New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4533623	86 (1.150)	6 (0.090)	6/230	NT	6.7%	intergenic (+21/‑153)	PP_4020/cpo	oxidoreductase/non‑heme chloroperoxidase
	?	NC_002947	= 4533688	88 (1.300)					intergenic (+86/‑88)	PP_4020/cpo	oxidoreductase/non‑heme chloroperoxidase

GCGATGCCATTCTCGGCGATGAAGACCTGTTGGCGCTGTACCAAGGCATCGACAACGGCCGCTTCCCCGGCGGCGACCTGCTGGCTGCGCCTTTGGAAGCTGCGGCAAAGGCCTGGTACCGCATGCGCGACCGTGTCTGAAGGGCATCAGTGTTGCCTGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4533463‑4533623 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgttgcctgtgTGGGCCTCTTCGCAGGTGAACCCGCTCCTACACTGTGAGGTCCCTTTCACCCGCGAAGAGGCCCGCACAGGCAACACTGATGCCCTTCAGACACGGTCGCGCATGCGGTACCAGGCCTTTGCCGCAGCTTCCAAAGGCGCAGCCAGCAG  <  NC_002947/4533688‑4533540                                                                                                                                                                                                                                                                                                                        GCGATGCCATTCTCGGCGATGAAGACCTGTTGGCGCTGTACCAAGGCATCGACAACGGCCGCTTCCCCGGCGGCGACCTGCTGGCTGCGCCTTTGGAAGCTGCGGCAAAGGCCTGGTACCGCATGCGCGACCGTGTCTGAAGGGCATCAG                                                                                                                                                                  >  1:1143950/1‑150   GATGCCATTCTCGGCGATGAAGACCTGTTGGCGCTGTACCAAGGCATCGACAACGGCCGCTTCCCCGGCGGCGACCTGCTGGCTGCGCCTTTGGAAGCTGCGGCAAAGGCCTGGTACCGCATGCGCGACCGTGTCTGAAGGGCATCAGTG                                                                                                                                                                <  1:1708065/150‑1        CATTCTCGGCGATGAAGACCTGTTGGCGCTGTACCAAGGCATCGACAACGGCCGCTTCCCCGGCGGCGACCTGCTGGCTGCGCCTTTGGAAGCTGCGGCAAAGGCCTGGTACCGCATGCGCGACCGTGTCTGAAGGGCATCAGTGTTGCC                                                                                                                                                           >  2:233386/1‑150             TCGGCGATGAAGACCTGTTGGCGCTGTACCAAGGCATCGACAACGGCCGCTTCCCCGGCGGCGACCTGCTGGCTGCGCCTTTGGAAGCTGCGGCAAAGGCCTGGTACCGCATGCGCGACCGTGTCTGAAGGGCATCAG                                                                                                                                                                  >  2:74781/1‑138             TCGGCGATGAAGACCTGTTGGCGCTGTACCAAGGCATCGACAACGGCCGCTTCCCCGGCGGCGACCTGCTGGCTGCGCCTTTGGAAGCTGCGGCAAAGGCCTGGTACCGCATGCGCGACCGTGTCTGAAGGGCATCAG                                                                                                                                                                  <  1:74781/138‑1                                                 TCGACAACGGCCGCTTCCCCGGCGGCGACCTGCTGGCTGCGCCTTTGGAAGCTGCGGCAAAGGCCTGGTACCGCATGCGCGACCGTGTCTGAAGGGCATCAGTGTTGCCTGTGCGGGCCTCTTCGCAGGTGAACCCGCTCCTACACTGTG                                                                                                                  >  1:821667/1‑150                                                            CGCTTCCCCGGCGGCGACCTGCTGGCTGCGCCTTTGGAAGCTGCGGCAAAGGCCTGGTACCGCATGCGCGACCGTGTCTGAAGGGCATCAGTGTTGCCTGTGCGGGCCTCTTCGCAGGTGAACCCGCTCCTACACTGTGAGGTCCCTTTC                                                                                                       <  2:821667/150‑1                                                             GCTTCCCCGGCGGCGACCTGCTGGCTGCGCCTTTGGAAGCTGCGGCAAAGGCCTGGTACCGCATGCGCGACCGTGTCTGAAGGGCATCAGT                                                                                                                                                                 <  2:819280/91‑1                                                             GCTTCCCCGGCGGCGACCTGCTGGCTGCGCCTTTGGAAGCTGCGGCAAAGGCCTGGTACCGCATGCGCGACCGTGTCTGAAGGGCATCAGT                                                                                                                                                                 >  1:819280/1‑91                                                                        GGCGACCTGCTGGCTGCGCCTTTGCAAAGAGCGGCAAAGGCCTGGTACCGCATGCGCGACCGTGTCTGAAGGGCATCAGTGTTGCCTGTGTGGGCCTCTTCGCAGGTGAACCCGCTCCTACACTGTGAGGTCCCTTTCACCCGCGAAGAG                                                                                           <  1:1088/150‑1                                                                          CGACCTGCTGGCTGCGCCTTTGGAAGCTGCGGCAAAGGCCTGGTACCGCATGCGCGACCGTGTCTGAAGGGCATCAGTGTTGCCTGTGTGGGCCTCTTCGCAGGTGAACCCGCTCCTACACTGTGAGGTCCCTTTCACCCGCGAAGAGGC                                                                                         <  2:1230922/150‑1                                                                           GACCTGCTGGCTGCGCCTTTGGAAGCTGCGGCAAAGGCCTGGTACCGCATGCGCGACCGTGTCTGAAGGGTATCAGTGTT                                                                                                                                                              <  2:328330/80‑1                                                                           GACCTGCTGGCTGCGCCTTTGGAAGCTGCGGCAAAGGCCTGGTACCGCATGCGCGACCGTGTCTGAAGGGCATCAGTGTT                                                                                                                                                              >  1:328330/1‑80                                                                                            TTTGGAAGCTGCGGCAAAGGCCTGGTACCGCATGCGCGACCGTGTCTGAAGGGCATCAGTGTTGCCTGTGTGGGCCTCTTCGCAGGTGAACCCGCTCCTACACTGTGAGGTCCCTTTCACCCGC                                                                                                 >  2:837909/1‑124                                                                                            TTTGGAAGCTGCGGCAAAGGCCTGGTACCGCATGCGCGACCGTGTCTGAAGGGCATCAGTGTTGCCTGTGTGGGCCTCTTCGCAGGTGAACCCGCTCCTACACTGTGAGGTCCCTTTCACCCGC                                                                                                 <  1:837909/124‑1                                                                                                                                                         TTGCCTGTGTGGGCCTCTTCGCAGGTGAACCCGCTCCTACACTGTGAGGTCCCTTTCACCCGCGAAGAGGCCCGCACAGGCAACACTGATGCCCTTCAGACACGGTCGCGCATGCGGTACCAGGCCTTTGCCGCAGCTTCCAAAGGCGCA          <  1:78979/150‑1                                                                                                                                                         TTGCCTGTGTGGGCCTCTTCGCAGGTGAACCCGCTCCTACACTGTGAGGTCCCTTTCACCCGCGAAGAGGCCCGCACAGGCAACACTGATGCCCTTCAGACACGGTCGCGCATGCGGTACCAGGCCTTTGCCGCAGCTTCCAAAGGCGCA          >  1:146746/1‑150                                                                                                                                                         TTGCCTGTGTGGGCCTCTTCGCAGGTGAACCCGCTCCTACACTGTGAGGTCCCTTTCACCCGCGAAGAGGCCCGCACAGGCAACACTGATGCCCTTCAGACACGGTCGCGCATGCGGTACCAGGCCTTTGCCGCAGCTTCCAAAGGCGCA          >  