGCATGTGATACCTGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCAACAAAAAAACAACAATAAA                                                                                                                           <  1:1852552/113‑1                                                                                       TCTTCGCGGGTGAACCCGCTCCTACAGGGCATGTGATACCTGGTGTAGGAGCGGGTTTACCCGCGAAGAGGC                                                                                                                                                         <  2:224898/72‑1                                                                                       TCTTCGCGGGTGAACCCGCTCCTACAGGGCATGTGATACCTGGTGTAGGAGCGGGTTTACCCGCGAAGAGGC                                                                                                                                                         >  1:224898/1‑72                                                                                         TTCGCGGGTGAACCCGCTCCTACAGGGCATGTGATACCTGGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACAAAAAAACAACAATAAAAACCATGGAGCAACCCCATGAGGCACACACTCGCCTGCACATTGGCCCTG                                                                         >  1:1063025/1‑150                                                                                          TCGCGGGTGAACCCGCTCCTACAGGGCATGTGATACCTGGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACAAAAAAACAACAATAAAAACCATGGAGCAACCCCATGAGGCACACACTCGCCTGCACATTGGCCCTGC                                                                        <  2:1063025/150‑1                                                                                                     CCCGCTCCTACAGGGCATGTGATACCTGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACAAAAAAACAACAATAAAAACCATGGAGCAACCCCATGAGGCACACACTCGCCTGCACATTGG                                                                              <  1:1175032/133‑1                                                                                                     CCCGCTCCTACAGGGCATGTGATACCTGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACAAAAAAACAACAATAAAAACCATGGAGCAACCCCATGAGGCACACACTCGCCTGCACATTGG                                                                              >  2:1175032/1‑133                                                                                                      CCGCTCCTACAGGGCATGTGATACCTGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACAAAAAAACAACAATAAAAACCATGGAGCAACCCCATGAGGCACACACTCGCCTGCACATTGGCCCTGCTGTTAACCGCCC                                                            >  2:1317387/1‑150                                                                                                        GCTCCTACAGGGCATGTGATACCTGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACAAAAAAACAACAATAAAAACCATGGAGCAACCCCATGAG                                                                                                     >  1:911128/1‑107                                                                                                        GCTCCTACAGGGCATGTGATACCTGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACAAAAAAACAACAATAAAAACCATGGAGCAACCCCATGAG                                                                                                     <  2:911128/107‑1                                                                                                               CAGGGCATGTGATACCTGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCAACAAAAAAACAACAATAAAAACCATGGA                                                                                                                  >  1:1804248/1‑87                                                                                                               CAGGGCATGTGATACCTGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCAACAAAAAAACAACAATAAAAACCATGGA                                                                                                                  <  2:1804248/87‑1                                                                                                                                      ttcGCGGGTGAACCCGCGAAGAGGCCGGCACAGGCAACAAAAAAACAACAATAAAAACCATG                                                                                                                    <  2:1175653/59‑1                                                                                                                                      ttcGCGGGTGAACCCGCGAAGAGGCCGGCACAGGCAACAAAAAAACAACAATAAAAACCATG                                                                                                                    >  1:1175653/4‑62                                                                                                                                                  CCCGCGAAGAGGCCGGCACAGGCAACAAAAAAACAACAATAAAAACCATGGAGCAACCCCATGAGGCACACACTCGCCTGCACATTGGCCCTGCTGTTAACCGCCCCCGCCAGCCAAGCCTACGAGCTGTACAACCACGATGGCACCACC                <  2:529192/150‑1                                                                                                                                                   CCGCGAAGAGGCCGGCACAGGCAACAAAAAAACAACAATAAAAACTATGGAGCAACCCCATGAGGCACACACTCGCCTGCACATTGGCCCTGCTGTTAACCGCCCCCGCCAGCCAAGCCTACGAGCTGTACAACCACGATGGCACCACCC               >  1:368822/1‑150                                                                                                                                                   CCGCGAAGAGGCCGGCACAGGCAACAAAAAAACAACAATAAAAACCATGGAGCAACCCCATGAGGCACACACTCGCCTGCACATTGGCCCTGCTGTTAACCGCCCCCGCCAGCCAAGCCTACGAGCTGTACAACCACGATGGCACCACCC               >  2:228679/1‑150                                                                                                                                                   CCGCGAAGAGGCCGGCACAGGCAACAAAAAAACAACAATAAAAACCATGGAGCAACCCCATGAGGCACACACTCGCCTGCACATTGGCCCTGCTGTT                                                                    <  2:1445851/97‑1                                                                                                                                                   CCGCGAAGAGGCCGGCACAGGCAACAAAAAAACAACAATAAAAACCATGGAGCAACCCCATGAGGCACACACTCGCCTGCACATTGGCCCTGCTGTT                                                                    >  1:1445851/1‑97                                                                                                                                                        AAGAGGCCGGCACAGGCAACAAAAAAACAACAATAAAAACCATGGAGCAACCCCATGAGGCACACACTCGCCTGCACATTGGCCCTGCTGTTAACCGCCCCCGCCAGCCAAGCCTACGAGCTGTACAACCACGATGG                       >  1:1902158/1‑137                                                                                                                                                        AAGAGGCCGGCACAGGCAACAAAAAAACAACAATAAAAACCATGGAGCAACCCCATGAGGCACACACTCGCCTGCACATTGGCCCTGCTGTTAACCGCCCCCGCCAGCCAAGCCTACGAGCTGTACAACCACGATGG                       <  2:1902158/137‑1                                                                                                                                                             GCCGGCACAGGCAACAAAAAAACAACAATAAAAACCATGGAGCAACCCCATGAGGCACACACTCGCCTGCACATTGGCCCTGCTGTTAACCGCCCCCGCCAGCCAAGCCTACGAGCTGTACAACCACGATGGCACCACCCTCAACGCCGA     <  2:250940/150‑1                                                                                                                                                                GGCACAGGCAACAAAAAAACAACAATAAAAACCATGGAGCAACCCCATGAGGCACACACTCGCCTGCACATTGGCCCTGCTGTTAACCGCCCCCGCCAGCCAAGCCTACGAGCTGTACAACCACGATGGCACCACCCTCAACGCCGACCT  >  2:1403527/1‑150                                                                                                                                                                                                                                                                                                                       CAGCAGGGCCAATGTGCAGGCGAGTGTGTGCCTCATGGGGTTGCTCCATGGTTTTTATTGTTGTTTTTTTGTTGCCTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGGCATGTGATACCTGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3928543‑3928383 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acccgcgaagaggccggCACAGGCAACAAAAAAACAACAATAAAAACCATGGAGCAACCCCATGAGGCACACACTCGCCTGCACATTGGCCCTGCTGTTAACCGCCCCCGCCAGCCAAGCCTACGAGCTGTACAACCACGATGGCACCACCCTCAACGCCGACCT  >  NC_002947/3928464‑3928611

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.