| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4886209 | 16 (0.210) | 7 (0.120) | 5/196 | NT | 32.3% | intergenic (+43/+80) | PP_4295/PP_4296 | TetR family transcriptional regulator/hypothetical protein |
| ? | NC_002947 | = 4886238 | 17 (0.300) | intergenic (+72/+51) | PP_4295/PP_4296 | TetR family transcriptional regulator/hypothetical protein | |||||
GCGGTGACCGGTAAGGCCAAGCTGGCCGACAGTGATTATGACGCGGCGGCCGAGACCATCATTCGTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGCTCGT > NC_002947/4886065‑4886356 | gCGGTGACCGGTAAGGCCAAGCTGGCCGACAGTGATTATGACGCGGCGGCCGAGACCATCATTCGTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATcac < 2:1847123/150‑1 (MQ=255) ggTGACCGGTAAGGCCAAACTGGCCGACAGTGATTATGACGCGGCGGCCGAGACCATCATTCGTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGTGCCATTCGCGGGCAAGCCCGCGCCCACAGGATcacca > 2:666213/1‑150 (MQ=255) gTGACCGGTAAGGCCAAGCTGGCCGACAGTGATTATGACGCGGCGGCCGAGACCATCATTCGTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATcaccac < 2:1045369/150‑1 (MQ=255) gACCGGTAAGGCCAAGCTGGCCGACAGTGATTATGACGCGGCGGCCGAGACCATCATTCGTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACAt < 1:1438318/150‑1 (MQ=255) ggTAAGGCCAAGCTGGCCGACAGTGATTATGACGCGGCGGCCGAGACCATCATTCGTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCt < 1:184869/150‑1 (MQ=255) tAAGGCCAAGCTGGCCGACAGTGATTATGACGCGGCGGCCGAGACCATCATTCGTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGa > 2:402192/1‑150 (MQ=255) aGGCCAAGCTGGCCGACAGTGATTATGACGCGGCGGCCGAGACCATCATTCGTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAg < 1:1512083/150‑1 (MQ=255) gACAGTGATTATGACGCGGCGGCCGAGACCATCATTCGTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCcct > 1:1818754‑M2/1‑147 (MQ=255) cAGTGATTATGACGCGGCGGCCGAGACCATCATTCGTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCcctgt > 1:402192‑M2/1‑145 (MQ=255) aGTGATTATGACGCGGCGGCCGAGACCATCATTCGTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGgactccacaaccttcaggcatgtggtgatcctgtg < 1:602610‑M1/150‑36 (MQ=255) aGTGATTATGACGCGGCGGCCGAGACCATCATTCGTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATcac > 2:709425/1‑120 (MQ=255) aGTGATTATGACGCGGCGGCCGAGACCATCATTCGTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATcac < 1:709425/120‑1 (MQ=255) gTGATTAGGACGCGGCGGCCGAGACCATCATTCGTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCcctgtgg > 2:1239066‑M2/1‑143 (MQ=255) gATTATGCCGCGGCGGCCGAGACCATCATTCGTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCcctgtggga > 1:197073‑M2/1‑141 (MQ=255) aTGACGCGGCGGCCGAGACCATCATTCGTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCcctgtgggagcgg > 2:397706‑M2/1‑137 (MQ=255) aTGACGCGGCGGCCGAGACCATCATTCGTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGCCCATTCGCGGGCAAGCCCGCTCCCACAGGgactccacaaccttcaggcatgtggtgatcct > 2:783537‑M1/1‑108 (MQ=255) aTGACGCGGCGGCCGAGACCATCATTCGTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGCCCATTCGCGGGCAAGCCCGCTCCCACAGGgactccacaaccttcaggcatgtggtgatcct < 1:783537‑M1/140‑33 (MQ=255) ggcCGAGACCATCATTCGTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGgactccacaaccttcaggcatgtggtgatcctgt < 2:1519445‑M1/132‑35 (MQ=255) ggcCGAGACCATCATTCGTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGgactccacaaccttcaggcatgtggtgatcctgt > 1:1519445‑M1/1‑98 (MQ=255) ccGAGACCATCATTCGTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTtgtg < 2:818566/120‑1 (MQ=255) ccGAGACCATCATTCGTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTtgtg > 1:818566/1‑120 (MQ=255) catcatTCGTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGgactccacaaccttcaggcatgtggtgatcctgt < 2:1006216‑M1/123‑35 (MQ=255) actcattcGTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGgactccacaaccttcaggcatgtggtgatcctgt > 1:1006216‑M1/3‑89 (MQ=255) gaatgatggtcTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCcct > 2:718978‑M2/6‑113 (MQ=255) gaatgatggtcTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCcct < 1:718978‑M2/111‑4 (MQ=255) tGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTtgtg > 2:1565752/1‑102 (MQ=255) tGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTtgtg < 1:1565752/102‑1 (MQ=255) ggTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCaa > 2:78915/1‑139 (MQ=255) ggTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCaa < 1:78915/139‑1 (MQ=255) gTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCcctgtg > 1:1796985‑M2/1‑95 (MQ=255) gTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCcctgtg < 2:1796985‑M2/101‑7 (MQ=255) tgAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTtgtg > 2:659913/1‑86 (MQ=255) tgAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTtgtg < 1:659913/86‑1 (MQ=255) cTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCcct < 1:1275070‑M2/89‑4 (MQ=255) cTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCcct > 2:1275070‑M2/1‑86 (MQ=255) aTTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGa > 2:1924923/1‑150 (MQ=255) cccGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCcctgtgggagcg > 2:531265‑M2/1‑43 (MQ=255) cccGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCcctgtgggagcg < 1:531265‑M2/55‑13 (MQ=255) ccGCTCCCACAGGgactccacaaccttcaggcatgtggtgatcctgtgggagcgggcttgcccgcgaatggcccttcgagatggttcaggctgcctcaggctcacaacctttcaagaccatacgaatgatggtctcggccgccgcgtcat > 2:397706‑M1/1‑13 (MQ=255) cGCTCCCACAGGgactccacaaccttcaggcatgtggtgatcctgtgggagcggg > 2:531265‑M1/1‑12 (MQ=255) cGCTCCCACAGGgactccacaaccttcaggcatgtggtgatcctgtgggagcggg < 1:531265‑M1/55‑44 (MQ=255) tCCCACAGGgactccacaaccttcaggcatgtggtgatcctgtgggagcgggcttgcccgcgaatggcccttcgagatggttcaggctgcctcaggctcacaacctttcaagaccatacgaatgatggtctcggccgccgcggcataatc > 1:197073‑M1/1‑9 (MQ=255) ccACAGGgactccacaaccttcaggcatgtggtgatcctgtgggagcgggcttgcccgcgaatggcccttcgagatggttcaggctgcctcaggctcacaacctttcaagaccatacgaatgatggtctcggccgccgcgtcctaatcac > 2:1239066‑M1/1‑7 (MQ=255) ccACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGc > 1:1337848/1‑150 (MQ=255) cacaGGgactccacaaccttcaggcatgtggtgatcctgtgggagcgggcttgcccgcgaatggcccttcgagatggttcaggctgcctcaggctcacaac < 2:1796985‑M1/101‑96 (MQ=255) cacaGGgactccacaaccttcaggcatgtggtgatcctgtgggagcgggcttgcccgcgaatggcccttcgagatggttcaggctgcctcaggctcacaac > 1:1796985‑M1/1‑6 (MQ=255) cacaGGATCACCACATGCCTGAAGGTTGTGGAGTCcctgtgggagcgggcttgcccgcgaatggcccttcgagatggttcaggctgcctcaggctcacaacctttcaagaccatacgaatgatggtctcggccgccgcgtcataatcact < 1:602610‑M2/150‑116 (MQ=255) acaGGgactccacaaccttcaggcatgtggtgatcctgtgggagcgggcttgcccgcgaatggcccttcgagatggttcaggctgcctcaggctcacaacctttcaagaccatacgaatgatggtctcggccgccgcgtcataatcactg > 1:402192‑M1/1‑5 (MQ=255) acaGGATCACCACATGCCTGAAGGTTGTGGAGTCcctgtgggagcgggcttgcccgcgaatggcccttcgagatggttcaggctgcctcaggctcacaacctttcaagaccatacgaatgatggtctcggcc < 2:1519445‑M2/132‑99 (MQ=255) acaGGATCACCACATGCCTGAAGGTTGTGGAGTCcctgtgggagcgggcttgcccgcgaatggcccttcgagatggttcaggctgcctcaggctcacaacctttcaagaccatacgaatgatggtctcggcc > 1:1519445‑M2/1‑34 (MQ=255) acaGGATCACCACATGCCTGAAGGTTGTGGAGTCcctgtgggagcgggcttgcccgcgaatggcccttcgagatggttcaggctgcctcaggctcacaacctttcaagaccatacgaatgatg < 2:1006216‑M2/123‑90 (MQ=255) acaGGATCACCACATGCCTGAAGGTTGTGGAGTCcctgtgggagcgggcttgcccgcgaatggcccttcgagatggttcaggctgcctcaggctcacaacctttcaagaccatacgaatgagt > 1:1006216‑M2/1‑34 (MQ=255) acaGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGCACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGCtc > 2:1091383/1‑150 (MQ=255) acaGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGCtc > 2:1779641/1‑150 (MQ=255) acaGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGCtc > 1:410426/1‑150 (MQ=255) aGGgactccacaaccttcaggcatgtggtgatcctgtgggagcgggcttgcccgcgaatggcccttcgagatggttcaggctgcctcaggctcacaacctttcaagaccatcattc < 1:718978‑M1/116‑114 (MQ=255) aGGgactccacaaccttcaggcatgtggtgatcctgtgggagcgggcttgcccgcgaatggcccttcgagatggttcaggctgcctcaggctcacaacctttcaagaccatcattc > 2:718978‑M1/1‑3 (MQ=255) aGGgactccacaaccttcaggcatgtggtgatcctgtgggagcgggcttgcccgcgaatggcccttcgagatggttcaggctgcctcaggctcacaacctttcaagaccatacgaatgatggtctcggccgccgcgtcataatcactgtc > 1:1818754‑M1/1‑3 (MQ=255) aGGgactccacaaccttcaggcatgtggtgatcctgtgggagcgggcttgcccgcgaatggcccttcgagatggttcaggctgcctcag < 1:1275070‑M1/89‑87 (MQ=255) aGGgactccacaaccttcaggcatgtggtgatcctgtgggagcgggcttgcccgcgaatggcccttcgagatggttcaggctgcctcag > 2:1275070‑M1/1‑3 (MQ=255) aGGATCACCACATGCCTGAAGGTTGTGGAGTCcctgtgggagcgggcttgcccgcgaatgggccttcgagatggttcaggctgcctcaggctcacaacctttcaagaccatacgaatgatggtctcggccgccgcgtcat < 1:783537‑M2/140‑109 (MQ=255) aGGATCACCACATGCCTGAAGGTTGTGGAGTCcctgtgggagcgggcttgcccgcgaatgggccttcgagatggttcaggctgcctcaggctcacaacctttcaagaccatacgaatgatggtctcggccgccgcgtcat > 2:783537‑M2/1‑32 (MQ=255) aGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGCtcgt > 2:1595969/1‑150 (MQ=255) | GCGGTGACCGGTAAGGCCAAGCTGGCCGACAGTGATTATGACGCGGCGGCCGAGACCATCATTCGTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGCTCGT > NC_002947/4886065‑4886356 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |