| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2063203 = | 21 (0.280) | 8 (0.130) | 8/204 | NT | 28.6% | intergenic (+17/‑190) | PP_1838/PP_1839 | membrane protein/hypothetical protein |
| ? | NC_002947 | 2063297 = | 23 (0.380) | intergenic (+111/‑96) | PP_1838/PP_1839 | membrane protein/hypothetical protein | |||||
GAGTTCAAGGCCGAACTGATCGAAAGCCCGGACCAGCCGGAAATGCTCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGC > NC_002947/2063055‑2063352 | atgcggacggttcgcccttctggtcggcaaaaatgacttcccactctttcattgaacggaccctctcagtcaacgaacaccaggtgtgtgatgcctgaataactgaccttggggcggggataatgttcagtccgggaaaattgtgcgggg > 1:1480065‑M1/149‑150 (MQ=255) aGTTCAAGGCCGAACTGATCGAAAGCCCGGACCAGCCGGAAATGCTCAAGAAGCTGGAAGCGTATATCCAGACCGCAAAATCTATTCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGC > 1:1553634‑M1/1‑150 (MQ=255) aaGGCCGAACTGATCGAAAGCCCGGACCAGCCGGAAATGCTCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCTCCGGCGTGGTGCACGGCACCACGAAGTACACCGGGGCCGCGGTGCGGCCCATT > 2:109021‑M1/1‑150 (MQ=255) cggttcgcccttctggtcggcaaaaatgacttcccactctttcattgaacggaccctctcagtcaacgaacaccaggtgtgtgatgcctgaataactgaccttggggcggggataatgttcagtccgggaaaattgtgcggGGCCCATTc > 2:141483‑M1/142‑150 (MQ=255) gCCGAACTGATCGAAAGCCCGGACCAGCCGGAAATGCTCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGC > 1:203526‑M1/1‑150 (MQ=255) tcgcccttctggtcggcaaaaatgacttcccactctttcattgaacggaccctctcagtcaacgaacaccaggtgtgtgatgcctgaataactgaccttggggcggggataatgttcagtccgggaaaattgtgcggGGCCCATTCGCgg > 2:1633154‑M1/138‑150 (MQ=255) cGAACTGATCGACAGCCCGGACCAGCCGGAAATGCTCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATACCACCGCCGGCGTAGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGG < 2:1052244‑M1/150‑1 (MQ=255) aCTGATCGAAAGCCCGGACCAGCCGGAAATGCTCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCT < 1:553313‑M1/150‑1 (MQ=255) cttctggtcggcaaaaatgacttcccactctttcattgaacggaccctctcagtcaacgaacaccaggtgtgtgatgcctgaataactgaccttggggcggggataatgttcagtccgggaaaattgtgcggGGCCCATTCGCGGGCTTg < 1:955516‑M1/18‑1 (MQ=255) ttctggtcggcaaaaatgacttcccactctttcattgaacggaccctctcagtcaacgaacaccaggtgtgtgatgcctgaataactgaccttggggcggggataatgttcagtccgggaaaattgtgcggGGCCCATTCGCGGGCTTGc > 1:906752‑M1/132‑150 (MQ=255) tCGAAAGCCCGGACCAGCCGGAAATGCTCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCC > 1:1713433‑M1/1‑150 (MQ=255) gcggcaaaaatgacttcccactctttcattgaacggaccctctcagtcaacgaacaccaggtgtgtgatgcctgaataactgaccttggggcggggataatgttcagtccgggaaaattgtgcggGGCCCATTCGCGGGCAAGCCcgcga > 2:469125‑M1/126‑148 (MQ=255) cGGACCAGCCGGAAATGCTCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTACcaca < 2:653702/150‑1 (MQ=255) ggACCAGCCGGAAATGCTCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAg < 2:752221/150‑1 (MQ=255) aGCCGGAAATGCTCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCAtt < 2:203526/150‑1 (MQ=255) ccGGAAATGCTCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGc > 2:1756607/1‑150 (MQ=255) gAAATGCTCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGcaca < 1:1826465/150‑1 (MQ=255) cccactctttcattgaacggaccctctcagtcaacgaacaccaggtgtgtgatgcctgaataactgaccttggggcggggataatgttcagtccgggaaaattgtgcggGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGcaca > 1:616223‑M1/110‑150 (MQ=255) aTGCTCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAggg < 1:310489/150‑1 (MQ=255) tCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCg > 2:1373908/1‑150 (MQ=255) tCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGG > 1:842235‑M1/1‑115 (MQ=255) tCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGG < 2:842235‑M1/115‑1 (MQ=255) agaagCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGAc < 1:384208/150‑1 (MQ=255) agaagCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGAc < 1:1284323/150‑1 (MQ=255) gaagCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGC < 2:1905637‑M1/101‑1 (MQ=255) gaagCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGC > 1:1905637‑M1/1‑101 (MQ=255) attgaacggaccctctcagtcaacgaacaccaggtgtgtgatgcctgaataactgaccttggggcggggataatgttcagtccgggaaaattgtgcggGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGAcc < 2:1006222‑M1/52‑1 (MQ=255) tgaacggaccctctcagtcaacgaacaccaggtgtgtgatgcctgaataactgaccttggggcggggataatgttcagtccgggaaaattgtgcggGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCtt > 1:1230688‑M1/97‑150 (MQ=255) aaGCGTATATCCAGACCGCTACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAg < 