New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1487013 =	17 (0.230)	7 (0.120)	4/194	NT	38.9%	intergenic (+22/+108)	yhdZ/degS	amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS
	?	NC_002947	1487103 =	9 (0.160)					intergenic (+112/+18)	yhdZ/degS	amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS

AGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGT‑GGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGTTATCTTCTCGTTGGGCTTGATCCGCGCTACCT  >  NC_002947/1486974‑1487251                                                                                                                                  |                                                                                                                                                      aGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTa                                                                                                                                   >  2:897324/1‑150 (MQ=255)                                            TTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGT‑GGCGGCCGCAGc                                                                                       <  2:1338429‑M1/150‑1 (MQ=255)                                                   GCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCNGCGTAANTCCTGTGGGAGCGGGCGTGCCCGCGAATGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGT‑GGCGGCCGCAGCCCCACCt                                                                                <  1:1597992‑M1/150‑1 (MQ=255)                                                             TCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGT‑GGCGGCCGCAGCCCCACCTCGGCGATCAg                                                                      <  2:134998‑M1/150‑1 (MQ=255)                                                               ccacaggaattacgcaggctccaaagccagcgctaaacctgtgggagcgggcgtgcccgcgaagggcTGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGT‑GGCGGCCGCAGCCCCACCTCGGCGATCAGCt                                                                    >  2:1540850‑M2/68‑150 (MQ=255)                                                               ccacaggaattacgcaggctccaaagccagcgctaaacctgtgggagcgggcgtgcccgcgaagggcTGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGT‑GGCGGCCGCAGCCCCACCTCGGCGATCAGCt                                                                    >  1:1460092‑M2/68‑150 (MQ=255)                                                               ccacaggaattacgcaggctccaaagccagcgctaaacctgtgggagcgggcgtgcccgcgaagggcCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGT‑GGCGGCCGCAGCCCCACCTCGGCGATCAGCt                                                                    >  2:1489840‑M2/68‑150 (MQ=255)                                                               CCACAGGTTTAGCGCTGGCTTTGGGGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGT‑GGCGGCCGCAGCCCCACCTCGGCGATCAGCt                                                                    <  1:101876‑M1/150‑1 (MQ=255)                                                               CCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGT‑GGCGGCCGCAGCCCCACCTCGGCGATCAGCt                                                                    <  2:291122‑M1/150‑1 (MQ=255)                                                                cacaggaattacgcaggctccaaagccagcgctaaacctgtgggagcgggcgtgcccgcgaagggcCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGT‑GGCGGCCGCAGCCCCACCTTGGCGATCAGCtt                                                                   >  1:390474‑M2/67‑150 (MQ=255)                                                                cacaggaattacgcaggctccaaagccagcgctaaacctgtgggagcgggcgtgcccgcgaagggcCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGT‑GGCGGCCGCAGCCCCACCTCGGCGATCAGCtt                                                                   >  2:1148454‑M2/67‑150 (MQ=255)                                                                CACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGAAGCGGGCGTGCCCGCGAATGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGT‑GGCGGCCGCAGCCCCACCTCGGCGATCCGCtt                                                                   <  2:763475‑M1/150‑1 (MQ=255)                                                                     GTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCTGT‑GGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACt                                                              <  2:539458‑M1/150‑1 (MQ=255)                                                                        tAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGT‑GGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAActgct                                                           <  2:1761565/150‑1 (MQ=255)                                                                              aggctccaaagccagcgctaaacctgtgggagcgggcgtgcccgcgaagggcCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGT‑g                                                                                                  <  1:1490951‑M2/53‑1 (MQ=255)                                                                              aggctccaaagccagcgctaaacctgtgggagcgggcgtgcccgcgaagggcCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGT‑g                                                                                                  >  2:1490951‑M2/53‑105 (MQ=255)                                                                                gCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGT‑GGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTg                                                   >  1:1816303/1‑150 (MQ=255)                                                                                  tttGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGT‑GGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAActgctg                                                          <  1:1179109/141‑1 (MQ=255)                                                                                  tttGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGT‑GGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAActgctg                                                          >  2:1179109/1‑141 (MQ=255)                                                                                       aGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGT‑GGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCa                                            >  1:1104185/1‑150 (MQ=255)                                                                                         ccTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCctggctg                                                                                                                   <  1:248356/78‑1 (MQ=255)                                                                                         ccTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCctggctg                                                                                                                   >  2:248356/1‑78 (MQ=255)                                                                                             cGTAATTCCTGTGGGAACGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGT‑GGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATGACCTCGa                                      >  2:976211/1‑150 (MQ=255)                                                                                                     ctgtgggagcgggcgtgcccgcgaagggcCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGT‑GGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGTTAtc                              >  1:474066‑M2/30‑150 (MQ=255)                                                                                                        tgggagcgggcgtgcccgcgaagggcCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGT‑GGCGGCCGCAGCCCCAc                                                                                  >  1:47733‑M2/27‑95 (MQ=255)                                                                                                        tgggagcgggcgtgcccgcgaagggcCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGT‑GGCGGCCGCAGCCCCAc                                                                                  <  2:47733‑M2/69‑1 (MQ=255)                                                                                                         gggagcgggcgtgcccgcgaagggcCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGT‑GGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCAt                                              <  2:1317788‑M2/105‑1 (MQ=255)                                                                                                         gggagcgggcgtgcccgcgaagggcCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGT‑GGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCAt                                              >  1:1317788‑M2/26‑130 (MQ=255)                                                                                                               gggcgtgcccgcgaagggcCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGT‑GGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGTTATCTTCTCGTTgg                    <  2:1597992‑M2/131‑1 (MQ=255)                                                                                                               gggCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCCAGCT‑GTATCCTGAAATGGTACGCTTTCGCAGCCCCTCCTCTGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGTTATCTTCTCGTTgg                    <  1:134998/150‑1 (MQ=255)                                                                                                                  cgtgcccgcgaagggcCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGT‑GGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGTTATCTTCTCGTTGGGCt                 <  1:1489840‑M2/134‑1 (MQ=255)                                                                                                                      cccgcgaagggcTGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGT‑GGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGTTATCTTCTCGTTGGGCTTGAt             <  1:1540850‑M2/138‑1 (MQ=255)                                                                                                                        cgcgaagggcCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGT‑GGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGTTATCTTCTCGTTGGGCTTGATcc           >  1:646497‑M2/11‑150 (MQ=255)                                                                                                                           ccagggcCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGT‑GGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGTTATCTTCTCGTTGGGCTTGATCcgcg        >  1:582992‑M2/8‑150 (MQ=255)                                                                                                                            aagggcCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGT‑GGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGTTATCTTCTCGTTGGGCTTGATCCgcgc       <  1:1338429‑M2/144‑1 (MQ=255)                                                                                                                                 cCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGT‑GGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGTTATCTTCTCGTTGGGCTTGATCCTCGCTACCt  <  2:474066‑M2/149‑1 (MQ=255)                                                                                                                                 cCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGT‑GGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGTTATCTTCTCGTTGGGCTTGATCCGCGCTACCt  >  2:1838368‑M2/2‑150 (MQ=255)                                                                                                                                  |                                                                                                                                                      AGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGT‑GGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGTTATCTTCTCGTTGGGCTTGATCCGCGCTACCT  >  NC_002947/1486974‑1487251

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.