New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4524439 =	61 (0.820)	8 (0.120)	8/226	NT	13.2%	intergenic (+18/‑175)	idh/PP_4013	isocitrate dehydrogenase/MutT/nudix family protein
	?	NC_002947	4524474 =	51 (0.770)					intergenic (+53/‑140)	idh/PP_4013	isocitrate dehydrogenase/MutT/nudix family protein

AAGGCGTGCATGACCCCTGTAGGAGCGGGTTCACCCGCGAATGCGATGGTGAGGCAAATGACGCATTCGCGGGTAAACCCGCTCCTACAAAGGCCGATGCAGGCCGCCAGATATCATTTATCCAGAAAGCACAAACCCCGGTGCGTGGCCGGGGTTTGTGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4524600‑4524439 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggggtttgtgctTTCTGGATAAATGATATCTGGCGGCCTGCATCGGCCTTTGTAGGAGCGGGTTTACCCGCGAATGCGTCATTTGCCTCACCATCGCATTCGCGGGTGAACCCGCTCCTACAGGGGTCATGCACGCCTTCAAGGAGCTGTTCATGACCTGG  >  NC_002947/4524474‑4524622                                                                                                                                                                                                                                                                                                                         AAGGCGTGCATGACCCCTGTAGGAGCGGGTTCACCCGCGAATGCGATGGTGAGGCAAATGACGCATTCGCGGGTAAACCCGCTCCTACAAAGGCCGATGCAGGCCGCCAGATATCATTTATCCAGAAAGCACAAACCCCGGTGCGTGGCC                                                                                                                                                                   >  1:360444/1‑150    GCGTGCATGACCCCTGTAGGAGCGGGTTCACCCGCGAATGCGATGGTGAGGCAAATGACGCATTCGCGGGTAAACCCGCTCCTACAAAGGCCGATGCAGGCCGCCAGATATCATTTATCCAGAAAGCACAAACCCCGGTGCGTGGCCGGG                                                                                                                                                                <  2:1063064/150‑1      GTGCATGACCCCTGTAGGAGCGGGTTCACCCGCGAATGCGATGGTGAGGCAAATGACGCATTCGCGGGTAAACCCGCTCCTACAAAGGCCGATGCAGACCGCCAGATATCATTTATCCAGAAAGCACAAACCCCGGTGCGTGGCCGGGGT                                                                                                                                                              <  1:209350/150‑1        GCATGTCCCCTGTAGGAGCGGGTGCACCCGCGAATGCGATGGTGAGGCAAATGACGTATTAGCGGGTAAACCCGCTCCTACAAAGGCCGATGCAGGCCGCCAGATATCATTTATCCAGAAAGCACAAACCCCGGTGCGTGGCCGGGGTTT                                                                                                                                                            <  2:791934/150‑1        GCATGACCCCTGTAGGAGCGGGTTCACCCGCGAATGCGATGGTGAGGCAAATGACGCATTCGCTGGTAAACCCGCTCCTACAAAGGCCGATGCAGGCCGCCAGATATCATTTATCCAGAAAGCACAAACCCCGGTGCGTGGCCGGGGTTT                                                                                                                                                            <  2:237513/150‑1        GCATGACCCCTGTAGGAGCGGGTTCACCCGCGAATGCGATGGTGAGGCAAATGACGCATTCGCGGGTAAACCCGCTCCTACAAAGGCCGATGCAGGCCGCCAGATATCATTTATCCAGAAAGCACAAACCCCGGTGCGTGGCCGGGGTTT                                                                                                                                                            <  2:1869288/150‑1        GCATGACCCCTGTAGGAGCGGGTTCACCCGCGAATGCGATGGTGAGGCAAATGACGCATTCGCGGGTAAACCCGCTCCTACAAAGGCCGATGCAGGCCGCCAGATATCATTTATCCAGAAAGCACAAACCCCGGTGCGTGGCCGGGGTTT                                                                                                                                                            <  1:717319/150‑1          ATGACCCCTGTAGGAGCGGGTTCACCCGCGAATGCGATGGTGAGGCAAATGACGCATTCGCGGGTAAACCCGCTCCTACAAAGGCCGATGCAGGCCGCCAGATATCATTTATCCAGAAAGCACAAACCCCGGTGCGTGGCCGGGGTTTGT                                                                                                                                                          <  1:1706164/150‑1          ATGACCCCTGTAGGAGCGGGTTCACCCGCGAATGCGATGGTGAGGCAAATGACGCATTCGCGGGTAAACCCGCTCCTACAAAGGCCGATGCAGGCCGCCAGATATCATTTATCCAGAAAGCACAAACCCCGGTGCGTGGCCGGGGTTTGT                                                                                                                                                          <  