1:293601/150‑1 (MQ=255) cGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCgcacaggacctgcacaaggtccgaaccctgtgcaatgc < 2:501025‑M1/150‑39 (MQ=255) gTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTcc < 1:1373908/150‑1 (MQ=255) tataTCCAGACCGCGACCAAGAGCCTGTTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCgcacaggacctgcacaaggtccgaaccctgtgcaatgcct < 2:1235523‑M1/150‑41 (MQ=255) tataTCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAg < 2:1464518/116‑1 (MQ=255) tataTCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAg > 1:1464518/1‑116 (MQ=255) tataTCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCt < 1:1215735/150‑1 (MQ=255) atatCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCCCACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCtg < 1:1756607/150‑1 (MQ=255) atatCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCtg < 2:266059/150‑1 (MQ=255) atatCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCtg < 2:1210335/150‑1 (MQ=255) tcaacgaacaccaggtgtgtgatgcctgaataactgaccttggggcggggataatgttcagtccgggaaaattgtgcggGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGa > 1:1006222‑M1/80‑150 (MQ=255) cAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCga < 1:792710‑M2/150‑3 (MQ=255) aacgaacaccaggtgtgtgatgcctgaataactgaccttggggcggggataatgttcagtccgggaaaattgtgcggGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGc > 1:1193436‑M1/78‑150 (MQ=255) ccGNGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCgcacaggacctgcacaaggtccgaaccctgt > 2:1199795‑M1/1‑100 (MQ=255) ccGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCgcacaggacctgcacaaggtccgaaccctgtgcaatgcctgtgggagcgg < 2:1713433‑M1/150‑51 (MQ=255) ccGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCgcacaggacctgcacaaggtccgaaccctgt < 1:1199795‑M1/131‑32 (MQ=255) ccGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCgagcgg > 1:385733‑M2/1‑144 (MQ=255) acaccaggtgtgtgatgcctgaataactgaccttggggcggggataatgttcagtccgggaaaattgtgcggGGCCCATTTGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCa < 2:431859‑M1/78‑1 (MQ=255) gACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCgagcgggcaa > 2:200099‑M2/1‑140 (MQ=255) aCCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGcaca < 1:221015/111‑1 (MQ=255) aCCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGcaca > 2:221015/1‑111 (MQ=255) aaGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGAGGCCGCGTTGCGGCCCATTCGC > 1:428543‑M1/1‑78 (MQ=255) aaGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGAGGCCGCGTTGCGGCCCATTCGC < 2:428543‑M1/78‑1 (MQ=255) gagCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCgcacagga < 1:624851‑M1/98‑9 (MQ=255) gagCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCgcacagga > 2:624851‑M1/1‑90 (MQ=255) tgatgcctgaataactgaccttggggcggggataatgttcagtccgggaaaattgtgcggGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAg < 2:1614478‑M1/72‑1 (MQ=255) tgatgcctgaataactgaccttggggcggggataatgttcagtccgggaaaattgtgcggGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAg > 1:1614478‑M1/61‑132 (MQ=255) tgGATACCACCCCCGCCGTGGTGCACGGCACACCGAAGTAAACCGGGCCCGCCTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCgagcgggcaagcccgcgaatgggc > 1:109021‑M2/1‑126 (MQ=255) tAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTC > 2:1492872‑M1/1‑78 (MQ=255) tAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTC < 1:1492872‑M1/78‑1 (MQ=255) cacCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTAGCCCGGTCCCACGCGCATTGCACAGGGGTCGGGCCCTGTGCAGGACCTGTGCGCGCGGGCAAGCCCGCGAAGAGGCCCCGcac > 2:1003292/1‑150 (MQ=255) ttggggcggggataatgttcagtccgggaaaattgtgcggGGCCCATTc > 1:1772752‑M1/41‑49 (MQ=255) ttggggcggggataatgttcagtccgggaaaattgtgcggGGCCCATTc < 2:1772752‑M1/9‑1 (MQ=255) cGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCTCGCACAATTTTCCCGGACTGAACATTATccc > 2:474734/1‑150 (MQ=255) gTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCAtt > 1:1078257/1‑41 (MQ=255) gTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCAtt < 2:1078257/41‑1 (MQ=255) GGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGc > 1:474734‑M1/1‑150 (MQ=255) | GAGTTCAAGGCCGAACTGATCGAAAGCCCGGACCAGCCGGAAATGCTCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACAGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCAAGGTCAGTTATTCAGGC > NC_002947/2063055‑2063352 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |