New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1025270 =	33 (0.440)	4 (0.070)	3/200	NT	13.3%	intergenic (‑121/+108)	opdP/dppA‑II	glycine‑glutamate dipeptide porin/dipeptide ABC transporter substrate‑binding protein
	?	NC_002947	1025363 =	26 (0.440)					intergenic (‑214/+15)	opdP/dppA‑II	glycine‑glutamate dipeptide porin/dipeptide ABC transporter substrate‑binding protein

CCAGGGGTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTT‑AATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCGGCTGGCTCACGATGGAATGCGCCACCGGCGTAATCGGTACCTGCTGCTTGAGCCG  >  NC_002947/1025216‑1025509                                                                                                                                                    |                                                                                                                                                    ccAGGGGTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGt                                                                                                                                                   >  1:285159/1‑150 (MQ=255)      ggTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCAGGTACTgg                                                                                                                                              <  1:1825693/150‑1 (MQ=255)                 aTCGCCGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTT‑aa                                                                                                                                  <  2:936723/150‑1 (MQ=255)                 aTCGCCGCGACGAACCGGGGCGTTGTGTTGGCCGTTCTCGCCTCTTCGCGGGCAACACCGCTTCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGTCCTCGAAGAGGCCGGTACTGGCTAACGCTT‑aa                                                                                                                                  <  1:1168899/150‑1 (MQ=255)                    gCCGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTT‑AATCa                                                                                                                               >  1:1002488/1‑150 (MQ=255)                     ccGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGCCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTT‑AATCaa                                                                                                                              <  2:1810000/150‑1 (MQ=255)                             aaTCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTT‑AATCAACACTcaca                                                                                                                      <  2:1002488/150‑1 (MQ=255)                                       ttGTGATGGCCGTGCTGGCCTTGTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCTGTGTGCGAACCTGTCGAGTTCATGTGGGGGCGGGCTTGCCCGCGAAGAGACCGGTACTGGCTAACGCTT‑AATCAACACTCACACCGGTAatat                                                                                                            <  2:285159/150‑1 (MQ=255)                                                           tctTCGCGGGCAAGCCCGCCCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGATTGACAGCGCAGCGG‑CGGTAACACCTAAACCTTGAATTATTGCTCACATCGTAAAAATTATTGCGCCCAAACGGGCTg                                                                                        >  2:416322/1‑150 (MQ=255)                                                           TCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTT‑AATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTg                                                                                        <  2:799771‑M1/150‑1 (MQ=255)                                                              gaGCGGGCTTGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGGGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTT‑AATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGAcc                                                                                     <  2:611513‑M1/148‑1 (MQ=255)                                                                      AAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTT‑AATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTg                                                                             <  2:675318‑M1/150‑1 (MQ=255)                                                                       gggCCGCTCCCTCTGGCAGGGCGCAGCGTCCGAACCTGTCGCGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTT‑AATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTgg                                                                            >  2:309509‑M1/4‑150 (MQ=255)                                                                        GCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTT‑AATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTggg                                                                           <  1:283183‑M1/150‑1 (MQ=255)                                                                         cccgctcccacaggatctcgacaggttcggacactgcgccctaccagaggcagagtgcttgcccgcgaagaggccGGTACTGGCTAACGCTT‑AATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGa                                                                          >  1:1078055‑M2/76‑150 (MQ=255)                                                                         CCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTT‑AATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGa                                                                          >  1:799771‑M1/1‑150 (MQ=255)                                                                          ccgctcccacaggatctcgacaggttcggacactgcgccctacctgagggagcgggcttgcccgcgaagaggccGGTACTGGCTAACGCTT‑AATCAACACTCACACCGGAAAAATCAtt                                                                                                        >  1:237348‑M2/75‑119 (MQ=255)                                                                          ccgctcccacaggatctcgacaggttcggacactgcgccctacctgagggagcgggcttgcccgcgaagaggccGGTACTGGCTAACGCTT‑AATCAACACTCACACCGGAAAAATCAtt                                                                                                        <  2:237348‑M2/45‑1 (MQ=255)                                                                          ccgctcccacaggatctcgacaggttcggacactgcgccctacctgagggagcgggcttgcccgcgaagaggccGGTACTGGCTAACGCTT‑AATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGaa                                                                         >  2:992994‑M2/75‑150 (MQ=255)                                                                                CCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTT‑AATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTg                                                                   <  2:542173‑M1/150‑1 (MQ=255)                                                                                  tCAGGAAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTT‑AATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAAACTTGAc                                                                 >  1:867033/1‑150 (MQ=255)                                                                                       tAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCTAAGAGGCCGGTACTGGCTAACGCTT‑AATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTaa                                                            <  1:416322/150‑1 (MQ=255)                                                                                           gcgcAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTT‑AATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCgg                                                        >  1:293769/1‑150 (MQ=255)                                                                                           gcgcAGTGTCCGAACCTGTCGAGATCCTGCTGTAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTT‑AATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCgg                                                        >  1:50711/1‑150 (MQ=255)                                                                                            cgcAGTGTCCGATCCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTT‑AATCACCACTCACCCCGGAAAACTCAATGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCggc                                                       <  2:1056676/150‑1 (MQ=39)                                                                                             gcAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTT‑AATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAAcc                                                                      <  1:1193480/134‑1 (MQ=255)                                                                                             gcAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTT‑AATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAAcc                                                                      >  2:1193480/1‑134 (MQ=255)                                                                                             gcAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTT‑AATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCggct                                                      >  1:1065474/1‑150 (MQ=255)                                                                                                   tCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTT‑AATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCt                                                                     <  2:121131/129‑1 (MQ=255)                                                                                                   tCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTT‑AATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCt                                                                     >  1:121131/1‑129 (MQ=255)                                                                                                      gAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTT‑AATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGa                                                                  <  2:1248998/129‑1 (MQ=255)                                                                                                      gAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTT‑AATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGa                                                                  >  1:1248998/1‑129 (MQ=255)                                                                                                      gAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTT‑AATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCGGCTGGCTCACGa                                             >  1:1679763/1‑150 (MQ=255)                                                                                                            gTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTT‑AATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCGGCTGGCTCACGATGGAAt                                       >  2:1472318/1‑150 (MQ=255)                                                                                                               gagaTCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTT‑AATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCGGCTGGCTCACGATGGAATgcg                                    >  2:1438539/1‑150 (MQ=255)                                                                                                                  aTCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTT‑AATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGaa                                                                         >  2:1503229/1‑110 (MQ=255)                                                                                                                  aTCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTT‑AATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGaa                                                                         <  1:1503229/110‑1 (MQ=255)                                                                                                                   tCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTT‑AATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCGGCTGGCTCACGATGGAATGCGCCAc                                >  1:1126529/1‑150 (MQ=255)                                                                                                                    ccTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTT‑AATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCGGCTGGCTCACGATGGAATGCGCCAcc                               >  1:40888/1‑150 (MQ=255)                                                                                                                     cTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTT‑AATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCggc                                                       <  1:828571/125‑1 (MQ=255)                                                                                                                     cTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTT‑AATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCggc                                                       >  2:828571/1‑125 (MQ=255)                                                                                                                       gtgGGCGCGGACTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTT‑AATCAACCCTAACACCTGAGCAGTCAGTGCGCACAAACGGGCTGACCTTGAACTGGGACACCTTGACGCTAAGCGGCTGGCTCACGATGGAATGCGCCACCGGc                            <  1:611513/150‑1 (MQ=255)                                                                                                                       gtgGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTT‑AATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCGGCTGGCTCACGATGGAATGCGCCACCGGc                            >  2:1922317/1‑150 (MQ=255)                                                                                                                        tgGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTT‑AATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCGGCTGGCTCACGATGGAATGCGCCACCGGCg                           >  1:871009/1‑150 (MQ=255)                                                                                                                        tgGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTT‑AATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCGGCTGGCTCACGATGGAATGCGCCACCGGCg                           >  1:377744/1‑150 (MQ=255)                                                                                                                          ggagcgggcttgcccgcgaagaggccGGTACTGGCTAACGCTT‑AATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCGGCTGGCTCACGATGGAATGCGCCACCGGCGTa                         >  2:1166687‑M2/27‑150 (MQ=255)                                                                                                                                 gcttgcccgcgaagaggccGGTACTGGCTAACGCTT‑AATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCGGCTGGCTCACGATGGAATGCGCCACCGGCGTAATCGGTa                  <  2:293769‑M2/131‑1 (MQ=255)                                                                                                                                       ccgcgaagaggccGGTACTGGCTAACGCTT‑AATCAACACTca                                                                                                                        >  2:1683592‑M2/14‑42 (MQ=255)                                                                                                                                       ccgcgaagaggccGGTACTGGCTAACGCTT‑AATCAACACTca                                                                                                                        <  1:1683592‑M2/29‑1 (MQ=255)                                                                                                                                       ccgcgaagaggccGGTACTGGCTAACGCTT‑AATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCGGCTGGCTCACGATGGAATgcgc                                   <  1:1381818‑M2/114‑1 (MQ=255)                                                                                                                                       ccgcgaagaggccGGTACTGGCTAACGCTT‑AATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCGGCTGGCTCACGATGGAATgcgc                                   >  2:1381818‑M2/14‑127 (MQ=255)                                                                                                                                       ccgcgaagaggccGGTACTGGCTAACGCTT‑AATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCGGCTGGCTCACGATGGAATGCGCCACCGGCGTAATCGGTACctgct            >  1:125488‑M2/14‑150 (MQ=255)                                                                                                                                                 gccGGTACTGGCTAACGCTT‑AATCAACACTCACACCGGAAAAATCATTgcgc                                                                                                    >  1:1509358‑M2/4‑52 (MQ=255)                                                                                                                                                 gccGGTACTGGCTAACGCTT‑AATCAACACTCACACCGGAAAAATCATTgcgc                                                                                                    <  2:1509358‑M2/49‑1 (MQ=255)                                                                                                                                                 gccGGTACTGGCTAACGCTT‑AATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCGGCTGGCTCACGATGGAATGCGCCACCGGCGTAATCGGTACCTGCTGCTTGAGCCg  <  1:542173‑M2/147‑1 (MQ=255)                                                                                                                                                   cGGTACTGGCTAACGCTT‑AATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAAc                                                                       >  1:144094‑M2/2‑79 (MQ=255)                                                                                                                                                   cGGTACTGGCTAACGCTT‑AATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAAc                                                                       <  2:144094‑M2/78‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                    CCAGGGGTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTT‑AATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCGGCTGGCTCACGATGGAATGCGCCACCGGCGTAATCGGTACCTGCTGCTTGAGCCG  >  NC_002947/1025216‑1025509

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.