1:1814005/150‑1          ATGACCCCTGTAGGAGCGGGTTCACCCGCGAATGCGATGGTGAGGCAAATGACGCATTCGCGGGTAAACCCGCTCCTACAAAGGCCGATGCAGGCCGCCAGATATCATTTATCCAGAAAGCACAAACCCCGGTGCGTGGCCGGGGTTTGT                                                                                                                                                          >  2:1649891/1‑150                                                                                                                           CAGAAAGCACAAACCCCGGTGCGTGGCCGGGGTTTGTGCTTTCTGGATAAATGATATCTGGCGGCCTGCATCGGCCTTT                                                                                                                >  1:1615863/1‑79                                                                                                                           CAGAAAGCACAAACCCCGGTGCGTGGCCGGGGTTTGTGCTTTCTGGATAAATGATATCTGGCGGCCTGCATCGGCCTTT                                                                                                                <  2:1615863/79‑1                                                                                                                                   ACAAACCCCGGTGCGTGGCCGGGGTTTGTGCTTTCTGGATAAATGATATCTGGCGGCCTGCATCGGCCTTTGTAGGAGCGG                                                                                                      >  1:1533063/1‑81                                                                                                                                   ACAAACCCCGGTGCGTGGCCGGGGTTTGTGCTTTCTGGATAAATGATATCTGGCGGCCTGCATCGGCCTTTGTAGGAGCGG                                                                                                      <  2:1533063/81‑1                                                                                                                                       ACCCCGGTGCGTGGCCGGGGTTTGTGCTTTCTGGATAAATGATATCTGGCGGCCTGCATCGGCCTTTGTAGGAGCGGGTTTACCCGCGAATGCGTCA                                                                                  <  1:502118/97‑1                                                                                                                                       ACCCCGGTGCGTGGCCGGGGTTTGTGCTTTCTGGATAAATGATATCTGGCGGCCTGCATCGGCCTTTGTAGGAGCGGGTTTACCCGCGAATGCGTCA                                                                                  >  2:502118/1‑97                                                                                                                                         CCCGGTGCGTGGCCGGGGTTTGTGCTTTCTGGATAAATGATATCTGGCGGCCTGCATCGGCCTTTGTAGGAGCGGGTTTACCCGCGAATGCGTCATTTGCCTCACCATCGCATTCGCGGGTGAACCCGCTCCTACAGGG                                      >  1:652621/1‑139                                                                                                                                         CCCGGTGCGTGGCCGGGGTTTGTGCTTTCTGGATAAATGATATCTGGCGGCCTGCATCGGCCTTTGTAGGAGCGGGTTTACCCGCGAATGCGTCATTTGCCTCACCATCGCATTCGCGGGTGAACCCGCTCCTACAGGG                                      <  2:652621/139‑1                                                                                                                                                     CCGGGGTTTGTGCTTTCTGGATAAATGATATCTGGCGGTCTGCATCGGCCTTTGTAGGAGCGGGTTTACCCGCGAATGCGTCATTTGCCTCACCATCGCATTCGCGGGTGAACCCGCTCCTACAGGGGTCATGCACGCCTTCAAGGAGCT               <  2:209350/150‑1                                                                                                                                                     CCGGGGTTTGTGCTTTCTGGATAAATGATATCTGGCGGCCTGCATCGGCCTTTGTAGGAGCGGGTTTACCCGCGAATGCGTCATTTGCCTCACCATCGCATTCGCGGGTGAACCCGCTCCTACAGGGGTCATGCACGCCTTCAAGGAGCT               <  2:555024/150‑1                                                                                                                                                      CGGGGTTTGTGCTTTCTGGATAAATGATATCTGGCGGCCTGCATCGGCCTTTGTAGGAGCGGGTTTACCCGCGAATGCGTCATTTGCCT                                                                           >  2:884935/1‑89                                                                                                                                                      CGGGGTTTGTGCTTTCTGGATAAATGATATCTGGCGGCCTGCATCGGCCTTTGTAGGAGCGGGTTTACCCGCGAATGCGTCATTTGCCT                                                                           <  1:884935/89‑1                                                                                                                                                         GGTTTGTGCTTTCTGGATAAATGATATCTGGCGGCCTGCATCGGCCTTTGTAGGAGCGGGTTTACCCGCGAATGCGTCATTTGCCTCACCATCGCATTCGCGGGTGAACCCGCTCCTACAGGGGTCATGCACGCCTTCAAGGAGCTGTTC           <  1:1594491/150‑1                                                                                                                                                         GGTTTGTGCTTTCTGGATAAATGATATCTGGCGGCCTGCATCGGCCTTTGTAGGAGCGGGTTTACCCGCGAATGCGTCATTTGCCTCACCATCGCATTCGCGGGTGAACCCGCTCCTACAGGGGTCATGCACGCCTTCAAGGAGCTGTTC           <  1:1306047/150‑1                                                                                                                                                           TTTGTGCTTTCTGGATAAATGATATCTGGCGGCCTGCATCGGCCTTTGTAGGAGCGGGTTTACCCGCGAATGCGTCATTTGCCTCACCATCGCATTCGCGGGTGAACCCGCTCCTACAGGGGTCATGCACGCCTTCAAGGAGCTGTTCAT         <  2:1814005/150‑1                                                                                                                                                               TGCTTTCTGGATAAATGATATCTGGCGGCCTGCATCGGCCTTTGTAGGAGCGGGTTTACCCGCGAATGCGTCATTTGCCTCACCATCGCATTCGCGGGTGAACCCGCTCCTACAGGGGTCATGCACGCCTTCAAGGAGCTGTTCATGACC     >  2:447269/1‑150                                                                                                                                                                 CTTTCTGGATAAATGATATCTGGCGGCCTGCATCGGCCTTTGTAGGAGCGGGTTTACCCGCGAATGCGTCATTTGCCTCACCATCGCATTCGCGGGTGAACCCGCTCCTACAGGGGTCATGCACGCCTTCAAGGAGCTGTTCATGACCTG   >  2:659820/1‑150                                                                                                                                                                 CTTTCTGGATAAATGATATCTGGCGGCCTGCATCGGCCTTTGTAGGAGCGGGTTTACCCGCGAATGCGTCATTTGCCTCACCATCGCATTCGCGGGTGAACCCGCTCCTACAGGGGTCATGCACGCCTTCAAGGAGCTGTTCATGACCTG   <  2:716557/150‑1                                                                                                                                                                  TTTCTGGATAAATGATATCTGGCGGCCTGCATCGGCCTTTGTAGGAGCGGGTTTACCCGCGAATGCGTCATTTGCCTCACCATCGCATTCGCGGGTGAACCCGCTCCTACAGGGGTCATGCACGCCTTCAAGGAGCTGTTCATGACCTGG  >  2:276761/1‑150                                                                                                                                                                  TTTCTGGATAAATGATATCTGGCGGCCTGCATCGGCCTTTGTAGGAGCGGGTTTACCCGCGAATGCGTCATTTGCCTCACCATCGCATTCGCGGGTGAACCCGCTCCTACAGGGGTCATGCACGCCTTCAAGGAGCTGTTCATGACCT    <  1:1648550/148‑1                                                                                                                                                                  TTTCTGGATAAATGATATCTGGCGGCCTGCATCGGCCTTTGTAGGAGCGGGTTTACCCGCGAATGCGTCATTTGCCTCACCATCGCATTCGCGGGTGAACCCGCTCCTACAGGGGTCATGCACGCCTTCAAGGAGCTGTTCATGACCT    >  2:1648550/1‑148                                                                                                                                                                                                                                                                                                                         AAGGCGTGCATGACCCCTGTAGGAGCGGGTTCACCCGCGAATGCGATGGTGAGGCAAATGACGCATTCGCGGGTAAACCCGCTCCTACAAAGGCCGATGCAGGCCGCCAGATATCATTTATCCAGAAAGCACAAACCCCGGTGCGTGGCCGGGGTTTGTGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4524600‑4524439 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggggtttgtgctTTCTGGATAAATGATATCTGGCGGCCTGCATCGGCCTTTGTAGGAGCGGGTTTACCCGCGAATGCGTCATTTGCCTCACCATCGCATTCGCGGGTGAACCCGCTCCTACAGGGGTCATGCACGCCTTCAAGGAGCTGTTCATGACCTGG  >  NC_002947/4524474‑4524622

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.