| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3969448 = | NA (NA) | 3 (0.040) | 3/242 | NT | NA | coding (39/321 nt) | PP_3499 | transposase |
| ? | NC_002947 | 3969478 = | NA (NA) | coding (69/321 nt) | PP_3499 | transposase | |||||
CGGCTTTTAGCGGGACGAAAGCTGGTAGTGAAGCCGCTGCGGGCTGATCTCGATAGAGCGGCAGCCATTTGCGGATGACGTTGGCATTGATGCCGTGGTTGATGGCGACACTGGACACGGTTGCGCCAGGTTGCAGGCATTCCTGAACGACCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3969602‑3969448‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acctggCGCAACCGTGTCCAGTGTCGCCATCAACCACGGCATCAATGCCAACGTCATCCGCAAATGGCTGCCGCTCTATCGAGATCAGCCCGCAGCGGCTTCACTACCAGCTTTCGTCCCGCTAAAAGCCGCACCTAAACGGCCAGTCGAAGCGT > NC_002947/3969478‑3969626 CGGCTTTTAGCGGGACGAAAGCTGGTAGTGAAGCCGCTGCGGGCTGATCTCGATAGAGCGGCAGCCATTTGCGGATGACGTTGGCATTGATGCCGTGGTTGATGGCGACACTGGACACGGTTGCGCCAGGTTGCAGGCATTCCTGAACGA > 1:1315270/1‑150 GGCTTTTAGCGGGACGAAAGCTGGTAGTGAAGCCGCTGCGGGCTGATCTCGATAGAGCGGCAGCCATTTGCGGATGACGTTGGCATTGATGCCGTGGTTGATGGCGACACTGGACACGGTTGCGCCAGGTTGCAGGCATTCCTGAACGAg < 2:1506046/150‑2 GGCTTTTAGCGGGACGAAAGCTGGTAGTGAAGCCGCTGCGGGCTGATCTCGATAGAGCGGCAGCCATTTGCGGATGACGTTGGCATTGATGCCGTGGTTGATGGCGACACTGGACACGGTTGCGCCAGGTTGCAGGCATTCCTGAACGAC > 1:1306267/1‑150 GGCTTTTAGCGGGACGAAAGCTGGTAGTGAAGCCGCTGCGGGCTGATCTCGATAGAGCGGCAGCCATTTGCGGATGACGTTGGCATTGATGCCGTGGTTGATGGCGACACTGGACACGGTTGCGCCAGGTTGCAGGCATTCCTGAACGAC > 2:1583182/1‑150 GCTTTTAGCGGGACGAAAGCTGGTAGTGAAGCCGCTGCGGGCTGATCTCGATAGAGCGGCAGCCATTTGCGGATGACGTTGGCATTGATGCCGTGGTTGATGGCGACACTGGACACGGTTGCGCCAGGTTGCAGGCATTCCTGAACGACC > 2:22026/1‑150 CTTTTAGCGGGACGAAAGCTGGTAGTGAAGCCGCTGCGGGCTGATCTCGATAGAGCGGCAGCCATTTGCGGATGACGTTGGCATTGATGCCGTGGTTGATGGCGACACTGGACACGGTTGCGCCAGGTTGCAGGCATTCCTGAACGACCT > 1:564309/1‑150 GCCGCTGCGGGCTGATCTCGATAGAGCGGCAGCCATTTGCGGATGACGTTGGCATTGATGCCGTGGTTGATGGCGACACTGGACACGGTTGCGCCAGGTTGCAGGCATTCCTGAACGACCTG > 1:466517/1‑122 GCCGCTGCGGGCTGATCTCGATAGAGCGGCAGCCATTTGCGGATGACGTTGGCATTGATGCCGTGGTTGATGGCGACACTGGACACGGTTGCGCCAGGTTGCAGGCATTCCTGAACGACCTG < 2:466517/122‑1 GTTGCGCCAGGTTGCAGGCATTCCTGAACGACCTGGCGCAACCGTGTCCAGTGTCGCCATCAACCACGGCATCAATGCCAACGTCATCCGCAAATGGCTGCCGCTCTATCGAGATCAGCCCGCAGCGGCTTCACTACCAGCTTTCGTCCC > 2:432162/1‑150 GCCAGGTTGCAGGCATTCCTGAACGACCTGGCGCAACCGTGTCCAGTGTCGCCATCAACCACGGCATCAATGCCAACGTCATCCGCAAATGGCTGCCGCTCTATC > 1:1636561/1‑105 GCCAGGTTGCAGGCATTCCTGAACGACCTGGCGCAACCGTGTCCAGTGTCGCCATCAACCACGGCATCAATGCCAACGTCATCCGCAAATGGCTGCCGCTCTATC < 2:1636561/105‑1 CCTGGCGCAACCGTGTCCAGTGTCGCCATCAACCACGGCATCAATGCCAACGTCATCCGCAAATGGCTGCCGCTCTATCGAGATCAGCCCGCAGCGGCTTCACTACCAGCTTTCGTCCCGCTAAAAGCCGCACCTAAACGGCCAGTCGAA > 1:767646/1‑150 CCTGGCGCAACCGTGTCCAGTGTCGCCATCAACCACGGCATCAATGCCAACGTCATCCGCAAATGGCTGCCGCTCTATCGAGATCAGCCCGCAGCGGCTTCACTACCAGCTTTCGTCCCGCTAAAAGCCGCACCTAAACGGCCAGTCGAA > 2:1702941/1‑150 CCTGGCGCAACCGTGTCCAGTGTCGCCATCAACCACGGCATCAATGCCAACGTCATCCGCAAATGGCTGCCGCTCTATCGAGATCAGCCCGCAGCGGCTTCACTACCAGCTTTCGTCCCGCTAAAAGCCGCACCTAAACGGCCAGTC < 1:344737/147‑1 CCTGGCGCAACCGTGTCCAGTGTCGCCATCAACCACGGCATCAATGCCAACGTCATCCGCAAATGGCTGCCGCTCTATCGAGATCAGCCCGCAGCGGCTTCACTACCAGCTTTCGTCCCGCTAAAAGCCGCACCTAAACGGCCAGTC > 2:344737/1‑147 CTGGCGCAACCGTGTCCAGTGTCGCCATCAACCACGGCATCAATGCCAACGTCATCCGCAAATGGCTGCCGCTCTATCGAGATCAGCCCGCAGCGGCTTCACTACCAGCTTTCGTCCCGCTAAAAGCCGCACCTAAACGGCCA > 1:1897571/1‑143 CTGGCGCAACCGTGTCCAGTGTCGCCATCAACCACGGCATCAATGCCAACGTCATCCGCAAATGGCTGCCGCTCTATCGAGATCAGCCCGCAGCGGCTTCACTACCAGCTTTCGTCCCGCTAAAAGCCGCACCTAAACGGCCA < 2:1897571/143‑1 TGGCGCAACCGTGTCCAGTGTCGCCATCAACCACGGCATCAATGCCAACGTCATCCGCAAATGGCTGCCGCTCTATCGAGATCAGCCCGCAGCGGCTTCACTACCAGCTTTCGTCCCGCTAAAAGCCGCACCTAAACGGCCAGTCGAAGC > 1:112793/1‑150 TGGCGCAACCGTGTCCAGTGTCGCCATCAACCACGGCATCAATGCCAACGTCATCCGCAAATGGCTGCCGCTCTATCGAGATCAGCCCGCAGCGGCTTCACTACCAGCTTTCGTCCCGCTAAAAGCCGCACCTAAACGGCCAGTCGAAGC < 2:621895/150‑1 GCGCAACCGTGTCCAGTGTCGCCATCAACCACGGCATCAATGCCAACGTCATCCGCAAATGGCTGCCGCTCTATCGAGATCAGCCCGCAGCGGCTTCACTACCAGCTTTCGTCCCGCTAAAAGCCGCACCTAAACGGCCAGTCGAAGCGT < 2:1571969/150‑1 CGGCTTTTAGCGGGACGAAAGCTGGTAGTGAAGCCGCTGCGGGCTGATCTCGATAGAGCGGCAGCCATTTGCGGATGACGTTGGCATTGATGCCGTGGTTGATGGCGACACTGGACACGGTTGCGCCAGGTTGCAGGCATTCCTGAACGACCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3969602‑3969448‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acctggCGCAACCGTGTCCAGTGTCGCCATCAACCACGGCATCAATGCCAACGTCATCCGCAAATGGCTGCCGCTCTATCGAGATCAGCCCGCAGCGGCTTCACTACCAGCTTTCGTCCCGCTAAAAGCCGCACCTAAACGGCCAGTCGAAGCGT > NC_002947/3969478‑3969626 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |