| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 6077900 | 76 (1.020) | 3 (0.050) | 3/206 | NT | 4.7% | intergenic (‑146/+92) | PP_5329/PP_5330 | phosphate ABC transporter substrate‑binding protein/MFS transporter |
| ? | NC_002947 | = 6077952 | 61 (1.010) | intergenic (‑198/+40) | PP_5329/PP_5330 | phosphate ABC transporter substrate‑binding protein/MFS transporter | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CCGCCATCAAACGCTTCAGTTTCATGCCTTGCTCCTAGCAGGAATATTGGGGTGTTGGATGGAACGGGCCCAAGTATCGGCAGGCCGCATGAATACGATATGACTTCATTGTGACAATTGGATGAAAGGCCATCACTGGAAGCAGGTCTGGCCTCTTCGCGGCTAAAGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/6077730‑6077900‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggcctcttcgcggctaaagccgCTCCTACAGGTTAGGTGTCGGCCTTGAGGCCTGTGCAAACCCCCTGTAGGAACGGCTTTAGCCGCGAAGAGGCCAGACCT‑GCTTCCAGTGATGGCCTTTCATCCAATTGTCACAATGAAGTCATATCGTATTCATGCGGCCTGCCGA < NC_002947/6077952‑6077806 CCGCCATCAAACGCTTCAGTTTCATGCCTTGCTCCTAGCAGGAATATTGGGGTGTTGGATGGAACGGGCCCAAGTATCGGCAGGCCGCATGAATACGATATGACTTCATTGTGACAATTGGATGAAAGGCCATCACTGGAAGCAGGTCTG > 2:1614719/1‑150 TCAAACGCTTCAGTTTCATGCCTTGCTCCTAGCAGGAATATTGGGGTGTTGGATGGAACGGGCCCAAGTATCGGCAGGCCGCATGAATACGATATGACTTCATTGTGACAATTGGATGAAAGGCCATCACTGGAAGCAGGTCTGGCCTCT > 2:1257551/1‑150 AAACGCTTCAGTTTCATGCCTTGCTCCTAGCAGGAATGTTGGGGTGTTGGATGGAACGGGCCCAAGTATCGGCAGGCCGCATGAATACGATATGACTTCATTGTGACAATTGGATGAAAGGCCATCACTGGAAGCAGGTCTGGCCTCTTC > 2:1564684/1‑150 AACGCTTCAGTTTCATGCCTTGCTCCTAGCAGGAATATTGGGGTGTTGGATGGAACGGGCCCAAGTATCGGCAGGCCGCATGAATACGATATGACTTCATTGTGGCAATTGGATGAAAGGCCATCACTGGAAGCAGGTCTGGCCTCTTCG > 2:1159015/1‑150 ACGCTTCAGTTTCATGCCTTGCTCCTAGCAGGAATATTGGGGTGTTGGATGGAACGGGCCCAAGTATCGGCAGGCCGCATGAATACGATATGACTTCATTGTGACAATTGGATGAAAGGCCATCACTGGAAGCAGGTCTGGCCTCTTCGC < 2:547145/150‑1 GCTTCAGTTTCATGCCTTGCTCCTAGCAGGAATATTGGGGTGTTGGATGGAACGGGCCCAAGTATCGGCAGGCCTCATGAATACGATATGACTTCATTGTGACAATTGGATGAAAGGCCATCACTGGAAGCAGGTCTGGCCTCTTCGCGG < 1:601232/150‑1 TTCAGTTTCATGCCTTGCTCCTAGCAGGAATATTGGGGTGTTGGATGGAACGGGCCCAAGTATCGGCAGGCCGCATGAATACGATATGACTTCATTGTGACAATTGGATGAAAGGCCATCACTGGAAGCAGGTCTGGCCTCTTCGCGGCT > 2:360226/1‑150 