1:535950/1‑150                                                                                                                                                         TTGCCTGTGTGGGCCTCTTCGCAGGTGAACCCGCTCCTACACTGTGAGGTCCCTTTCACCCGCGAAGAGGCCCGCACAGGCAACACTGATGCCCTTCAGACAC                                                         >  2:315600/1‑103                                                                                                                                                         TTGCCTGTGTGGGCCTCTTCGCAGGTGAACCCGCTCCTACACTGTGAGGTCCCTTTCACCCGCGAAGAGGCCCGCACAGGCAACACTGATGCCCTTCAGACAC                                                         <  1:315600/103‑1                                                                                                                                                         TTGCCTGTGTGGGCCTCTTCGCAGGTGAACCCGCTCCTACACTGTGAGGNCCCTTTCACCCGCGAAGAGGCCCGCACAGGCAACACTGATGCCCTTCAGACACGGTCGCGCATGCGGTACCAGGCCTTTGCCGCAGCTTCCAAAGGCGCA          >  1:1606918/1‑150                                                                                                                                                            CCTGTGTGGGCCTCTTCGCAGGTGAACCCGCTCCTACACTGTGAGGTCCCTTTCACCCGCGAAGAGGCCCGCACAGGCAACACTGATGCCCTTCAGACACGGTCGCGCATGCGGTACCAGGCCTTTGCCGCAGCTTCCAAAGGCGCAGCC       >  1:852347/1‑150                                                                                                                                                             CTGTGTGGGCCTCTTCGCAGGTGAACCCGCTCCTACACTGTGAGGTCCCTTTCACCCGCGAAGAGGCCCGCACAGGCAACACTGATGCCCTTCAGACACGGTCGCGCATGCGGTACCAGGCCTTTGCCGCAGCTTCCAAAGGCGCAGCCA      >  1:287628/1‑150                                                                                                                                                             CTGGGTGGGCCTCTTCGCAGGTGAACCCGCTCCTACCCTGTGAGGTCCCTTTCACCCGCTAAGAGGCCCTCACAGTCATCACTGATGCCCTTCAGACACGGTCGCGCATGCGGTACCAGGCCTTTGCCGCAGCTTCCAAAGGCGCAGCCA      <  2:687038/150‑1                                                                                                                                                                 GTGGGCCTCTTCGCAGGTGAACCCGCTCCTACACTGTGAGGTCCCTTTCACCCGCGAAGAGGCCCGCCCAGGCAACACTGATGCCCTTCAGACACGGTCGCGCATGCGGTACCAGGCCTTTGCCGCAGCTTCCAAAGGCGCAGCCAGCAG  <  1:119191/150‑1                                                                                                                                                                 GTGGGCCTCTTCGCAGGTGAACCCGCTCCTACACTGTGAGGTCCCTTTCACCCGCGAAGAGGCCCGCACAGGCAACACTGATGCCCTTCAGACACGGTCGCGCATGCGGTACCAGGCCTTTGCCGCAGCTTCCAAAGGCGCAGCCAGCAG  <  2:603529/150‑1                                                                                                                                                                                                                                                                                                                        GCGATGCCATTCTCGGCGATGAAGACCTGTTGGCGCTGTACCAAGGCATCGACAACGGCCGCTTCCCCGGCGGCGACCTGCTGGCTGCGCCTTTGGAAGCTGCGGCAAAGGCCTGGTACCGCATGCGCGACCGTGTCTGAAGGGCATCAGTGTTGCCTGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4533463‑4533623 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgttgcctgtgTGGGCCTCTTCGCAGGTGAACCCGCTCCTACACTGTGAGGTCCCTTTCACCCGCGAAGAGGCCCGCACAGGCAACACTGATGCCCTTCAGACACGGTCGCGCATGCGGTACCAGGCCTTTGCCGCAGCTTCCAAAGGCGCAGCCAGCAG  <  NC_002947/4533688‑4533540

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.