New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5653263 =	77 (1.030)	6 (0.080)	5/254	NT	7.2%	coding (100/252 nt)	PP_4962	hypothetical protein
	?	NC_002947	5653302 =	77 (1.030)					coding (61/252 nt)	PP_4962	hypothetical protein

GTCAAACAATTGCCTGTGATGATGCTGGCCGGTCTGCTGAGCGCTTGCGCGGGCAGCCCGGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5653326‑5653263 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCATCATCACAGGCAATTGTTTGACCACCAGGGCACTCCCTTTGCCAAGCGCCGACGTCATCAGGCCTTGGCCCGCTCTTCCAGAATTGCCACAGCTGGCAGGACCTTGCCCTCG  >  NC_002947/5653302‑5653416                                                                                                                                                                                     GTCAAACAATTGCCTGTGATGATGCTGGCCGGTCTGCTGAGCGCTTGCGCGGGCAGCCCGGCCTGCATCATCACAGGCAATTGTTTGACCACCAGGGCACTCCCTTTGCCAAGCGCCGAC                                                             <  1:1333521/120‑1 GTCAAACAATTGCCTGTGATGATGCTGGCCGGTCTGCTGAGCGCTTGCGCGGGCAGCCCGGCCTGCATCATCACAGGCAATTGTTTGACCACCAGGGCACTCCCTTTGCCAAGCGCCGAC                                                             >  2:1333521/1‑120                          TGGCCGGTCTGCTGAGCGCTTGCGCGGGCAGCCCGGCCTGCATCATCACAGGCAATTGTTTGACCACCAGGGCACTCCCTTTGCCAAGCGCCGACGTCATCA                                                      <  1:1543320/102‑1                          TGGCCGGTCTGCTGAGCGCTTGCGCGGGCAGCCCGGCCTGCATCATCACAGGCAATTGTTTGACCACCAGGGCACTCCCTTTGCCAAGCGCCGACGTCATCA                                                      >  2:1543320/1‑102                          TGGCCGGTCTGCTGAGCGCTTGCGCGGGCAGCCCGGCCAGCATCATCACAGGCAATTGTTTGACCACCAGGGCACTCCCTTTGCCAAGCGCCGACGTCATCAGGCCTTGGCCCGCTCTTCCAGAATTGCCACAGCTGGCAGGACCTTGCC      >  2:899259/1‑150                              CGGTCTGCTGAGCGCTTGCGCGGGCAGCCCGGCCAGCAACATCACACGCAATTGTTTGACAACCAGGGCACTGCCTATGCCAAGCGCCGACGTCATCAGGCCTTGGCCCGCTCTTCCAGAATTGCCACAGCTGGCAGGACCTTGCCCTCG  >  2:839385/1‑150                                                                                                                                                                                     GTCAAACAATTGCCTGTGATGATGCTGGCCGGTCTGCTGAGCGCTTGCGCGGGCAGCCCGGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5653326‑5653263 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCATCATCACAGGCAATTGTTTGACCACCAGGGCACTCCCTTTGCCAAGCGCCGACGTCATCAGGCCTTGGCCCGCTCTTCCAGAATTGCCACAGCTGGCAGGACCTTGCCCTCG  >  NC_002947/5653302‑5653416

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.