New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 2301539 =55 (0.740)4 (0.060) 4/226 NT 8.6% intergenic (‑140/‑191) sbcD/PP_5497 exonuclease subunit SbcD/rhs repeat‑associated core domain‑containing protein
?NC_002947 2301624 = 36 (0.540)intergenic (‑225/‑106) sbcD/PP_5497 exonuclease subunit SbcD/rhs repeat‑associated core domain‑containing protein

GCCCGATCGCGGGCAAGCCAGCTCTCATAGAACTGCGCATCACTTACTGATTTAGCAGGGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAATCCAACGCGGTGCATGGCACCGGCTGCGCCGGTGTTCGCGGGCGCGCCCGCTCCCACATGGACCACGCTTGCCTGGCATTTTTGTCAGTTGTCTCGCCGTTGATTGCGGCGGAAAAATTGTGTTCGAGCAAACTACAACTGGCTCACTTGTATGAGGCTAGGCGATGGCGACCTTGGCACAGGTCTATACAGCATACGGGTACTCC  >  NC_002947/2301475‑2301771
                                                                                                                                                     |                                                                                                                                                   
gCCCGATCGCGGGCAAGCCAGCTCTCATAGAACTGCGCATCACTTACTGATTTAGCAGGGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAATCCAACGCGGTGCATGGCACCGGCTGCGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAt                                                                                                                                                     >  2:1905844/1‑150 (MQ=255)
  ccGATCGCGGGCAAGCCAGCTCTCATAGAACTGCGCATCACTTACTGATTTAGCAGGGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAATCCAACGCGGTGCATGGCACCGGCTGCGCCGGTGTTCGCGGGCGCGCCCGCTCCCACATgg                                                                                                                                                   >  1:103682/1‑150 (MQ=255)
  ccGATCGCGGGCAAGCCAGCTCTCATAGAACTGCGCATCACTTACTGATTTAGCAGGGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAATCCAACGCGGTGCATGGCACCGCCTGCGCCGGTGTTCGCGGGCGCGCCCGCTCCCACATgg                                                                                                                                                   <  1:364254/150‑1 (MQ=255)
          gggCAAGCCAGCTCTCATAGAACTGCGCATCACTTACTGATTTAGCAGGGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAATCCAACGCGGTGCATGGCACCGGCTGCGCCGGTGTTCGCGGGCGCGCCCGCTCCCACATGGACCACGCt                                                                                                                                           >  2:1570550/1‑150 (MQ=255)
           ggCAAGCCAGCTCTCATAGAACTGCGCATCACTTACTGATTTAGCAGGGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAATCCAACGCGGTGCATGGCACCGGCTGCGCCGGTGTTCGCGGGCGCGCCCGCTCCCACATGGACCACGCtt                                                                                                                                          <  1:819785/150‑1 (MQ=255)
                gCCAGCTCTCATAGAACTGCGCATCACTTACTGATTTAGCAGGGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAATCCAACGCGGTGCATGGCACCGGCTGCGCCGGTGTTCGCGGGCGCGCCCGCTCCCACATGGACCACGCTTGCCTg                                                                                                                                     <  1:1799298/150‑1 (MQ=255)
                  cAGCTCTCATAGAACTGCGCATCACTTACTGATTTAGCAGGGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAATCCAACGCGGTGCATGGCACCGGCTGCGCCGGTGTTCGCGGGCGCGCCCGCTCCCACATGGACCACGCTTGCCTGGc                                                                                                                                   >  2:604269/1‑150 (MQ=255)
                             gAACTGCGCATCACTTACTGATTTAGCAGGGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAATCCAACGCGGTGCATGGCACCGGCTGCGCCGGTGTTCGCGGGCGCGCCCGCTCCCACATGGACCACGCTTGCCTGGCATTTTTGTCAg                                                                                                                        <  1:1628406/150‑1 (MQ=255)
                               aCTGCGCATCACTTACTGATTTAGCAGGGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAATCCAACGCGGTGCATGGCACCGGCTGCGCCGGTGTTCGCGGGCGCGCCCGCTCCCACATGGACCACGCTTGCCTGGCATTTTTGTCAGtt                                                                                                                      <  2:103682/150‑1 (MQ=255)
                                cTGCGCATCACTTACTGATTTAGCAGGGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAATCCAACGCGGTGCATGGCACCGGCTGCGCCGGTGTTCGCGGGCGCGCCCGCTCCCACATGGACCACGCTTGCCTGGCATTTTTGTCAGTTg                                                                                                                     >  2:1759401/1‑150 (MQ=255)
                                 tGCGCATCACTTACTGATTTAGCAGGGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAATCCAACGCGGTGCATGGCACCGGCTGCGCCGGTGTTCGCGGGCGCGCCCGCTCCCACATGGACCACGCTTGCCTGGCATTTTTGTCAGTTGt                                                                                                                    >  1:171918/1‑150 (MQ=255)
                                    gcATCACTTACTGATTTAGCAGGGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAATCCAACGCGGTGCATGGCACCGGCTGCGCCGGTGTTCGCGGGCGCGCCCGCTCCCACATGGACCACGCTTGCCTGGCATTTTTGTCAGTTGtctc                                                                                                                 >  1:1857115/1‑150 (MQ=255)
                                          cTTACTGATTTAGCAGGGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAATCCAACGCGGTGCATGGCACCGGCTGCGCCGGTGTTCGCGGGCGCGCCCGCTCCCACATGGACCACGCTTGCCTGGCATTTTTGTCAGTTGTCTCGCCGtt                                                                                                           <  1:1213526/150‑1 (MQ=255)
                                          cTTACTGATTTAGCAGGGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAATCCAACGCGGTGCATGGCACCGGCTGCGCCGGTGTTCGCGGGCGCGCCCGCTCCCACATGGACCACGCTTGCCTGGCATTTTTGTCAGTTGTCTCGCCGtt                                                                                                           <  1:1570550/150‑1 (MQ=255)
                                              cggATTTAGCAGGGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAATCCAACGCGGTGCATGGCACCGGCTGCGCCGGTGTTCGCGGGCGCGCCCGCTCCCACATGGACCACGCTTGCCTGGCATTTTTGTCAGTTGTCTCGCCGTTGAtt                                                                                                       <  2:1643605/148‑1 (MQ=255)
                                                        aGGGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAATCCAACGCGGTGCATGGCACCGGCTGCGCCGGTGTTCGCGGGCGCGCCCGCTCCCACATGGACCACGCTTGCCTGGCAttt                                                                                                                               >  2:1625903/1‑116 (MQ=255)
                                                        aGGGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAATCCAACGCGGTGCATGGCACCGGCTGCGCCGGTGTTCGCGGGCGCGCCCGCTCCCACATGGACCACGCTTGCCTGGCAttt                                                                                                                               <  1:1625903/116‑1 (MQ=255)
                                                            aCCCTGTGGGAGCGGGCGTGCCCGTGAAGAATCCAACGCGGTGCATGGCACCGGCTGCGCCGGTGTTCGCGGGCGCGCCCGCTCCCACATGGACCACGCTTGCCTGGCATTTTTGTCAGTTGTCTCGCCGTTGATTGCGGCGGAAAAAtt                                                                                         <  2:965266/150‑1 (MQ=255)
                                                            aCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATCCAACGCGGTGCATGGCACCGGCTGCGCCGGTGTTCGCGGGCGCGCCCGCTCCCACATGGACCACGCTTGCCTGGCATTTTTGTCAGTTGTCTCGCCGTTGATTGCGGCGGAAAAAtt                                                                                         <  1:1905844/150‑1 (MQ=255)
                                                              ccTGTGGGAGCGGGCGTGCCCGCGAAGAATCCAACGCGGTGCATGGCACCGGCTGCGCCGGTGTTCGCGGGCGCGCCCGCTCCCACATGGACCACGCTTGcc                                                                                                                                       >  1:21586/1‑102 (MQ=255)
                                                              ccTGTGGGAGCGGGCGTGCCCGCGAAGAATCCAACGCGGTGCATGGCACCGGCTGCGCCGGTGTTCGCGGGCGCGCCCGCTCCCACATGGACCACGCTTGcc                                                                                                                                       <  2:21586/102‑1 (MQ=255)
                                                               cTGTGGGAGCGGGCGTGCCCGCGAAGAATCCAACGCGGTGCATGGCACCGGCTGCGCCGGTGTTCGCGGGCGCGCCCGCTCCCACATGGACCACGCTTGCCTGGCATTTTTGTCAGTTGTCTCGCCGTTGATTGCGGCGGAAAAATtgtg                                                                                      >  2:1404392/1‑150 (MQ=255)
                                                                  TGGGAGCGGGTGTGCCCGTGAAGAATCCAGCGCTGTGCGTGGCACCGGCTTCGCCGGTGTTCGCGGGCGCGCCCGCTCCCACATGTACCACGCTTGCCTGGCATTTTTGTCAGTTGTCTCGCCGTTGATTGCGGCTTAAAAATTGTGTTc                                                                                   >  2:775822‑M1/1‑150 (MQ=255)
                                                                    GGAGCGGGCGTGCCCGCGAAGAATCCAACGCGGTGCATGGCACCGGCTGCGCCGGTGTTCGCGGGCGCGCCCGCTCCCACATGGACCACGCTTGCCTGGCATTTTTGTCAGTTGTCTCGCCGTTGATTGCGGCGGAAAAATTGTGTTCGa                                                                                 >  1:1433582‑M1/1‑150 (MQ=255)
                                                                      AGCGGGCGTGCCCGCGAAGAATCCAACGCGGTGCATGGCACCGGCTGCGCCGGTGTTCGCGGGCGCGCCCGCTCCCACATGGACCACGCTTGCCTGGCATTTTTGTCAGTTGtctc                                                                                                                 <  2:919896‑M1/116‑1 (MQ=255)
                                                                      AGCGGGCGTGCCCGCGAAGAATCCAACGCGGTGCATGGCACCGGCTGCGCCGGTGTTCGCGGGCGCGCCCGCTCCCACATGGACCACGCTTGCCTGGCATTTTTGTCAGTTGtctc                                                                                                                 >  1:919896‑M1/1‑116 (MQ=255)
                                                                         gggcgcgcccgcgaacaccggcgcagccggtgccatgcaccgcgttggattcttcgcgggcacgcccgctcccacaTGGACCACGCTTGCCTGGCATTTTTGTCAGTTGTCTCGCCGTTGATTGCGGCGGAAAAATTGTGTTCGAGCaaa                                                                            >  2:191770‑M2/77‑150 (MQ=255)
                                                                               gCCCGCGAAGAATCCAACGCGGTGCATGGCACCGGCTGCGCCGGTGTTCGCGGGCGCGCCCGCTCCCACATGGACCACGCTTGCCTGGCATTTTTGTCAGTTGTCTCGCCGTTGATTGCGGCGGAAAAATTGTGTTCGAGCAAACTACaa                                                                      <  2:55229/150‑1 (MQ=255)
                                                                                 ccgcgaacaccggcgcagccggtgccatgcaccgcgttggattcttcgcgggcacgcccgctcccacaTGGACCACGCTTGCCTGGCATTTTTGTCAGTTGTCTCGCCGTTGATTgcgg                                                                                                   >  2:1775887‑M2/69‑119 (MQ=255)
                                                                                 ccgcgaacaccggcgcagccggtgccatgcaccgcgttggattcttcgcgggcacgcccgctcccacaTGGACCACGCTTGCCTGGCATTTTTGTCAGTTGTCTCGCCGTTGATTgcgg                                                                                                   <  1:1775887‑M2/51‑1 (MQ=255)
                                                                                           tCCAACGCGGTGCATGGCACCGGCTGCGCCGGTGTTCGCGGGCGCGCCCGCTCCCACATGGACCACGCTTGCCTGGCATTTTTGTCAGTTGTCTCGCCGTTGATTGCGGCGGAAAAATTGTGTTCGAGCAAACTACAACTGGCTCACTTg                                                          >  2:591111/1‑150 (MQ=255)
                                                                                            ccAACGCGGTGCATGGCACCGGCTGCGCCGGTGTTCGCGGGCGCGCCCGCTCCCACATGGACCACGCTTGCCTGGCATTTTTGTCAGTTGTCTCGCCGTTGATTGCGGCGGAAAAATTGTGTTCGAGCAAACTACAACTGGCTCACTTGt                                                         >  2:482457/1‑150 (MQ=255)
                                                                                             cAACGCGGTGCATGACACCGGCTGCGCCGGTGTTCGCGGGCGCGCCCGCTCCCACATGGACCACGCTTGCCTGGCATTTTTGTCAGTTGTCTCGCCGTTGATTGCGGCGGAAAAATTGTGTTCGAGCAAACTACAACTGGCTCACTTGTa                                                        >  1:1274383/1‑150 (MQ=255)
                                                                                                   ggTGCATGGCACCGGCTGCGCCGGTGTTCGCGGGCGCGCCCGCTCCCACATGGACCACGCTTGCCTGGCATTTTTGTCAGTTGTCTCGCCGTTGATTGCGGCGGAAAAATTGTGTTCGAGCAAACTACAACTGGCTCACTTGTATGAGGc                                                  <  2:722208/150‑1 (MQ=255)
                                                                                                      gCATGGCACCGGCTGCGCCGGGGTTCGCGGGCGCGCCCGCTCCCACATGGACCACGCTTGCCTGGCATGTTTGTCAGTTGTCTCGCCGTTGATTGCGGCGGAAAAATTGTGTTCGAGCAAACTACAACTGGCTCACTTGTATGAGGCTAg                                               >  2:425649/1‑150 (MQ=255)
                                                                                                        aTGGCACCGGCTGCGCCGGTGTTCGCGGGCGCGCCCGCTCCCACATGGACCACGCTTGCCTGGCATTTTTGTCAGTTGTCTCGCCGTTGATTGCGGCGGAAAAATTGTGTTCGAGCAAACTACAACTGGCTCACTTGTATGAGGCTAGGc                                             >  1:1371729/1‑150 (MQ=255)
                                                                                                           gCACCGGCTGCGCCGGTGTTCGCGGGCGCGCCCGCTCCCACATGGACCACGCTTGCCTGGCATTTTTGTCCGAACGTTCGCCGTTGATTGCGGCGGAAAAATTGTGTGCGAGCAAACTACAACTGGCTCACTTGTATGAGGCTAGGCGAt                                          >  1:603268/1‑150 (MQ=39)
                                                                                                              ccGGCTGCGCCGGTGTTCGCGGGCGCGCCCGCTCCCACATGGACCACGCTTGCCTGGCATTTTTGTCAGTTGTCTCGCCGTTGATTGCGGCGGAAAAATTGTGTTCGAGCAAACTACAACTGGCTCACTTGTATGAGGCTAGGCGATGGc                                       <  1:1404392/150‑1 (MQ=255)
                                                                                                               cGGCTGCGCCGGTGTTCGCGGGCGCGCCCGCTCCCACATGGACCACGCTTGCCTGGCATTTTTGTCAGTTGTCTCGCCGTTGATTGCGGCGGAAAAATTGTGTTCGAGCAAACTACAACTGGCTCACTTGTATGAGGCTAGGCGATGGCg                                      >  1:874046/1‑150 (MQ=255)
