New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5571529 =	101 (1.350)	5 (0.070) +C	4/252	NT	5.6%	intergenic (+100/+41)	queG/yicG	epoxyqueuosine reductase/inner membrane protein
	?	NC_002947	5786543 =	68 (0.910)					intergenic (+30/‑101)	PP_5068/trxC	hypothetical protein/thioredoxin

GCGATGTTGCTCACACTGTTTGGCGGCTTCCTGGTGCGCCTGTTGGCAATCCGCTTCCACTGGGAAATGCCCAAGTTCCACTACAACGACCAGCAGTGACGCAATTTACAAGCGCAACATGGCCCATGTGGGAGCGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5571668‑5571529 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCCGCGAAGCAGGCAACGTGATGG‑ATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGG  >  NC_002947/5786543‑5786615                                                                                                                                             |                                                                           GCGATGTTGCTCACACTGTTTGGCGGCTTCCTGGTGCGCCTGTTGGCAATCCGCTTCCACTGGGAAATGCCCAAGTTCCACTACAACGACCAGCAGTGACGCAATTTACAAGCGCAACATGGCCCATGTGGGAGCGGGCACGCCCGCtcc                                                                   <  1:617196/150‑4               ACTGTTTGGCGGCTTCCTGGTGCGCCTGTTGGCAATCCGCTTCCACTGGGAAATGCCCAAGTTCCACTACAACGACCAGCAGTGACGCAATTTACAAGCGCAACATGGACCACGAGTGAGCGGTCGCGCCCGCGAAGCAGGCAACacagg                                                     >  2:1590960/1‑145                                             GGCAATCCGCTTCCACTGGGAAATGCCCAAGTTCCACTACAACGACCAGCAGTGACGCAATTTACAAGCGCAACATGGCCCATGTGGGAGCGGGCGCGCCCGCGAAGCAGGCTACGCAGGGA‑ATGGCACCGGCTTCGCCGGTGTTCGCGG                      <  1:1590960/150‑1                                                                        CAAGTTCCACTACAACGACCAGCAGTGACGCAATTTACAAGCGCAACATGGCCCTTGTGGGAGCGGGCGCGCCCGCGAAGCAGGCAACACAGGGA‑ATGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATGG  >  1:1235364/1‑143                                                                        CAAGTTCCACTACAACGACCAGCAGTGACGCAATTTACAAGCGCAACATGGCCCTTGTGGGAGCGGGCGCGCCCGCGAAGCAGGCAAC‑ACAGGGAATGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACATGG  <  2:1235364/143‑1                                                                                                                                             |                                                                           GCGATGTTGCTCACACTGTTTGGCGGCTTCCTGGTGCGCCTGTTGGCAATCCGCTTCCACTGGGAAATGCCCAAGTTCCACTACAACGACCAGCAGTGACGCAATTTACAAGCGCAACATGGCCCATGTGGGAGCGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5571668‑5571529 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCCGCGAAGCAGGCAACGTGATGG‑ATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGG  >  NC_002947/5786543‑5786615

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.