New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4408241	70 (0.940)	4 (0.060)	4/244	NT	6.3%	coding (87/444 nt)	PP_3890	hypothetical protein
	?	NC_002947	= 4408301	51 (0.710)					coding (27/444 nt)	PP_3890	hypothetical protein

AACACCAGGTCAGGCACGCCAGCCTTGACGCCCTGCCCCTTCAGCTTGGCGGCCACGGCCTTGATCCGGTGCCCACCGTTCGGGACGTGGTAGATCAGTTTGTAAGCCTGCGGGTAGCGCAGCTGCAGCTCCTGCATCAGCGCAGCCTGCTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4408089‑4408241 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctccCGCCCTTCGCCCATTCAGGGCCAAGCCGCGCCGCGCCAAGCCCGTCGACCGGGAAGGGCAGGAGCAGGCTGCGCTGATGCAGGAGCTGCAGCTGCGCTACCCGCAGGCTT  <  NC_002947/4408301‑4408192                                                                                                                                                                                                                                                                         AACACCAGGTCAGGCACGCCAGCCTTGACGCCCTGCCCCTTCAGCTTGGCGGCCACGGCCTTGATCCGGTGCCCACCGTTCGGGACGTGGTAGATCAGTTTGTAAGCCTGCGGGTAGCGCAGCTGCAGCTCCTGCATCAGCGCAGCCTGC                                                                                                                   >  1:1324023/1‑150  ACACCAGGTCAGGCACGCCAGCCTTGACGCCCTGCCCCTTCAGCTTGGCGGCCACGGCCTTGATCCGGTGCCCACCGTTCGGGACGCGGTAGATCAGTTTGTAAGCCTGCGGGTAGCGCAGCTGCAGCTCCTGCATCAGCGCAGCCTGCT                                                                                                                  >  1:923049/1‑150    ACCAGGTCAGGCACGCCAGCCTTGACGCCCTGCCCCTTCAGCTTGGCGGCCACGGCCTTGATCCGGTGCCCACCGTTCGGGACGTGGTAGATCAGTTTGTAAGCCTGCGGGTAGCGCAGCTGCAGCTCCTGTATCAGCGCAGCCTGCTCC                                                                                                                >  2:666787/1‑150    ACCAGGTCAGGCACGCCAGCCTTGACGCCCTGCCCCTTCAGCTTGGCGGCCACGGCCTTGATCCGGTGCCCACCGTTCGGGACGTGGTAGATCAGTTTGTAAGCCTGCGGGTAGCGCAGCTGCAGCTCCTGCATCAGCGCAGCCTGCTCC                                                                                                                >  2:1182823/1‑150    ACCAGGTCAGGCACGCCAGCCTTGACGCCCTGCCCCTTCAGCTTGGCGGCCACGGCCTTGATCCGGTGCCCACCGTTCGGGACGTGGTAGATCAGGTTGTAGGCTTGCCTCTAGCGCAGCTGCAGCTCCTGCATCAGCGCAGCCTGCTCC                                                                                                                >  1:205498/1‑150                       CCTTGACGCCCTGCCCCTTCAGCTTGGCGGCCACGGCCTTGATCCGGTGCCCACCGTTCGGGACGTGGTAGATCAGTTTGTAAGCCTGCGGGTAGCGCAGCTGCAGCTCCTGCATCAGCGCAGCCTGCTC                                                                                                                 >  1:810255/1‑130                       CCTTGACGCCCTGCCCCTTCAGCTTGGCGGCCACGGCCTTGATCCGGTGCCCACCGTTCGGGACGTGGTAGATCAGTTTGTAAGCCTGCGGGTAGCGCAGCTGCAGCTCCTGCATCAGCGCAGCCTGCTC                                                                                                                 <  2:810255/130‑1                                                       ACGGCCTTGATCCGGTGCCCACCGTTCGGGACGTGGTAGATCAGTTTGTAAGCCTGCGGGTAGCGCAGCTGCAGCTCCTGCATCAGCGCAGCCTGCTCCCGCCCTTCGCCCATTCAGGGCCAAGCCGCGCCGCGCCAAGCCCGTCGACCG                                                             >  1:1061440/1‑150                                                                       GCCCACCGTTCGGGACGTGGTAGATCAGTTTGTAAGCCTGCGGGTAGCGCAGCTGCAGCTCCTGCATCAGCGCAGCCTGCTCCCGCCCTTCGCCCATTCAGGGCCAAGCCGCGCCGCGCCAAGCCCGTCGACCGGGAAGGGCAGGAGCAG                                             <  2:1061440/150‑1                                                                                               TCAGTTTGTAAGCCTGCGGGTAGCGCAGCTGCAGCTCCTGCATCAGCGCAGCCTGCTCCCGCCCTTCGCCCATTCAGGGCCAAGCCGCGCCGCGCCAAGCCCGTCGACCGGGAAGG                                                       <  1:1780933/116‑1                                                                                               TCAGTTTGTAAGCCTGCGGGTAGCGCAGCTGCAGCTCCTGCATCAGCGCAGCCTGCTCCCGCCCTTCGCCCATTCAGGGCCAAGCCGCGCCGCGCCAAGCCCGTCGACCGGGAAGG                                                       >  2:1780933/1‑116                                                                                                                                                     GCTCCCGCCCTTCGCCCATTCAGGGCCAAGCCGCGCCGCGCCAAGCCCGTCGACCGGGAAGGGCAGGAGCAGGCTGCGCTGATGCAGGAGCTGCAGCTGCGCTACCCGCAGGCTT  >  1:606282/1‑115                                                                                                                                                     GCTCCCGCCCTTCGCCCATTCAGGGCCAAGCCGCGCCGCGCCAAGCCCGTCGACCGGGAAGGGCAGGAGCAGGCTGCGCTGATGCAGGAGCTGCAGCTGCGCTACCCGCAGGCTT  <  2:606282/115‑1                                                                                                                                                        CCCGCCCTTCGCCCATTCAGGGCCAAGCCGCGCCGCGCCAAGCCCGTCGACCGGGAAGGGCAGGAGCAGGCTGCGCTGATGCAGGAGCTGCAGCTGCGCTACCC          <  1:956986/104‑1                                                                                                                                                        CCCGCCCTTCGCCCATTCAGGGCCAAGCCGCGCCGCGCCAAGCCCGTCGACCGGGAAGGGCAGGAGCAGGCTGCGCTGATGCAGGAGCTGCAGCTGCGCTACCC          >  2:956986/1‑104                                                                                                                                                                                                                                                                         AACACCAGGTCAGGCACGCCAGCCTTGACGCCCTGCCCCTTCAGCTTGGCGGCCACGGCCTTGATCCGGTGCCCACCGTTCGGGACGTGGTAGATCAGTTTGTAAGCCTGCGGGTAGCGCAGCTGCAGCTCCTGCATCAGCGCAGCCTGCTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4408089‑4408241 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctccCGCCCTTCGCCCATTCAGGGCCAAGCCGCGCCGCGCCAAGCCCGTCGACCGGGAAGGGCAGGAGCAGGCTGCGCTGATGCAGGAGCTGCAGCTGCGCTACCCGCAGGCTT  <  NC_002947/4408301‑4408192

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.