| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4104015 = | 81 (1.090) | 4 (0.060) | 4/246 | NT | 5.0% | coding (510/2133 nt) | PP_3612 | TonB‑dependent receptor |
| ? | NC_002947 | 4104035 = | 73 (1.010) | coding (530/2133 nt) | PP_3612 | TonB‑dependent receptor | |||||
TAGCCATCATCGCGGAAGGTGTCGCTGTCTTCGAAGGCACCGGTCACGCGGTAGGCCTGGTTGCTTTGCGGGTCGGCCCAGCCGGTGTCGAACTGGGTTCGGCGTTTGCCTTCGCTGTCGACGTTCATGCCGACTTCGCGCTTGGGCGTGAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4104167‑4104015‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaagTCGGCATGAACGTCGACAGCGAAGGCAAACGCCGAACCCAGTTCGACACCGGCTGGGCCGACCCGCAAAGCAACCAGGCCTACCGCGTGACCGGTGCCTTCGAAGACAGCGACACCTTCCGCGATGATGGCTACATCGACCGCAAGGC > NC_002947/4104035‑4104182 TAGCCATCATCGCGGAAGGTGTCGCTGTCTTCGAAGGCACCGGTCACGCGGTAGGCCTGGTTGCTTTGCGGGTCGGCCCAGCCGGTGTCGAACTGGGTTCGGCGTTTGCCTTCGCTGTCGACGTTCATGCCGACTTCGCGCTTGGGCGTG > 2:1211979/1‑150 GCCATCATCGCGGAAGGTGTCGCTGTCTTCGAAGGCACCGGTCACGCGGTAGGCCTGGTTGCTTTGCGGGTCGGCCCAGCCGGTGTCGAACTGGGTTCGGCGTTTGCCTTCGCTGTCGACGTTCATGCCGACTTCGCGCTTGGGCGTGAA < 1:1003256/150‑1 GCCATCATCGCGGAAGGTGTCGCTGTCTTCGAAGGCACCGGTCACGCGGTAGGCCTGGTTGCTTTGCGGGTCGGCACCGACAGTGTCGAACTGGGCTCGGCGTGTGCCTTCGCTGTCGACGTTCATGCCGACTTCGCGCTTGGGCGTGAA > 1:225789/1‑150 ACGCGGTAGGCCTGGTTGCTTTGCGGGTCGGCCCAGCCGGTGTCGAACTGGGTTCGGCGTTTGCCTTCGCTGTCGACGTTCATGCCGACTTCGCGCTTGGGCGTGAA > 1:973268/1‑107 ACGCGGTAGGCCTGGTTGCTTTGCGGGTCGGCCCAGCCGGTGTCGAACTGGGTTCGGCGTTTGCCTTCGCTGTCGACGTTCATGCCGACTGCGCGCTTGGGCGTGAA < 2:973268/107‑1 ATGCCGACTTCGCGCTTGGGCGTGAAGTCGGCATGAACGTCGACAGCGAAGGCAAACGCCGAAC > 1:1028425/1‑64 ATGCCGACTTCGCGCTTGGGCGTGAAGTCGGCATGAACGTCGACAGCGAAGGCAAACGCCGAAC < 2:1028425/64‑1 GACTTCGCGCTTGGGCGTGAAGTCGGCATGAACGTCGACAGCGAAGGCAAACGCCGAACCCAGTTCGAC > 1:1398921/1‑69 GACTTCGCGCTTGGGCGTGAAGTCGGCATGAACGTCGACAGCGAAGGCAAACGCCGAACCCAGTTCGAC < 2:1398921/69‑1 GAAGTCGGCATGAACGTCGACAGCGAAGGCAAACGCCGAACCCAGTTCGACACCGGCTGGGCGGACCCGCAAAGCAACCAGGCCTACCGCGTGACCGGTGCCGTCGAAGACAGCGACACCGTCCGCGATGATGGCGACATCGACCGCAAG > 1:857277/1‑150 GAAGTCGGCATGAACGTCGACAGCGAAGGCAAACGCCGAACCCAGTTCGACACCGGCTGGGCCGACCCGCAAAGCAACCAGGCCTACCGCGTGACCGGTGCCTTCGAAGACAGCGACACCTTCCGCGATGATGGCTACATCGACCGCAAG < 1:1071348/150‑1 GAAGTCGGCATGAACGTCGACAGCGAAGGCAAACGCCGAACCCAGTTCGACACCGGCTGGGCCGACCCGCAAAGCAACCAGGCCTACCGCGTGACCGGTGCCTTCGAA > 1:1828071/1‑108 GAAGTCGGCATGAACGTCGACAGCGAAGGCAAACGCCGAACCCAGTTCGACACCGGCTGGGCCGACCCGCAAAGCAACCAGGCCTACCGCGTGACCGGTGCCTTCGAA < 2:1828071/108‑1 AGTCGGCATGAACGTCGACAGCGAAGGCAAACGCCGAACCCAGTTCGACACCGGCTGGGCCGACCCGCAAAGCAACCAGGCCTACCGCGTGACCGGTGCCTTCGAAGACAGCGACACCTTCCGCGATGATGGCTACATCGACCGCAAGGC < 1:1158473/150‑1 TAGCCATCATCGCGGAAGGTGTCGCTGTCTTCGAAGGCACCGGTCACGCGGTAGGCCTGGTTGCTTTGCGGGTCGGCCCAGCCGGTGTCGAACTGGGTTCGGCGTTTGCCTTCGCTGTCGACGTTCATGCCGACTTCGCGCTTGGGCGTGAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4104167‑4104015‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaagTCGGCATGAACGTCGACAGCGAAGGCAAACGCCGAACCCAGTTCGACACCGGCTGGGCCGACCCGCAAAGCAACCAGGCCTACCGCGTGACCGGTGCCTTCGAAGACAGCGACACCTTCCGCGATGATGGCTACATCGACCGCAAGGC > NC_002947/4104035‑4104182 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |