New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4840527	56 (0.750)	3 (0.040)	3/242	NT	5.5%	coding (848/1443 nt)	ccoN‑II	cbb3‑type cytochrome c oxidase subunit 1
	?	NC_002947	= 4840567	49 (0.690)					coding (888/1443 nt)	ccoN‑II	cbb3‑type cytochrome c oxidase subunit 1

AGCGGCCGATCTACTCGTATCGCTTGTCGATCGTGCACTTCTGGGCGCTGATCACCCTGTACATCTGGGCCGGCCCGCATCACCTGCACTACACCGCCCTGCCTGACTGGGCGCAGTCGCTGGGCATGGTAATGTCGATCATCCTGCTGGCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4840374‑4840527 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgccCGACAGGGTCATCATGCCGTTGATCATGCCGCCCCAGCTTGGCGCCAGCAGGATGATCGACATTACCATGCCCAGCGACTGCGCCCAGTCAGGCAGGGCGGTGTAGTGCAGGTGATGCGGGCCGGCCCAGATGTACAGGGTGATCAG  <  NC_002947/4840567‑4840421                                                                                                                                                                                                                                                                                                               AGCGGCCGATCTACTCGTATCGCTTGTCGATCGTGCACTTCTGGGCGCTGATCACCCTGTACATCTGGGCCGGCCCGCATCACCTGCACTACACCGCCCTGCCTGACTGGGCGCAGTCGCTGGGCATGGTAATGTCGATCATCCTGCTGG                                                                                                                                                         <  1:943534/150‑1    GGCNGATCTACTCGTATCGCTTGTCGATCGTGCACTTCTGGGCGCTGATCACCCTGTACATCTGGGCCGGCCCGCATCACCTGCACTACACCGCCCTGCCTGACTGGGCGCAGTCGCTGGGCATGGTAATGTCGATCATCCTGCTGGCGC                                                                                                                                                      >  2:1193540/1‑150                                                    TCACCCTGTACATCTGGGCCGGCCCGCATCACCTGCACTACACCGCCCTGCCTGACTGGGCGCAGTCGTTGGGCATGGTAATGTCGATCATCCTGCTGGCGCCCGACAGGGATATCTTGCCGTTGATCATGCCGCCCCAGCTTGGCGCCA                                                                                                      <  1:151114/150‑1                                                                                                    TGCCTGACTGGGCGCAGTCGCTGGGCATGGTAATGTCGATCATCCTGCTGTCGCCCGACAGGGTCATCATGCCGTTGATCATGCCGCCCCAGCTT                                                                                                             <  2:1213812/95‑1                                                                                                    TGCCTGACTGGGCGCAGTCGCTGGGCATGGTAATGTCGATCATCCTGCTGGCGCCCGACAGGGTCATCATGCCGTTGATCATGCCGCCCCAGCTT                                                                                                             >  1:1213812/1‑95                                                                                                                                                     GGCGCCCGACAGGGTCATCATGCCGTTGATCATGCCGCCCCAGCTTGGCGCCAGCAGGATGATCGACATTACCATGCCCAGCGACTGCGCCCAGTCAGGCAGGGCGGCGTAGTGCAGGTGATGCGGGCCGGCCCAGATGTACAGGGTGAT     >  2:724793/1‑150                                                                                                                                                       CGCCCGACAGGGTAATCATGCCGTTGATCATGCCGCCCCAGCTTGGCGCCAGCAGGATGATCGACATTACCATGCCCAGCGACTCCGCCCATACATTCAGGGCGGTTTAGTGCAGGTGATGCGGGCCGGCCCAGATGTACAGGGTGATCA   <  2:543814/150‑1                                                                                                                                                        GCCCGACAGGGTCATCATGCCGGTGAGCATGCCGCCTCAGCTTGGCGCCAGCAGGATGATCGACATTACCATGCCCAGCGACTGCGCCCAGTCAGGCAGGGCGGTGTAGTGCAGGTGATGCGGGCCGGCCCAGATGTACAGGGTGATCAG  >  2:967329/1‑150                                                                                                                                                          CCGACAGGGTCATCATGCCGTTGATCATGCCGCCCCAGCTTGGCGCCAGCAGGATGATCGACATTACCATGCCCAGCGACTGCGCCCAGTCAGGCAGGGCGGTGTAGTGCAGGTGA                                  >  1:546409/1‑116                                                                                                                                                          CCGACAGGGTCATCATGCCGTTGATCATGCCGCCCCAGCTTGGCGCCAGCAGGATGATCGACATTACCATGCCCAGCGACTGCGCCCAGTCAGGCAGGGCGGTGTAGTGCAGGTGA                                  <  2:546409/116‑1                                                                                                                                                                                                                                                                                                               AGCGGCCGATCTACTCGTATCGCTTGTCGATCGTGCACTTCTGGGCGCTGATCACCCTGTACATCTGGGCCGGCCCGCATCACCTGCACTACACCGCCCTGCCTGACTGGGCGCAGTCGCTGGGCATGGTAATGTCGATCATCCTGCTGGCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4840374‑4840527 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgccCGACAGGGTCATCATGCCGTTGATCATGCCGCCCCAGCTTGGCGCCAGCAGGATGATCGACATTACCATGCCCAGCGACTGCGCCCAGTCAGGCAGGGCGGTGTAGTGCAGGTGATGCGGGCCGGCCCAGATGTACAGGGTGATCAG  <  NC_002947/4840567‑4840421

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.