TCAGTTTCATGCCTTGCTCCTAGCAGGAATATTGGGGTGGTGGATGGAACGGGCCCAAGTATCGGCAGGCCGCATGAATACGATATGACTTCATTGTGACAATTGGATGAAAGGCCATCACTGGAAGCAGGTCTGGCCTCTTCGCGGCTA > 1:1186197/1‑150 CAGTTTCATGCCTTGCTCCTAGCAGGAATATTGGGGTGTTGGATGGAACGGGCCCAAGTATCGGCAGGCCGCATGAATACGATATGACTTCATTGTGACAATTGGATGAAAGGCCATCACTGGAAGCAGGTCTGGCCTCTTCGCGGCTAA > 1:572001/1‑150 AGTTTCATGCCTTGCTCCTAGCAGGAATATTGGGGTGTTGGATGGAACGGGCCCAAGTATCGGCAGGCCGCATGAATACGATATGACTTCATTGTGACAATTGGATGAAAGGCCATCACTGGAAGCAGGTCTGGCCTCTTCGCGGCTAAA < 1:142414/150‑1 TTTCATGCCTTGCTCCTAGCAGGAATATTGGGGTGTTGGATGGAACGGGCCCAAGTATCGGCAGGCCGCATGAATACGATATGACTTCATTGTGACAATTGGATGAAAGGCCATCACTGGAAGCAGGTCTGGCCTCTTCGCGGCTAAAGC > 2:424454/1‑150 ACGGGCCCAAGTATCGGCAGGCCGCATGAATACGATATGACTTCATTGTGACAATTGGATGAAAGGCCATCACTGGAAGCAGGTCTGG > 2:62104/1‑88 ACGGGCCCAAGTATCGGCAGGCCGCATGAATACGATATGACTTCATTGTGACAATTGGATGAAAGGCCATCACTGGAAGCAGGTCTGG < 1:62104/88‑1 CGGCAGGCCGCATGAATACGATATGACTTCATTGTGACAATTGGATGAAAGGCCATCACTGGAAGCAGGTCTGGCCTCTTCGCGGCTAAAGCCGCTCCTACAGGTTAGGTGTCGGCCTTGAGGCCTGTGCAAACCCCCTGTAGGAACGGC < 1:1257551/150‑1 CGCATGAATACGATATGACTTCATTGTGACAATTGGATGAAAGGCCATCACTGGAAGCAGGTCTGGCCTCTTCGCGG < 1:1878634/77‑1 CGCATGAATACGATATGACTTCATTGTGACAATTGGATGAAAGGCCATCACTGGAAGCAGGTCTGGCCTCTTCGCGG > 2:1878634/1‑77 GTGACAATTGGATGAAAGGCCATCACTGGAAGCAGGTCTGGCCTCTTCGCGGCTAAAGCCGCTCCTACAGGTTAGGTGTCGGCCTTGAGGCCTGTGCAAACCCCCTGTAGGAAC < 1:867784/114‑1 GTGACAATTGGATGAAAGGCCATCACTGGAAGCAGGTCTGGCCTCTTCGCGGCTAAAGCCGCTCCTACAGGTTAGGTGTCGGCCTTGAGGCCTGTGCAAACCCCCTGTAGGAAC > 2:867784/1‑114 TGGCCTCTTCGCGGCTAAAGCCGCTCCTACAGGTTAGGTGTCGGCCTTGAGGCCTGTGCAAACCCCCTGTAGGAACGGCTTTAGCCGCGAAGAGGCCAGACCT‑GCTTCCAGTGATGGCCTTTCATCCAATTGTCACAATGAAGTCATATC > 1:1833960/1‑150 TGGCCTCTTCGCGGCTAAAGCCGCTCCTACAGGTTAGGTGTCGGCCTTGAGGCCTGTGCAAACCCCCTGTAGGAACGGCTTTAGCCGCGAAGAGGCCAGACCT‑GCTTCCAGTGATGGC > 1:1718771/1‑118 TGGCCTCTTCGCGGCTAAAGCCGCTCCTACAGGTTAGGTGTCGGCCTTGAGGCCTGTGCAAACCCCCTGTAGGAACGGCTTTAGCCGCGAAGAGGCCAGACCT‑GCTTCCAGTGATGGC < 2:1718771/118‑1 TGGCCTCTTCGCGGCTAAAGCCGCTCCTACAGGTTAGGTGTCGGCCTTGAGGCCTGTGCAAACCCCCTGTAGGAAAGGCTGTAGCCGCGAAGAGGCCAGACCTAGCGCATGGTGA‑GTCCGTTCATCCAATTGTCACAATGAAGTCATATC > 1:424454/1‑150 GCCTCTTCGCGGCTAAAGCCGCTCCTACAGGTTAGGTGTCGGCCTTGAGGCCTGTGCAAACCCCCTGTAGGAACGGCTTTAGCCGCGAAGAGGCCAGACCT‑GCTCCCAGTGATGGCCTTTCATCCAATTGTCACAATGAAGTCATATCGT > 1:1411259/1‑150 TCTTCGCGGCTAAAGCCGCTCCTACAGGTTAGGTGTCGGCCTTGAGGCCTGTGCAAACCCCCTGTAGGAACGGCTTTAGCCGCGAAGAGGCCAGACCT‑GCTTCCAGTGATTGCCTTTCATCCAATTGTCACAATGAAGTCATATCGTATT > 2:626533/1‑150 TCTTCGCGGCTAAAGCCGCTCCTACAGGGTAGGTGTCGGCCTTGAGGCCTGTGCAAACCCCCTGTAGGAACGGCTTTAGCCGCGAAGATGCCAGACCT‑GCTTCCAGTTATGGCCTTTCATCCAATTGTCACAATGAAGTCATATCGTATT > 2:397826/1‑150 CTTCGCGGCTAAAGCCGCTCCTACAGGTTAGGTGTCGGCCTTGAGGCCTGTGCAAACCCCCTGTAGGAACGGCTTTAGCCGCGAAGAGGCCAGACCT‑GCTTCCAGTGATGGCCTTTCATCCAATTGTCACAATGAAGTCATATCGTATTC < 2:744763/150‑1 TTCGCGGCTAAAGCCGCTCCTACAGGTTAGGTGTCGGCCTTGAGGCCTGTGCAAACCCCCTGTAGGAACGGCTTTAGCCGCGAAGAGGCCAGACCT‑GCTTCCAGTGATGGCCTTTCATCCAATTGTCACAATGAAGTCATATCGTATTCA > 1:238036/1‑150 TCGCGGCTAAAGCCGCTCCTACAGGTTAGGTGTCGGCCTTGAGGCCTGTGCAAACCCCCTGTAGGAACGGCTTTAGCCGCGAAGAGGCCAGACCT‑GCTTCCAGTGATGGCCTTTCATCCAATTGTCACAATGAAGTCATATCGTATTCAT < 2:1835775/150‑1 CGCGGCTAAAGCCGCTCCTACAGGTTAGGTGTCGGCCTTGAGGCCTGTGCAAACCCCCTGTAGGAACGGCTTTAGCCGCGAAGAGGCCAGACCT‑GCTTCCAGTGATGGCCTTTCATCCAATTGTCACAATGAAGTCATATCGTATTCATG < 1:1191114/150‑1 GCGGCTCACGCCGCTCCTCCAGGTTAGGTGTCGGCCTTGAGGCCTGTGCAAACCCCCTGTAGGAACGGCTTTAGCCGCGAAGAGGCCAGACCT‑GCTCCCAGTGATGGCCTTTCATCCAATTGTCACAATGAAGTCATATCGTATTCATGC < 2:1411259/150‑1 CGGCTAAAGCCGCTCCTACAGGTTAGGTGTCGGCCTTGAGGCCTGTGCAAACCCCCTGTAGGAACGGCTTTAGCCGCGAAGAGGCCAGACCT‑GCTTCCAGTGATGGCCTTTCATCCAGTTGTCACAATGAAGTCATATCGTATTCATGCG > 2:362834/1‑150 CCGCTCCTACAGGTTAGGTGTCGGCCTTGAGGCCTGTGCAAACCCCCTGTAGGAACGGCTTTAGCCGCGAAGAGGCCAGACCT‑GCTTCCAGTGATGGCCTTTCATCCAATTGTCACAATGAAGTCATATCGTATTCATGCGGCCTGCCGA > 2:1592927/1‑150 CCGCCATCAAACGCTTCAGTTTCATGCCTTGCTCCTAGCAGGAATATTGGGGTGTTGGATGGAACGGGCCCAAGTATCGGCAGGCCGCATGAATACGATATGACTTCATTGTGACAATTGGATGAAAGGCCATCACTGGAAGCAGGTCTGGCCTCTTCGCGGCTAAAGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/6077730‑6077900‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggcctcttcgcggctaaagccgCTCCTACAGGTTAGGTGTCGGCCTTGAGGCCTGTGCAAACCCCCTGTAGGAACGGCTTTAGCCGCGAAGAGGCCAGACCT‑GCTTCCAGTGATGGCCTTTCATCCAATTGTCACAATGAAGTCATATCGTATTCATGCGGCCTGCCGA < NC_002947/6077952‑6077806 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |