New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4852498	25 (0.340)	5 (0.100)	5/172	NT	23.8%	intergenic (‑124/+173)	recR/ybaB	recombination protein RecR/nucleoid‑associated broad specificity regulator
	?	NC_002947	= 4852557	15 (0.300)					intergenic (‑183/+114)	recR/ybaB	recombination protein RecR/nucleoid‑associated broad specificity regulator

ACCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCAC‑AAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGCAAAAAAAACCGCCACTGTTGTCAGCGGCGGTTTTGAGTATCGCAATGCCCTTAGAACGGCATCTTGAAGCCCGGCGGCA  >  NC_002947/4852411‑4852699                                                                                                                                                   |                                                                                                                                                aCCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCccc                                                                                                                                              >  1:1047240‑M2/1‑147 (MQ=255) aCCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCccc                                                                                                                                              >  1:363113‑M2/1‑147 (MQ=255)         ggggCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGCAGCTGAAATCCCGGGGCCGCTTCGCGCccctttcgcga                                                                                                                                      >  1:1780497‑M2/1‑139 (MQ=255)            gCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCccctttcgcgacac                                                                                                                                   >  2:1880459‑M2/1‑136 (MQ=255)               gTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCccctttcgcgacacaag                                                                                                                                >  1:358956‑M2/1‑133 (MQ=255)                tGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGCAGCTCAAATCCCGGGGCCGCTTCGCGCccctttcgcgacacaagg                                                                                                                               >  2:1006311‑M2/1‑132 (MQ=255)                                                                        cTTGTGTCGCGAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCAC‑AAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGCAAAAAAAACCg                                                                      >  2:704496/1‑150 (MQ=255)                                                                        cTTGTGTCGCGAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTAGCGACACAAGGCCGCTCCCAC‑AAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGCACAAAAAAcgg                                                                      >  1:790755/1‑148 (MQ=255)                                                                              tCGCGAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCAC‑AAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGCAAAAAAAACCGCCACtc                                                                >  1:1915332/1‑149 (MQ=255)                                                                                gcgAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGTGCCGCGTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCAC‑AAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGCAAAAAAAACCGCCACtgtt                                                              >  2:782523/1‑150 (MQ=255)                                                                                  gAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCccctttcgcgacacaaggccgctcccacaaaaaagcagaccttgcaggctttgggcgaggtgatttgacgccaccgc                                                                    >  2:710879‑M2/1‑66 (MQ=255)                                                                                  gAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCccctttcgcgacacaaggccgctcccacaaaaaagcagaccttgcaggctttgggcgaggtgatttgacgccaccgc                                                                    <  1:710879‑M2/143‑78 (MQ=255)                                                                                             gAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCAC‑AAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGCAAAAAAAACCGCCACTGTTGTCAGCGGCGGtt                                                 >  1:905277/1‑150 (MQ=255)                                                                                                 cagcCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCAC‑AAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGCAAAAAAAACCGCCACTGTTGTCAGCGGCGGTTTTgg                                             >  1:236419/1‑149 (MQ=255)                                                                                                 cagcCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCAGccctttcgcgacacaaggccgctcccacaaaaaagcagaccttgcaggctttgggcgaggtgatttgacaccaccgcccccgctgggtataaaccgcct                                              <  2:1541201‑M2/150‑100 (MQ=255)                                                                                                     cccGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCccctttcgcgacacaaggccgctcccacaaaaaagcagaccttgcaggctttgggcgaggtgatttgacgccaccgcccccgctgggtataaaccgcctctta                                          <  1:1303115‑M2/150‑104 (MQ=255)                                                                                                       cGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCAC‑AAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGCAAAAAAAACCGCCACTGTTGTCAGCGGCGGTTTTGa                                             <  1:322678/144‑1 (MQ=255)                                                                                                       cGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCAC‑AAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGCAAAAAAAACCGCCACTGTTGTCAGCGGCGGTTTTGa                                             >  2:322678/1‑144 (MQ=255)                                                                                                                   ctgcGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCAC‑AAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGCAAAAAAAACCGCCACTGTTGTCAGCGGCGGTTTTGAGTATCGCAATGCCCTTAg                           >  1:1687554/1‑150 (MQ=255)                                                                                                                           cTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGCAAAAAAAACCGCCACTGTTGTCAGCGGCGGTTTTGAGTATCGCAATGCCCTTAGAACGGCa                    >  1:632693/1‑150 (MQ=255)                                                                                                                            tcaaaTCCCTGGGCCGCTTCGCGCCACTTTCGCGACACAAGGCCGCTCCCAC‑AAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGCAAAAAAAACCGCCACTGTTGTCAGCGGCGGTTTTGAGTATCGCAATGCCCTTAGAACGGCATc                  >  2:1012632/3‑150 (MQ=255)                                                                                                                             gAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCAC‑AAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGCAAAAAAAACCGCCACTGTTGTCAGCGGCGGTTTTGAGTATCGc                                      >  2:1782382/1‑129 (MQ=255)                                                                                                                             gAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCAC‑AAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGCAAAAAAAACCGCCACTGTTGTCAGCGGCGGTTTTGAGTATCGc                                      <  1:1782382/129‑1 (MQ=255)                                                                                                                                   ccGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCAC‑AAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGCAAAAAAAACCGCCACTGTTGTCAGCGGCGGTTTTGAGTATCGCAATGCCCTTAGAACGGCATCTTGAAGc           >  2:809296/1‑150 (MQ=255)                                                                                                                                           gCTTCGCGCCCCTGTCTCGACACAAGGCCGCGCCCAC‑AAAAAAGCGGACCGCAACTGGGTTGAGATCTCCGCAACAAAAACCGCCACTGTTGTCAGCGGCGGTTTTGAGTATCGCAAGACCCTCAGAACTGCATCTTGAAGCCCggccgc   >  2:816811/1‑150 (MQ=255)                                                                                                                                             ttCGCGCccctttcgcgacacaaggccgctcccacaaaaaagcagaccttgcaggctttgggcgaggtgatttgacgccaccgcccccgctgggtataaaccgcctcttattgaattgtcaggcctttcccatgagcttcagccctctca  <  1:153839‑M2/150‑144 (MQ=255)                                                                                                                                                   |                                                                                                                                                ACCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCAC‑AAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGCAAAAAAAACCGCCACTGTTGTCAGCGGCGGTTTTGAGTATCGCAATGCCCTTAGAACGGCATCTTGAAGCCCGGCGGCA  >  NC_002947/4852411‑4852699

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.