                                                                                                               cGGCTGCGCCGGTGTTCGCGGGCGCGCCCGCTCCCACATGGACCACGCTTGCCTGGCATTTTTGTCAGTTGTCCAGCCGTTGATTGCGGCGGAAAAATTGTGTTCGAGCAAACTACAACTGGCTCACTTGTATGAGGCTAGGCGATGGCg                                      <  1:604269/150‑1 (MQ=255)
                                                                                                                 gCTGCGCCGGTGTTCGCGGGCGCGCCCGCTCCCACATGGACCACGCTTGCCTGGCATGTTTGTCAGTTGTCTCGCCGTTGATTGCGGCGGAAAAATTGTGTTCGAGCAAACTACAACTGGCTCACTTGTATGAGGCTAGGCGATGGCGAc                                    >  1:1076045/1‑150 (MQ=255)
                                                                                                                      tggattcttcgcgggcacgcccgctcccacaTGGACCACGCTTGCCTGGCATTTTTGTCAGTTGTCTCGCCGTTGATTGCGGCGGAAAAATTGTGTTCGAGCAAACTACAACTGGCTCACTTGTATGAGGCTAGGCGATGGCGACCTTgg                               <  1:191770‑M2/119‑1 (MQ=255)
                                                                                                                      gcCGGTGTTCGCGGGCGCGCCCGCTCCCACATGGACCACGCTTGCCTGGCATTTTTGTCAGTTGTCTCGCCGTTGATTGCGGCGGAAAAATTGTGTTCGAGCAAACTACAACTGGCTCACTTGTATGAGGCTAGGCGATGGCGACCTTgg                               <  2:1274383/150‑1 (MQ=255)
                                                                                                                        cGGTGTTCGCGGGCGCGCCCGCTCCCACATGGACCACGCTTGCCTGGCATTTTTGTCAGTTGTCTCGCCGTTGATTGCGGCGGAAAAATTGTGTTCGAGCAAACTACAACTGGCTCACTTGTATGAGGCTAGGCGATGGCGACCTTGGca                             >  1:1336005/1‑150 (MQ=255)
                                                                                                                           tgtTCGCGGGCGCGCCCGCTCCCACATGGACCACGCTTGCCTGGCATTTTTGTCAGTTGTCTCGCCGTTGATTGCGGCGGAAAAATTGTGTTCGAGCAAACTACAACTGGCTCACTTGTATGAGGCTAGGCGATGGCGACCTTGGCACAg                          <  2:1076045/150‑1 (MQ=255)
                                                                                                                            gtTCGCGGGCGCGCCCGCTCCCACATGGACCACGCTTGCCTGGCATTTTTGTCAGTTGTCTCGCCGTTGATTGCGGCGGAAAAATTGTGTTCGAGCAAACTACAACTGGCTCACTTGTATGAGGCTAGGCGATGGCGACCTTGGCACAgg                         <  2:103938/150‑1 (MQ=255)
                                                                                                                                gcgGGCGCGCCCGCTCCCACATGGACCACGCTTGCCTGGCATTTTTGTCAGTTGTCTCGCCGTTGATTGCGGCGGAAAAATTGTGTTCGAGCAAACTACAACTGGCTCACTTGTATGAGGCTAGGCGATGGCGACCTTGGCACAGGTCta                     >  2:184511/1‑150 (MQ=255)
                                                                                                                                    gcgcgcCCGCTCCCACATGGACCACGCTTGCCTGGCATTTTTGTCAGTTGTCTCGCCGTTGATTGCGGCGGAAAAATTGTGTTCGAGCAAACTACAACTGGCTCACTTGTATGAGGCTAGGCGATGGCGACCTTGGCACAGGTCTATACa                 <  2:1371729/150‑1 (MQ=255)
                                                                                                                                      gcgcCCGCTCCCACATGGACCACGCTTGCCTGGCATTTTTGTCAGTTGTCTCGCCGTTGATTGCGGCGGAAAAATTGTGTTCGAGCAAACTACAACTGGCTCACTTGTATGAGGCTAGGCGATGGCGACCTTGGCACAGGt                        >  2:1669290/1‑141 (MQ=255)
                                                                                                                                      gcgcCCGCTCCCACATGGACCACGCTTGCCTGGCATTTTTGTCAGTTGTCTCGCCGTTGATTGCGGCGGAAAAATTGTGTTCGAGCAAACTACAACTGGCTCACTTGTATGAGGCTAGGCGATGGCGACCTTGGCACAGGt                        <  1:1669290/141‑1 (MQ=255)
                                                                                                                                       cgcccgctcccacaTGGACCACGCTTGCCTGGCATTTTTGTCAGTTGTCTCGCCGTTGATTGCGGCGGAAAAATTGTGTTCGAGCAAACTACAACTGGCTCACTTGTATGAGGCTAGGCGATGGCGACCTTGGCACAGGTCTATACAGCa              <  2:1857115‑M2/136‑1 (MQ=255)
                                                                                                                                            gctcccacaTGGACCACGCTTGCCTGGCATTTTTGTCAGTTGTCTCGCCGTTCATTGCGGCGGAAAAATTGTGTTCGAGCAAACTACAACTGGCTCACTTGTATGAGGCTAGGCGATGGCGACCTTGGCACAGGTCTATACAGCATACgg         <  1:1860058‑M2/141‑1 (MQ=255)
                                                                                                                                            gCTCCCACATGGACCACGCTTGCCTGGCATTTTTTTTTTTTTTTTTTTCTTTGATTGCGGCGGAAAAATTTTGTTCGATCAAACTACAACTGGCTCACTTGTATGAGGCTAGGCGATGTCGACCTTGGCACATGTCTATACAGCAttttg         >  2:511783/1‑146 (MQ=255)
                                                                                                                                               cccacaTGGACCACGCTTGCCTGGCATTTTTGTCAGTTGTCTCGCCGTCGATTGCGGCGGAAAAATTGTGTTCGAGCAAACTACAACTGGCTCACTTGTATGAGGCTAGGCGATGGCGACCTTGGCACAGGTCTATACAGCATACGGGTa      <  1:292818‑M2/144‑1 (MQ=255)
                                                                                                                                                 cacaTGGACCACGCTTGCCTGGCATTTTTGTCAGTTGTCTCGCCGTTGATTGCGGCGGAAAAATTGTGTTCGAGCAAACTACAACTGGCTCACTTGTATGAGGCTAGGCGATGGCGACCTTGGCACAGGTCTATACAGCATACGGGTACt    >  1:1355161‑M2/5‑150 (MQ=255)
                                                                                                                                                   caTGGACCACGCTTGCCTGGCATTTTTGTCAGTTGTCTCGCCGTTGATTGCGGCGGAAAAATTGTGTTc                                                                                   <  2:437388‑M2/67‑1 (MQ=255)
                                                                                                                                                   caTGGACCACGCTTGCCTGGCATTTTTGTCAGTTGTCTCGCCGTTGATTGCGGCGGAAAAATTGTGTTc                                                                                   >  1:437388‑M2/3‑69 (MQ=255)
                                                                                                                                                   caTGGACCACGCTTGCCTGGCATTTTTGTCAGTTGTCTCGCCGTTGATTGCGGCGGAAAAATTGTGTTCGAGCAAACTACAACTGGCTCACTTGTATGAGGCTAGGCGATGGCGACCTTGGCACAGGTCTATACAGCATACGGGTACTcc  >  2:1068795‑M2/3‑150 (MQ=255)
                                                                                                                                                     |                                                                                                                                                   
GCCCGATCGCGGGCAAGCCAGCTCTCATAGAACTGCGCATCACTTACTGATTTAGCAGGGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAATCCAACGCGGTGCATGGCACCGGCTGCGCCGGTGTTCGCGGGCGCGCCCGCTCCCACATGGACCACGCTTGCCTGGCATTTTTGTCAGTTGTCTCGCCGTTGATTGCGGCGGAAAAATTGTGTTCGAGCAAACTACAACTGGCTCACTTGTATGAGGCTAGGCGATGGCGACCTTGGCACAGGTCTATACAGCATACGGGTACTCC  >  NC_002947/2301475‑2301771

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.