| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4893598 = | 63 (0.840) | 6 (0.100) | 6/200 | NT | 13.5% | intergenic (+28/‑180) | pyk/PP_4302 | pyruvate kinase/urea transporter |
| ? | NC_002947 | 4893677 = | 27 (0.460) | intergenic (+107/‑101) | pyk/PP_4302 | pyruvate kinase/urea transporter | |||||
AGTGGAGGTTGATGGGGGAGCGGTGGGCCTCTTTGGGCCTCGGTTTTCCGCGGTCGGGTAGAGCGGTATTCAGGGAGGGCTTTGCCCTCCAATCGCGACACAAGGCCGCTCCCACAGGGACTGCATTCCCTTGTGCCAGCGTGGCCCTGTGGGAGCGGCCTTGTGTCGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4893768‑4893598‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccctgtgggagcggccttgtgtcgcgaTTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCACTGACTGCCCCATGTACACCAAAAATTTCGTCAACCCGTGCCCCGACTGGGCCACG > NC_002947/4893677‑4893822 AGTGGAGGTTGATGGGGGAGCGGTGGGCCTCTTTGGGCCTCGGTTTTCCGCGGTCGGGTAGAGCGGTATTCAGGGAGGGCTTTGCCCTCCACTCGCGCCACATGGCCACGCCCGCAGGGACTGCGTTCTCTTGTTCCAGCGTGGCCCTGT < 2:312562/150‑1AGTGGAGGTTGATGGGGGAGCGGTGGGCCTCTTTGGGCCTCGGTTTTCCGCGGTCGGGTAGAGCGGTATTCAGGGAGGGCTTTGCCCTCCAATCGCGACACAAGGCCGCTCCCACAGGGACTGCATTCCCTTGTGCCAGCGTGGCCCTGT > 1:300991/1‑150 GTGGAGGTTGATGGGGGAGCGGTGGGCCTCTTTGGGCCTCGGTTTTCCGCGGTCGGGTAGAGCGGTATTCAGGGAGGGCTTTGCCCTCCAATCGCGACACAAGGCCGCTCCCACAGGGACTGCATTCCCTTGTGCCAGCGTGGCCCTGTG > 1:885431/1‑150 ATGGGGGAGCGGTGGGCCTCTTTGGGCCTCGGTTTTCCGCGGCCGGGTAGAGCGGTATTCAGGGAGGGCTTTGCCCTCCAATCGCGACACAAGGCCGCTCCCACAGGGACTGCATTCCCTTGTGCCAGCGTGGCCCTGTGGGAGCGGCCT > 2:1264344/1‑150 TGGGGGAGCGGTGGGCCTCTTTGGGCCTCGGTTTTCCGCGGTCGGGTAGAGCGGTATTCAGGGAGGGCTTTGCCCTCCAATCGCGACACAAGGCCGCTCCCACAGGGACTGCATTCCCTTGTGCCAGCGTGGCCCTGTGGGAGCGGCCTT < 2:1337830/150‑1 GGGGGAGCGGTGGGCCTCTTTGGGCCTCGGTTTTCCGCGGTCGGGTAGAGCGGTATTCAGGGAGGGCTTTGCCCTCCAATCGCGACACAAGGCCGCTCCCACAGGGACTGCATTCCCTTGTGCCAGCGTGGCCCTGTGGGAGCGGCCTTG > 2:979235/1‑150 GGGCCTCGGTTTTCCGCGGTCGGGTAGAGCGGTATTCAGGGAGGGCTTTGCCCTCCAATCGCGACACAAGGCCGCTCCCACAGGGACTGCATTCCCTTGTGCCAGCGTGGCCCTGTGGGAGCGGCCTT < 1:1461770/128‑1 GGGCCTCGGTTTTCCGCGGTCGGGTAGAGCGGTATTCAGGGAGGGCTTTGCCCTCCAATCGCGACACAAGGCCGCTCCCACAGGGACTGCATTCCCTTGTGCCAGCGTGGCCCTGTGGGAGCGGCCTT > 2:1461770/1‑128 AGGGAGGGCTTTGCCCTCCAATCGCGACACAAGGCCGCTCCCACAGGGACTGCATTCCCTTGTGCCAGCGTGGCCCTGT < 2:349557/79‑1 AGGGAGGGCTTTGCCCTCCAATCGCGACACAAGGCCGCTCCCACAGGGACTGCATTCCCTTGTGCCAGCGTGGCCCTGT > 1:349557/1‑79 CAATCGCGACACAAGGCCGCTCCCACAGGGACTGCATTCCCTTGTGCCAGCGTGGCCCTGTGGGA > 2:304939/1‑65 CAATCGCGACACAAGGCCGCTCCCACAGGGACTGCATTCCCTTGTGCCAGCGTGGCCCTGTGGGA < 1:304939/65‑1 GCTCCCACAGGGACTGCATTCCCTTGTGCCAGCGTGGCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTCCCCGACCGCGGAAAACCGAGGCCCAAAGACGCCCCCCCCCCCCCCccccccc > 2:1151474/1‑143 TCCCACAGGGACTGCATTCCCTTGTGCCAGCGTGGCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTC > 2:917240/1‑150 TCCCACAGGGACTGCATTCCCTTGTGCCAGCGTGGCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTC < 1:917240/150‑1 CACAGGGACTGCATTCCCTTGTGCCAGCGTGGCCCTGTGGGAGCGGCCTTGTGTCGCAATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCAC > 1:916653/1‑150 ACAGGGACTGCATTCCCTTGTGCCAGCGTGGCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGG > 1:738172/1‑123 ACAGGGACTGCATTCCCTTGTGCCAGCGTGGCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGG < 2:738172/123‑1 CTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCACTGACTGCCCCATGTACACCAAAAATTTCGTCAAC > 1:249660/1‑150 CTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCACTGACTGCCCCATGTACACCAAAAATTTCGTCAAC < 1:1337830/150‑1 TGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCACTGACTGCCCCATGTACACCAAAAATTTCGTCAACC > 1:1675103/1‑150 GAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCACTGACTGCCCCATGTACACCAAAAATTTCGTCAACCCGTGC > 1:1784511/1‑150 CGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCACTGACTGCCCCATGTACACCAAAAATTTCGTCAACCCGTGCCCC < 1:1871270/150‑1 CGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCAATTCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCACTGACTGCCCCATGTACACCAAAAATTTCGTCAACCCGTGCCCC < 1:895601/150‑1 GGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCACTGACTGCCCCATGTACACCAAAAATTTCGTCAACCCGTGCCCCG > 2:1878175/1‑150 GCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCACTGACTGCCCCATGTACACCAAAAATTTCGTCAACCCGTGCCCCGA < 2:1675103/150‑1 TCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCACTGACTGCCCCATGTACACCAAAAATTTCGTCAACCCGTGCCCCGACTGGGCCA > 1:1870414/1‑150 TCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCACTGACTGCCCCATGTACAC > 1:1088673/1‑115 TCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCACTGACTGCCCCATGTACAC < 2:1088673/115‑1 GCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCACTGACTGCCCCATGTACACCAAAAATTTCGTCAACCCGTGCCCCGACTGGGCCACG > 1:199916/1‑150 AGTGGAGGTTGATGGGGGAGCGGTGGGCCTCTTTGGGCCTCGGTTTTCCGCGGTCGGGTAGAGCGGTATTCAGGGAGGGCTTTGCCCTCCAATCGCGACACAAGGCCGCTCCCACAGGGACTGCATTCCCTTGTGCCAGCGTGGCCCTGTGGGAGCGGCCTTGTGTCGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4893768‑4893598‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccctgtgggagcggccttgtgtcgcgaTTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCACTGACTGCCCCATGTACACCAAAAATTTCGTCAACCCGTGCCCCGACTGGGCCACG > NC_002947/4893677‑4893822 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |